Wall clock time and date at job start Tue Mar 31 2020 14:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31589 * 122.23331 * 2 1 4 4 C 1.29950 * 117.13703 * 180.02562 * 3 2 1 5 5 N 1.38893 * 125.36404 * 180.02562 * 4 3 2 6 6 C 1.34776 * 120.00170 * 180.02562 * 5 4 3 7 7 O 1.21293 * 119.99588 * 359.97438 * 6 5 4 8 8 C 1.50692 * 120.00362 * 180.02562 * 6 5 4 9 9 H 1.09004 * 110.99076 * 55.79033 * 8 6 5 10 10 C 1.54947 * 111.12099 * 291.55178 * 8 6 5 11 11 O 1.43651 * 105.13733 * 205.63517 * 10 8 6 12 12 C 1.43238 * 109.96745 * 24.42668 * 11 10 8 13 13 H 1.08997 * 109.90689 * 238.72800 * 12 11 10 14 14 C 1.52998 * 109.83008 * 117.80497 * 12 11 10 15 15 C 1.54381 * 107.58928 * 358.28951 * 12 11 10 16 16 S 1.76146 * 109.27029 * 359.73505 * 4 3 2 17 17 C 1.34656 * 122.22610 * 180.02562 * 2 1 3 18 18 S 1.76198 * 125.93136 * 359.97438 * 17 2 1 19 19 C 1.76207 * 100.00096 * 180.02562 * 18 17 2 20 20 H 1.08005 * 119.99695 * 359.97438 * 19 18 17 21 21 C 1.38424 * 120.00015 * 180.02562 * 19 18 17 22 22 N 1.31808 * 120.00030 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99824 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47297 * 179.97438 * 23 21 19 25 25 H 1.48503 * 109.47261 * 60.00040 * 23 21 19 26 26 H 1.48500 * 109.47454 * 300.00033 * 23 21 19 27 27 H 1.08997 * 109.46804 * 269.98059 * 1 2 3 28 28 H 1.09003 * 109.46377 * 29.97373 * 1 2 3 29 29 H 1.08994 * 109.47534 * 149.97252 * 1 2 3 30 30 H 0.97003 * 120.00305 * 359.97438 * 5 4 3 31 31 H 1.09002 * 110.31502 * 324.54882 * 10 8 6 32 32 H 1.09005 * 110.31461 * 86.72177 * 10 8 6 33 33 H 1.09010 * 109.47289 * 301.86455 * 14 12 11 34 34 H 1.08999 * 109.47525 * 61.85963 * 14 12 11 35 35 H 1.08995 * 109.47378 * 181.86555 * 14 12 11 36 36 H 1.09005 * 110.84709 * 220.45056 * 15 12 11 37 37 H 1.09001 * 111.02181 * 96.91862 * 15 12 11 38 38 H 0.97001 * 120.00251 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2089 1.1131 0.0000 4 6 3.5032 0.9977 -0.0005 5 7 4.4046 2.0544 -0.0001 6 6 5.7299 1.8098 -0.0012 7 8 6.1355 0.6667 -0.0022 8 6 6.7078 2.9563 -0.0002 9 1 6.5264 3.6235 0.8425 10 6 6.6654 3.7276 -1.3434 11 8 7.9625 4.3318 -1.4702 12 6 8.9233 3.5921 -0.7077 13 1 9.3874 4.2415 0.0346 14 6 9.9943 3.0192 -1.6380 15 6 8.1732 2.4421 -0.0017 16 16 3.9346 -0.7102 0.0066 17 6 2.2251 -1.1391 -0.0005 18 16 1.5695 -2.7746 -0.0006 19 6 3.0664 -3.7043 -0.0006 20 1 4.0186 -3.1946 -0.0009 21 6 3.0219 -5.0878 -0.0012 22 7 1.8598 -5.7098 -0.0023 23 14 4.6087 -6.0733 -0.0019 24 1 4.2906 -7.5239 -0.0018 25 1 5.3988 -5.7403 1.2106 26 1 5.3984 -5.7393 -1.2144 27 1 -0.3633 -0.0003 1.0277 28 1 -0.3632 0.8903 -0.5135 29 1 -0.3634 -0.8897 -0.5142 30 1 4.0802 2.9686 0.0003 31 1 6.4863 3.0393 -2.1695 32 1 5.8918 4.4950 -1.3149 33 1 9.5225 2.3835 -2.3873 34 1 10.5200 3.8357 -2.1332 35 1 10.7035 2.4303 -1.0564 36 1 8.5384 2.3083 1.0166 37 1 8.2583 1.5144 -0.5675 38 1 1.0357 -5.1981 -0.0023 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331264533.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:24 Heat of formation + Delta-G solvation = -77.057248 kcal Electronic energy + Delta-G solvation = -22744.760039 eV Core-core repulsion = 19224.688926 eV Total energy + Delta-G solvation = -3520.071113 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.93169 -40.53408 -39.79035 -36.28740 -35.00757 -33.59802 -32.90751 -31.89241 -28.84944 -27.28452 -27.20590 -26.05429 -23.81484 -22.35404 -22.08268 -21.17307 -20.22849 -19.30778 -18.63448 -18.01995 -17.62716 -16.95881 -16.72410 -16.21566 -15.83866 -15.67003 -15.50447 -14.96013 -14.86055 -14.72905 -14.68934 -14.18660 -13.81430 -13.55486 -13.53375 -13.38261 -12.96884 -12.90032 -12.50731 -12.30299 -12.21412 -12.15645 -12.06728 -11.96526 -11.84739 -11.33802 -11.31160 -10.83135 -10.59883 -10.57033 -10.52323 -9.64762 -9.11024 -8.52927 -6.44578 -0.35832 0.08913 0.70774 1.04911 1.23371 1.42157 1.50963 1.51252 1.74070 1.89808 2.17535 2.70869 2.84744 2.91279 3.07530 3.45971 3.69629 3.71913 3.93197 4.01718 4.13246 4.30917 4.42747 4.57100 4.62473 4.64370 4.74091 4.75452 4.83555 4.85328 4.92875 4.98883 5.14711 5.30138 5.35782 5.52129 5.83200 5.94400 6.00330 6.64462 6.75484 6.78584 8.31593 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014090 B = 0.003533 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.725788 B = 7923.804086 C = 9715.698408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.046 3.954 3 N -0.482 5.482 4 C 0.231 3.769 5 N -0.600 5.600 6 C 0.519 3.481 7 O -0.534 6.534 8 C -0.126 4.126 9 H 0.157 0.843 10 C 0.064 3.936 11 O -0.387 6.387 12 C 0.076 3.924 13 H 0.106 0.894 14 C -0.165 4.165 15 C -0.136 4.136 16 S 0.167 5.833 17 C -0.275 4.275 18 S 0.046 5.954 19 C -0.638 4.638 20 H 0.076 0.924 21 C 0.003 3.997 22 N -0.896 5.896 23 Si 1.121 2.879 24 H -0.267 1.267 25 H -0.266 1.266 26 H -0.266 1.266 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.066 0.934 30 H 0.438 0.562 31 H 0.052 0.948 32 H 0.125 0.875 33 H 0.046 0.954 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.105 0.895 37 H 0.073 0.927 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.974 21.276 0.299 23.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.095 4.095 3 N -0.204 5.204 4 C -0.141 4.141 5 N -0.252 5.252 6 C 0.307 3.693 7 O -0.409 6.409 8 C -0.147 4.147 9 H 0.175 0.825 10 C -0.012 4.012 11 O -0.306 6.306 12 C 0.019 3.981 13 H 0.124 0.876 14 C -0.223 4.223 15 C -0.174 4.174 16 S 0.413 5.587 17 C -0.510 4.510 18 S 0.293 5.707 19 C -0.786 4.786 20 H 0.094 0.906 21 C -0.203 4.203 22 N -0.530 5.530 23 Si 0.938 3.062 24 H -0.192 1.192 25 H -0.190 1.190 26 H -0.191 1.191 27 H 0.099 0.901 28 H 0.108 0.892 29 H 0.085 0.915 30 H 0.280 0.720 31 H 0.070 0.930 32 H 0.143 0.857 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.124 0.876 37 H 0.092 0.908 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.506 18.564 0.179 21.841 hybrid contribution -0.658 1.805 0.033 1.921 sum 10.848 20.369 0.212 23.078 Atomic orbital electron populations 1.20276 0.85554 1.03273 1.03243 1.19764 0.98526 0.84127 1.07066 1.66067 1.02686 1.31075 1.20607 1.24220 0.90299 0.93162 1.06434 1.42620 1.03932 1.08018 1.70619 1.21338 0.81623 0.91662 0.74709 1.90731 1.77351 1.24478 1.48349 1.23059 0.93563 0.94654 1.03415 0.82504 1.23412 0.87130 0.97351 0.93350 1.88457 1.17659 1.52589 1.71937 1.22910 0.89849 0.92156 0.93171 0.87590 1.22173 0.98668 1.01421 1.00012 1.23183 0.91323 0.99073 1.03834 1.86101 1.01779 0.97922 1.72918 1.28181 1.01913 1.04541 1.16383 1.82354 1.12562 0.89253 1.86576 1.24350 0.93625 0.97029 1.63610 0.90637 1.27554 1.06598 0.95360 0.90779 1.71052 0.98455 1.39073 1.44420 0.82908 0.69618 0.75094 0.78557 1.19172 1.19048 1.19137 0.90134 0.89175 0.91470 0.71964 0.92965 0.85711 0.93511 0.91395 0.90081 0.87650 0.90839 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.09 10.02 71.24 0.71 -1.38 16 2 C 0.05 1.86 6.73 41.77 0.28 2.14 16 3 N -0.48 -17.65 10.55 -184.86 -1.95 -19.60 16 4 C 0.23 8.11 8.40 179.15 1.50 9.61 16 5 N -0.60 -14.31 5.40 -309.57 -1.67 -15.98 16 6 C 0.52 12.25 7.11 87.65 0.62 12.87 16 7 O -0.53 -17.73 13.22 -3.07 -0.04 -17.77 16 8 C -0.13 -1.74 3.49 -10.09 -0.04 -1.78 16 9 H 0.16 1.11 8.14 -2.39 -0.02 1.09 16 10 C 0.06 0.87 7.25 72.65 0.53 1.40 16 11 O -0.39 -6.36 11.02 -148.98 -1.64 -8.00 16 12 C 0.08 1.01 4.16 31.06 0.13 1.14 16 13 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 14 C -0.17 -2.23 9.44 71.98 0.68 -1.55 16 15 C -0.14 -2.05 5.70 31.85 0.18 -1.87 16 16 S 0.17 7.30 18.35 -56.49 -1.04 6.26 16 17 C -0.27 -12.72 6.67 67.00 0.45 -12.28 16 18 S 0.05 2.40 19.77 -56.49 -1.12 1.28 16 19 C -0.64 -36.24 9.26 67.86 0.63 -35.62 16 20 H 0.08 4.28 5.97 -2.91 -0.02 4.26 16 21 C 0.00 0.15 5.49 84.74 0.46 0.62 16 22 N -0.90 -52.95 13.68 21.59 0.30 -52.65 16 23 Si 1.12 48.92 29.91 68.60 2.05 50.97 16 24 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 25 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 26 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 27 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.07 2.27 7.37 -2.39 -0.02 2.25 16 30 H 0.44 6.71 8.82 -92.71 -0.82 5.89 16 31 H 0.05 0.88 8.02 -2.39 -0.02 0.86 16 32 H 0.13 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.10 1.27 8.14 -2.38 -0.02 1.26 16 37 H 0.07 1.50 7.06 -2.39 -0.02 1.48 16 38 H 0.27 15.79 7.12 -92.71 -0.66 15.13 16 Total: -1.00 -73.21 344.59 1.43 -71.78 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: 0.40 Total: 10.40 kcal Atomic # 6 Polarization: -32.83 SS G_CDS: 6.15 Total: -26.69 kcal Atomic # 7 Polarization: -84.91 SS G_CDS: -3.33 Total: -88.24 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -1.68 Total: -25.77 kcal Atomic # 14 Polarization: 48.92 SS G_CDS: 2.05 Total: 50.97 kcal Atomic # 16 Polarization: 9.70 SS G_CDS: -2.15 Total: 7.55 kcal Total: -73.21 1.43 -71.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331264533.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.278 kcal (2) G-P(sol) polarization free energy of solvation -73.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds