Wall clock time and date at job start Tue Mar 31 2020 14:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31594 * 122.22924 * 2 1 4 4 C 1.29949 * 117.13420 * 180.29322 * 3 2 1 5 5 N 1.38894 * 125.36377 * 179.73618 * 4 3 2 6 6 C 1.34776 * 119.99702 * 180.02562 * 5 4 3 7 7 O 1.21287 * 120.00350 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99681 * 179.97438 * 6 5 4 9 9 H 1.08996 * 110.46078 * 57.39515 * 8 6 5 10 10 C 1.54480 * 110.51155 * 294.63821 * 8 6 5 11 11 O 1.44423 * 104.80475 * 217.37929 * 10 8 6 12 12 C 1.44419 * 105.27398 * 40.51269 * 11 10 8 13 13 H 1.08996 * 110.46780 * 78.37104 * 12 11 10 14 14 C 1.53010 * 110.36855 * 200.65748 * 12 11 10 15 15 C 1.54477 * 104.80540 * 319.48655 * 12 11 10 16 16 S 1.76137 * 109.27013 * 359.75234 * 4 3 2 17 17 C 1.34651 * 122.22874 * 179.82791 * 2 1 3 18 18 S 1.76198 * 125.93068 * 0.02562 * 17 2 1 19 19 C 1.76207 * 100.00096 * 179.71903 * 18 17 2 20 20 H 1.08005 * 119.99695 * 359.97438 * 19 18 17 21 21 C 1.38424 * 120.00015 * 180.02562 * 19 18 17 22 22 N 1.31808 * 120.00030 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99824 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47297 * 179.97438 * 23 21 19 25 25 H 1.48503 * 109.47261 * 60.00040 * 23 21 19 26 26 H 1.48500 * 109.47454 * 300.00033 * 23 21 19 27 27 H 1.08999 * 109.46938 * 270.17562 * 1 2 3 28 28 H 1.08999 * 109.47127 * 30.17237 * 1 2 3 29 29 H 1.08994 * 109.47420 * 150.17281 * 1 2 3 30 30 H 0.96996 * 119.99976 * 359.97438 * 5 4 3 31 31 H 1.09003 * 110.37445 * 336.21281 * 10 8 6 32 32 H 1.09001 * 110.36919 * 98.54379 * 10 8 6 33 33 H 1.09001 * 109.46498 * 175.38249 * 14 12 11 34 34 H 1.08998 * 109.46864 * 295.37677 * 14 12 11 35 35 H 1.08993 * 109.47153 * 55.38031 * 14 12 11 36 36 H 1.09001 * 110.51342 * 265.33865 * 15 12 11 37 37 H 1.09000 * 110.62949 * 142.68373 * 15 12 11 38 38 H 0.97001 * 120.00251 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1132 0.0000 4 6 3.5031 0.9978 -0.0059 5 7 4.4044 2.0546 -0.0122 6 6 5.7297 1.8099 -0.0185 7 8 6.1354 0.6669 -0.0183 8 6 6.7076 2.9565 -0.0258 9 1 6.5406 3.6052 0.8340 10 6 6.5931 3.7572 -1.3420 11 8 7.9496 4.1340 -1.6640 12 6 8.7511 2.9739 -1.3515 13 1 8.6662 2.2280 -2.1418 14 6 10.2144 3.3750 -1.1540 15 6 8.1600 2.4294 -0.0323 16 16 3.9345 -0.7100 -0.0053 17 6 2.2251 -1.1390 0.0034 18 16 1.5696 -2.7745 0.0077 19 6 3.0665 -3.7042 0.0023 20 1 4.0186 -3.1944 -0.0025 21 6 3.0220 -5.0877 0.0033 22 7 1.8599 -5.7097 0.0077 23 14 4.6089 -6.0732 -0.0031 24 1 4.2908 -7.5238 -0.0003 25 1 5.4040 -5.7390 1.2057 26 1 5.3934 -5.7403 -1.2192 27 1 -0.3633 0.0031 1.0277 28 1 -0.3633 0.8884 -0.5165 29 1 -0.3634 -0.8915 -0.5111 30 1 4.0799 2.9687 -0.0127 31 1 6.1754 3.1321 -2.1313 32 1 5.9777 4.6445 -1.1940 33 1 10.7903 2.5047 -0.8392 34 1 10.6163 3.7565 -2.0926 35 1 10.2789 4.1493 -0.3897 36 1 8.7116 2.8195 0.8231 37 1 8.1707 1.3395 -0.0276 38 1 1.0358 -5.1980 0.0106 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331264548.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:26 Heat of formation + Delta-G solvation = -76.323818 kcal Electronic energy + Delta-G solvation = -22770.240951 eV Core-core repulsion = 19250.201643 eV Total energy + Delta-G solvation = -3520.039309 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.97851 -40.52178 -39.71458 -36.30224 -35.00809 -33.55337 -32.94365 -31.89023 -28.85030 -27.24985 -27.15259 -25.94038 -23.83325 -22.57290 -22.07312 -21.10742 -20.24685 -19.31997 -18.76086 -17.80670 -17.28724 -16.96703 -16.66289 -16.32937 -16.18002 -15.77664 -15.60782 -15.20117 -14.95595 -14.69133 -14.26440 -14.15030 -13.71942 -13.52327 -13.39470 -13.17383 -13.00373 -12.96808 -12.55384 -12.36257 -12.22028 -12.15477 -11.96783 -11.92203 -11.84812 -11.33948 -11.26614 -10.87738 -10.82937 -10.57121 -10.52369 -9.64864 -9.11083 -8.53046 -6.44662 -0.35809 0.08814 0.70637 1.06043 1.23462 1.42512 1.50992 1.51877 1.74095 1.89955 2.17528 2.78514 2.84695 2.91232 3.17632 3.46659 3.64255 3.71071 3.91197 4.12552 4.13701 4.30774 4.40744 4.56256 4.60370 4.65653 4.75224 4.80759 4.83873 4.89367 4.92366 5.01641 5.07392 5.26792 5.35731 5.52056 5.75243 5.83556 6.00244 6.64826 6.75495 6.78534 8.31520 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014005 B = 0.003565 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.800539 B = 7851.876824 C = 9657.089146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.046 3.954 3 N -0.483 5.483 4 C 0.231 3.769 5 N -0.600 5.600 6 C 0.515 3.485 7 O -0.534 6.534 8 C -0.123 4.123 9 H 0.154 0.846 10 C 0.056 3.944 11 O -0.377 6.377 12 C 0.064 3.936 13 H 0.060 0.940 14 C -0.143 4.143 15 C -0.143 4.143 16 S 0.168 5.832 17 C -0.275 4.275 18 S 0.046 5.954 19 C -0.638 4.638 20 H 0.076 0.924 21 C 0.003 3.997 22 N -0.896 5.896 23 Si 1.121 2.879 24 H -0.267 1.267 25 H -0.266 1.266 26 H -0.266 1.266 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.438 0.562 31 H 0.054 0.946 32 H 0.137 0.863 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.950 21.146 -0.173 23.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.095 4.095 3 N -0.205 5.205 4 C -0.141 4.141 5 N -0.252 5.252 6 C 0.302 3.698 7 O -0.409 6.409 8 C -0.145 4.145 9 H 0.172 0.828 10 C -0.021 4.021 11 O -0.297 6.297 12 C 0.007 3.993 13 H 0.079 0.921 14 C -0.200 4.200 15 C -0.181 4.181 16 S 0.413 5.587 17 C -0.510 4.510 18 S 0.292 5.708 19 C -0.786 4.786 20 H 0.094 0.906 21 C -0.203 4.203 22 N -0.530 5.530 23 Si 0.938 3.062 24 H -0.192 1.192 25 H -0.191 1.191 26 H -0.191 1.191 27 H 0.099 0.901 28 H 0.108 0.892 29 H 0.085 0.915 30 H 0.280 0.720 31 H 0.073 0.927 32 H 0.155 0.845 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.125 0.875 37 H 0.100 0.900 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.509 18.463 -0.259 21.758 hybrid contribution -0.754 1.816 0.022 1.967 sum 10.755 20.279 -0.236 22.956 Atomic orbital electron populations 1.20275 0.85558 1.03270 1.03244 1.19763 0.98526 0.84130 1.07065 1.66069 1.02689 1.31074 1.20624 1.24229 0.90310 0.93181 1.06416 1.42603 1.03912 1.07997 1.70649 1.21533 0.81746 0.91960 0.74530 1.90706 1.77173 1.24540 1.48531 1.22760 0.93468 0.94260 1.03974 0.82806 1.23505 0.85707 1.00373 0.92562 1.89154 1.17581 1.36022 1.86910 1.23135 0.93475 0.87357 0.95365 0.92148 1.21804 0.92140 1.02959 1.03109 1.23090 0.92497 1.02910 0.99639 1.86094 1.01779 0.97910 1.72919 1.28179 1.01919 1.04541 1.16391 1.82354 1.12572 0.89254 1.86582 1.24350 0.93621 0.97028 1.63614 0.90634 1.27558 1.06605 0.95362 0.90778 1.71052 0.98455 1.39071 1.44417 0.82907 0.69610 0.75091 0.78561 1.19173 1.19056 1.19115 0.90147 0.89171 0.91466 0.71975 0.92730 0.84546 0.89938 0.91758 0.90905 0.87543 0.89957 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.09 10.02 71.24 0.71 -1.38 16 2 C 0.05 1.86 6.73 41.77 0.28 2.15 16 3 N -0.48 -17.68 10.55 -184.87 -1.95 -19.63 16 4 C 0.23 8.11 8.40 179.15 1.50 9.62 16 5 N -0.60 -14.37 5.39 -309.57 -1.67 -16.04 16 6 C 0.51 12.23 6.98 87.66 0.61 12.85 16 7 O -0.53 -17.76 12.80 -3.05 -0.04 -17.80 16 8 C -0.12 -1.75 3.51 -10.52 -0.04 -1.79 16 9 H 0.15 1.16 8.14 -2.39 -0.02 1.14 16 10 C 0.06 0.74 7.17 72.49 0.52 1.26 16 11 O -0.38 -6.53 11.34 -148.98 -1.69 -8.22 16 12 C 0.06 1.03 3.92 31.10 0.12 1.15 16 13 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 14 C -0.14 -1.72 9.52 71.99 0.69 -1.03 16 15 C -0.14 -2.27 6.22 31.61 0.20 -2.07 16 16 S 0.17 7.31 18.35 -56.49 -1.04 6.28 16 17 C -0.27 -12.74 6.67 67.00 0.45 -12.29 16 18 S 0.05 2.39 19.76 -56.49 -1.12 1.28 16 19 C -0.64 -36.25 9.26 67.86 0.63 -35.62 16 20 H 0.08 4.28 5.97 -2.91 -0.02 4.26 16 21 C 0.00 0.14 5.49 84.74 0.46 0.61 16 22 N -0.90 -52.95 13.68 21.59 0.30 -52.65 16 23 Si 1.12 48.90 29.91 68.60 2.05 50.95 16 24 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 25 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 26 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 27 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.07 2.27 7.37 -2.39 -0.02 2.25 16 30 H 0.44 6.74 8.82 -92.71 -0.82 5.92 16 31 H 0.05 0.87 7.86 -2.39 -0.02 0.85 16 32 H 0.14 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.11 1.24 7.87 -2.39 -0.02 1.22 16 37 H 0.08 1.74 6.50 -2.39 -0.02 1.73 16 38 H 0.27 15.79 7.12 -92.71 -0.66 15.13 16 Total: -1.00 -73.15 343.64 1.38 -71.77 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 0.40 Total: 10.63 kcal Atomic # 6 Polarization: -32.70 SS G_CDS: 6.14 Total: -26.56 kcal Atomic # 7 Polarization: -85.00 SS G_CDS: -3.32 Total: -88.32 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -1.73 Total: -26.02 kcal Atomic # 14 Polarization: 48.90 SS G_CDS: 2.05 Total: 50.95 kcal Atomic # 16 Polarization: 9.70 SS G_CDS: -2.15 Total: 7.55 kcal Total: -73.15 1.38 -71.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331264548.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.556 kcal (2) G-P(sol) polarization free energy of solvation -73.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds