Wall clock time and date at job start Tue Mar 31 2020 14:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31594 * 122.22924 * 2 1 4 4 C 1.29949 * 117.13420 * 180.29322 * 3 2 1 5 5 N 1.38894 * 125.36377 * 179.73618 * 4 3 2 6 6 C 1.34776 * 119.99702 * 180.02562 * 5 4 3 7 7 O 1.21287 * 120.00350 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99681 * 179.97438 * 6 5 4 9 9 H 1.08996 * 110.46078 * 57.39515 * 8 6 5 10 10 C 1.54480 * 110.51155 * 294.63821 * 8 6 5 11 11 O 1.44423 * 104.80475 * 217.37929 * 10 8 6 12 12 C 1.44419 * 105.27398 * 40.51269 * 11 10 8 13 13 H 1.08996 * 110.46780 * 78.37104 * 12 11 10 14 14 C 1.53010 * 110.36855 * 200.65748 * 12 11 10 15 15 C 1.54477 * 104.80540 * 319.48655 * 12 11 10 16 16 S 1.76137 * 109.27013 * 359.75234 * 4 3 2 17 17 C 1.34651 * 122.22874 * 179.82791 * 2 1 3 18 18 S 1.76198 * 125.93068 * 0.02562 * 17 2 1 19 19 C 1.76207 * 100.00096 * 179.71903 * 18 17 2 20 20 H 1.08005 * 119.99695 * 359.97438 * 19 18 17 21 21 C 1.38424 * 120.00015 * 180.02562 * 19 18 17 22 22 N 1.31808 * 120.00030 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99824 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47297 * 179.97438 * 23 21 19 25 25 H 1.48503 * 109.47261 * 60.00040 * 23 21 19 26 26 H 1.48500 * 109.47454 * 300.00033 * 23 21 19 27 27 H 1.08999 * 109.46938 * 270.17562 * 1 2 3 28 28 H 1.08999 * 109.47127 * 30.17237 * 1 2 3 29 29 H 1.08994 * 109.47420 * 150.17281 * 1 2 3 30 30 H 0.96996 * 119.99976 * 359.97438 * 5 4 3 31 31 H 1.09003 * 110.37445 * 336.21281 * 10 8 6 32 32 H 1.09001 * 110.36919 * 98.54379 * 10 8 6 33 33 H 1.09001 * 109.46498 * 175.38249 * 14 12 11 34 34 H 1.08998 * 109.46864 * 295.37677 * 14 12 11 35 35 H 1.08993 * 109.47153 * 55.38031 * 14 12 11 36 36 H 1.09001 * 110.51342 * 265.33865 * 15 12 11 37 37 H 1.09000 * 110.62949 * 142.68373 * 15 12 11 38 38 H 0.97001 * 120.00251 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1132 0.0000 4 6 3.5031 0.9978 -0.0059 5 7 4.4044 2.0546 -0.0122 6 6 5.7297 1.8099 -0.0185 7 8 6.1354 0.6669 -0.0183 8 6 6.7076 2.9565 -0.0258 9 1 6.5406 3.6052 0.8340 10 6 6.5931 3.7572 -1.3420 11 8 7.9496 4.1340 -1.6640 12 6 8.7511 2.9739 -1.3515 13 1 8.6662 2.2280 -2.1418 14 6 10.2144 3.3750 -1.1540 15 6 8.1600 2.4294 -0.0323 16 16 3.9345 -0.7100 -0.0053 17 6 2.2251 -1.1390 0.0034 18 16 1.5696 -2.7745 0.0077 19 6 3.0665 -3.7042 0.0023 20 1 4.0186 -3.1944 -0.0025 21 6 3.0220 -5.0877 0.0033 22 7 1.8599 -5.7097 0.0077 23 14 4.6089 -6.0732 -0.0031 24 1 4.2908 -7.5238 -0.0003 25 1 5.4040 -5.7390 1.2057 26 1 5.3934 -5.7403 -1.2192 27 1 -0.3633 0.0031 1.0277 28 1 -0.3633 0.8884 -0.5165 29 1 -0.3634 -0.8915 -0.5111 30 1 4.0799 2.9687 -0.0127 31 1 6.1754 3.1321 -2.1313 32 1 5.9777 4.6445 -1.1940 33 1 10.7903 2.5047 -0.8392 34 1 10.6163 3.7565 -2.0926 35 1 10.2789 4.1493 -0.3897 36 1 8.7116 2.8195 0.8231 37 1 8.1707 1.3395 -0.0276 38 1 1.0358 -5.1980 0.0106 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331264548.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:27 Heat of formation + Delta-G solvation = -54.601287 kcal Electronic energy + Delta-G solvation = -22769.298992 eV Core-core repulsion = 19250.201643 eV Total energy + Delta-G solvation = -3519.097349 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.91525 -39.23013 -38.50385 -34.96438 -32.97827 -32.72850 -32.18824 -30.51154 -27.23620 -26.45444 -25.22624 -24.78590 -22.69786 -21.63285 -20.88007 -19.64220 -18.62030 -17.88582 -17.47046 -16.43652 -16.20402 -15.93178 -15.76376 -15.28460 -14.70160 -14.32977 -14.04442 -13.93444 -13.52834 -13.25045 -12.92453 -12.69894 -12.54417 -12.45553 -12.35750 -12.21601 -11.97462 -11.78491 -11.25683 -11.17780 -11.15367 -10.91668 -10.71401 -10.35696 -10.25907 -10.15971 -9.88914 -9.57821 -9.14639 -8.82578 -8.64736 -7.94846 -7.00514 -6.67482 -4.38317 1.22317 1.72343 2.27127 2.38422 2.69478 3.02369 3.24990 3.25333 3.45196 3.45626 3.51524 3.98187 3.98948 4.31311 4.40160 4.58899 4.80857 4.84624 4.85349 4.89006 5.03431 5.06767 5.19558 5.27453 5.37515 5.51062 5.68862 5.70734 5.81844 5.83449 6.00410 6.10178 6.30278 6.34805 6.43774 6.81096 7.01464 7.64132 7.80026 8.11700 8.36169 8.80885 10.40914 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014005 B = 0.003565 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.800539 B = 7851.876824 C = 9657.089146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.025 3.975 3 N -0.476 5.476 4 C 0.188 3.812 5 N -0.613 5.613 6 C 0.513 3.487 7 O -0.499 6.499 8 C -0.136 4.136 9 H 0.116 0.884 10 C 0.057 3.943 11 O -0.367 6.367 12 C 0.068 3.932 13 H 0.074 0.926 14 C -0.146 4.146 15 C -0.143 4.143 16 S 0.213 5.787 17 C -0.239 4.239 18 S 0.088 5.912 19 C -0.623 4.623 20 H 0.083 0.917 21 C 0.046 3.954 22 N -0.869 5.869 23 Si 1.081 2.919 24 H -0.274 1.274 25 H -0.279 1.279 26 H -0.279 1.279 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.415 0.585 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.673 17.784 -0.557 20.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.117 4.117 3 N -0.197 5.197 4 C -0.182 4.182 5 N -0.262 5.262 6 C 0.298 3.702 7 O -0.373 6.373 8 C -0.158 4.158 9 H 0.134 0.866 10 C -0.021 4.021 11 O -0.286 6.286 12 C 0.011 3.989 13 H 0.092 0.908 14 C -0.203 4.203 15 C -0.180 4.180 16 S 0.457 5.543 17 C -0.475 4.475 18 S 0.337 5.663 19 C -0.771 4.771 20 H 0.101 0.899 21 C -0.165 4.165 22 N -0.501 5.501 23 Si 0.905 3.095 24 H -0.198 1.198 25 H -0.204 1.204 26 H -0.204 1.204 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.253 0.747 31 H 0.085 0.915 32 H 0.121 0.879 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.124 0.876 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.219 15.013 -0.639 18.172 hybrid contribution -0.467 2.467 0.161 2.516 sum 9.753 17.480 -0.478 20.022 Atomic orbital electron populations 1.20135 0.87936 1.02222 1.01906 1.19091 0.96807 0.84570 1.11213 1.65845 1.02839 1.32242 1.18770 1.23880 0.89978 0.93125 1.11253 1.42409 1.04361 1.08132 1.71278 1.20580 0.81793 0.91283 0.76569 1.90694 1.76765 1.22381 1.47422 1.22646 0.95334 0.95798 1.02010 0.86559 1.23354 0.85874 0.99273 0.93570 1.89150 1.16879 1.35790 1.86752 1.23077 0.92352 0.87674 0.95825 0.90828 1.21803 0.93409 1.02326 1.02772 1.23074 0.91993 1.04267 0.98715 1.85903 1.01346 0.94996 1.72004 1.28325 1.01415 1.05222 1.12588 1.82517 1.12940 0.87576 1.83222 1.24139 0.92944 0.96379 1.63672 0.89916 1.26200 1.04569 0.94120 0.91638 1.70977 0.98204 1.39065 1.41875 0.83362 0.72540 0.76016 0.77602 1.19822 1.20429 1.20426 0.91743 0.91707 0.91098 0.74722 0.91474 0.87885 0.90833 0.91787 0.91691 0.89666 0.87646 0.91215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.07 10.02 36.01 0.36 -0.71 16 2 C 0.03 0.53 6.73 -83.96 -0.57 -0.04 16 3 N -0.48 -9.26 10.55 -9.78 -0.10 -9.36 16 4 C 0.19 3.48 8.40 -87.19 -0.73 2.75 16 5 N -0.61 -8.30 5.39 -11.78 -0.06 -8.36 16 6 C 0.51 6.73 6.98 -10.98 -0.08 6.65 16 7 O -0.50 -8.51 12.80 5.55 0.07 -8.44 16 8 C -0.14 -1.21 3.51 -90.20 -0.32 -1.53 16 9 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 10 C 0.06 0.48 7.17 37.93 0.27 0.75 16 11 O -0.37 -3.70 11.34 -35.23 -0.40 -4.10 16 12 C 0.07 0.61 3.92 -25.95 -0.10 0.51 16 13 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 14 C -0.15 -1.04 9.52 37.16 0.35 -0.68 16 15 C -0.14 -1.30 6.22 -25.16 -0.16 -1.46 16 16 S 0.21 4.61 18.35 -107.50 -1.97 2.64 16 17 C -0.24 -5.45 6.67 29.46 0.20 -5.26 16 18 S 0.09 2.19 19.76 -107.50 -2.12 0.07 16 19 C -0.62 -17.04 9.26 30.80 0.29 -16.75 16 20 H 0.08 2.25 5.97 -52.48 -0.31 1.94 16 21 C 0.05 1.26 5.49 -17.49 -0.10 1.17 16 22 N -0.87 -24.79 13.68 55.47 0.76 -24.03 16 23 Si 1.08 23.89 29.91 -169.99 -5.08 18.81 16 24 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 25 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 26 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.07 1.21 7.37 -51.93 -0.38 0.83 16 30 H 0.42 4.12 8.82 -40.82 -0.36 3.76 16 31 H 0.07 0.62 7.86 -51.93 -0.41 0.21 16 32 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.64 7.87 -51.93 -0.41 0.23 16 37 H 0.11 1.17 6.50 -51.93 -0.34 0.83 16 38 H 0.28 7.80 7.12 -40.82 -0.29 7.51 16 LS Contribution 343.64 15.07 5.18 5.18 Total: -1.00 -32.42 343.64 -9.00 -41.41 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -4.68 Total: 0.79 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: -0.58 Total: -14.60 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: 0.59 Total: -41.76 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: -0.33 Total: -12.54 kcal Atomic # 14 Polarization: 23.89 SS G_CDS: -5.08 Total: 18.81 kcal Atomic # 16 Polarization: 6.80 SS G_CDS: -4.10 Total: 2.70 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.42 -9.00 -41.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331264548.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.187 kcal (2) G-P(sol) polarization free energy of solvation -32.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds