Wall clock time and date at job start Tue Mar 31 2020 14:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31594 * 122.22561 * 2 1 4 4 C 1.29945 * 117.13542 * 180.02562 * 3 2 1 5 5 N 1.38894 * 125.36578 * 179.97438 * 4 3 2 6 6 C 1.34779 * 119.99999 * 179.97438 * 5 4 3 7 7 O 1.21281 * 120.00172 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99946 * 180.02562 * 6 5 4 9 9 H 1.09011 * 110.43443 * 298.91437 * 8 6 5 10 10 C 1.54095 * 110.48712 * 61.45364 * 8 6 5 11 11 O 1.43746 * 107.29269 * 116.64509 * 10 8 6 12 12 C 1.44389 * 106.97205 * 26.51610 * 11 10 8 13 13 H 1.09001 * 110.61653 * 78.44029 * 12 11 10 14 14 C 1.53002 * 110.61702 * 201.27841 * 12 11 10 15 15 C 1.54809 * 110.48670 * 176.22518 * 8 6 5 16 16 S 1.76144 * 109.27246 * 359.97438 * 4 3 2 17 17 C 1.34655 * 122.23440 * 180.02562 * 2 1 3 18 18 S 1.76199 * 125.92642 * 359.95788 * 17 2 1 19 19 C 1.76205 * 99.99817 * 180.02562 * 18 17 2 20 20 H 1.07997 * 120.00086 * 359.97438 * 19 18 17 21 21 C 1.38427 * 120.00042 * 179.97438 * 19 18 17 22 22 N 1.31807 * 119.99981 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99934 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46965 * 90.00501 * 23 21 19 25 25 H 1.48497 * 109.47204 * 209.99781 * 23 21 19 26 26 H 1.48504 * 109.47404 * 330.00318 * 23 21 19 27 27 H 1.09005 * 109.47368 * 89.98097 * 1 2 3 28 28 H 1.09001 * 109.47198 * 209.97931 * 1 2 3 29 29 H 1.09005 * 109.47623 * 329.97816 * 1 2 3 30 30 H 0.96998 * 120.00128 * 0.02562 * 5 4 3 31 31 H 1.09001 * 109.88095 * 236.07166 * 10 8 6 32 32 H 1.09002 * 109.88122 * 357.22620 * 10 8 6 33 33 H 1.09002 * 109.46564 * 58.54694 * 14 12 11 34 34 H 1.08990 * 109.46972 * 178.54582 * 14 12 11 35 35 H 1.09003 * 109.46887 * 298.54780 * 14 12 11 36 36 H 1.09000 * 110.90738 * 338.64000 * 15 8 6 37 37 H 1.09006 * 110.90804 * 102.24757 * 15 8 6 38 38 H 0.97004 * 120.00167 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2087 1.1132 0.0000 4 6 3.5030 0.9979 -0.0005 5 7 4.4042 2.0548 -0.0011 6 6 5.7296 1.8102 -0.0011 7 8 6.1354 0.6673 -0.0010 8 6 6.7075 2.9569 -0.0012 9 1 6.5786 3.5669 -0.8954 10 6 6.5326 3.8149 1.2668 11 8 7.7564 3.7256 2.0154 12 6 8.8101 3.4454 1.0687 13 1 9.1018 4.3526 0.5396 14 6 10.0168 2.8234 1.7742 15 6 8.1601 2.4303 0.0944 16 16 3.9346 -0.7098 -0.0003 17 6 2.2252 -1.1390 -0.0005 18 16 1.5697 -2.7745 -0.0002 19 6 3.0666 -3.7040 -0.0004 20 1 4.0188 -3.1943 -0.0011 21 6 3.0223 -5.0876 0.0003 22 7 1.8603 -5.7097 0.0006 23 14 4.6092 -6.0729 -0.0006 24 1 5.0309 -6.3335 1.3993 25 1 4.3896 -7.3645 -0.6998 26 1 5.6688 -5.3043 -0.7019 27 1 -0.3634 0.0003 -1.0277 28 1 -0.3634 -0.8902 0.5135 29 1 -0.3634 0.8898 0.5142 30 1 4.0798 2.9689 -0.0008 31 1 6.3425 4.8518 0.9894 32 1 5.7047 3.4310 1.8629 33 1 9.7109 1.9053 2.2759 34 1 10.7895 2.5961 1.0399 35 1 10.4096 3.5257 2.5095 36 1 8.1821 1.4230 0.5103 37 1 8.6489 2.4583 -0.8796 38 1 1.8291 -6.6793 0.0015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331264554.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:29 Heat of formation + Delta-G solvation = -50.318971 kcal Electronic energy + Delta-G solvation = -22769.154540 eV Core-core repulsion = 19250.242886 eV Total energy + Delta-G solvation = -3518.911654 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.84303 -39.14355 -38.38731 -34.85999 -32.83351 -32.71210 -32.16630 -30.38766 -27.13415 -26.49484 -25.78084 -24.71612 -22.56150 -21.51588 -20.88846 -19.52887 -18.14311 -17.65441 -17.30368 -16.69323 -16.06400 -15.77156 -15.34704 -15.20984 -15.11416 -14.44037 -14.08653 -13.93130 -13.60306 -13.21397 -12.73320 -12.72051 -12.58985 -12.18378 -12.12557 -11.88790 -11.62088 -11.46030 -11.39817 -11.27126 -11.22324 -11.08007 -10.81967 -10.60797 -10.27305 -10.14335 -9.77549 -9.54704 -9.09079 -8.76895 -8.67312 -7.82392 -6.61090 -6.51895 -4.28977 1.35226 1.86164 2.37050 2.51058 2.80476 3.07217 3.09504 3.16599 3.34275 3.45827 3.60795 3.95729 3.97139 4.32813 4.48980 4.61824 4.77474 4.81670 4.87441 5.02451 5.06616 5.18550 5.20640 5.27342 5.40584 5.47966 5.62047 5.83536 5.91743 5.96769 6.12129 6.22202 6.43317 6.47213 6.53628 6.93523 7.12920 7.32170 7.90117 8.03202 8.49488 8.87501 10.44679 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.013699 B = 0.003624 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.479956 B = 7724.094694 C = 9524.058278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.019 3.981 3 N -0.474 5.474 4 C 0.184 3.816 5 N -0.614 5.614 6 C 0.514 3.486 7 O -0.498 6.498 8 C -0.138 4.138 9 H 0.117 0.883 10 C 0.057 3.943 11 O -0.369 6.369 12 C 0.071 3.929 13 H 0.072 0.928 14 C -0.148 4.148 15 C -0.137 4.137 16 S 0.200 5.800 17 C -0.250 4.250 18 S 0.151 5.849 19 C -0.557 4.557 20 H 0.089 0.911 21 C 0.082 3.918 22 N -0.863 5.863 23 Si 0.924 3.076 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.265 1.265 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.414 0.586 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.685 17.775 -0.263 20.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.124 4.124 3 N -0.195 5.195 4 C -0.186 4.186 5 N -0.263 5.263 6 C 0.298 3.702 7 O -0.372 6.372 8 C -0.160 4.160 9 H 0.135 0.865 10 C -0.021 4.021 11 O -0.288 6.288 12 C 0.014 3.986 13 H 0.090 0.910 14 C -0.205 4.205 15 C -0.175 4.175 16 S 0.444 5.556 17 C -0.487 4.487 18 S 0.401 5.599 19 C -0.705 4.705 20 H 0.107 0.893 21 C -0.129 4.129 22 N -0.496 5.496 23 Si 0.749 3.251 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.189 1.189 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.251 0.749 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.120 0.880 37 H 0.106 0.894 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.488 16.160 -0.037 18.740 hybrid contribution 0.978 0.446 -0.335 1.126 sum 10.466 16.606 -0.372 19.632 Atomic orbital electron populations 1.20117 0.88030 1.02133 1.01791 1.19029 0.96704 0.84571 1.12103 1.65808 1.02815 1.32418 1.18465 1.23765 0.89886 0.92885 1.12107 1.42385 1.04381 1.08097 1.71456 1.20502 0.81761 0.91176 0.76714 1.90704 1.76863 1.22326 1.47283 1.22677 0.95710 0.95886 1.01690 0.86499 1.23145 0.89063 0.98811 0.91062 1.88932 1.15858 1.92652 1.31373 1.23200 0.89176 0.96710 0.89515 0.90981 1.21777 0.95961 1.01653 1.01083 1.23225 0.91354 1.01714 1.01163 1.85840 1.01806 0.95401 1.72555 1.28776 1.01256 1.06761 1.11910 1.83073 1.11015 0.84379 1.81401 1.23265 0.93579 0.94056 1.59645 0.89339 1.25024 0.98282 0.96661 0.92892 1.70012 1.24409 1.10341 1.44822 0.86034 0.81245 0.78775 0.79048 1.19586 1.20249 1.18898 0.91877 0.91037 0.91921 0.74874 0.90886 0.89252 0.91408 0.90894 0.91732 0.87985 0.89365 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.07 10.02 36.00 0.36 -0.71 16 2 C 0.02 0.39 6.73 -83.97 -0.57 -0.18 16 3 N -0.47 -9.42 10.55 -9.78 -0.10 -9.52 16 4 C 0.18 3.50 8.40 -87.19 -0.73 2.77 16 5 N -0.61 -8.63 5.23 -11.78 -0.06 -8.69 16 6 C 0.51 7.04 6.94 -10.98 -0.08 6.96 16 7 O -0.50 -8.89 12.98 5.56 0.07 -8.81 16 8 C -0.14 -1.25 3.44 -90.24 -0.31 -1.56 16 9 H 0.12 0.71 8.14 -51.92 -0.42 0.29 16 10 C 0.06 0.49 7.30 37.73 0.28 0.77 16 11 O -0.37 -4.00 11.22 -35.23 -0.40 -4.40 16 12 C 0.07 0.60 3.97 -25.68 -0.10 0.50 16 13 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 14 C -0.15 -1.13 9.67 37.16 0.36 -0.77 16 15 C -0.14 -1.26 5.94 -24.72 -0.15 -1.41 16 16 S 0.20 4.41 18.35 -107.50 -1.97 2.43 16 17 C -0.25 -5.77 6.67 29.46 0.20 -5.58 16 18 S 0.15 3.79 20.74 -107.50 -2.23 1.56 16 19 C -0.56 -15.19 9.26 30.80 0.29 -14.90 16 20 H 0.09 2.40 5.97 -52.49 -0.31 2.09 16 21 C 0.08 2.20 5.49 -17.49 -0.10 2.11 16 22 N -0.86 -23.78 13.22 55.47 0.73 -23.05 16 23 Si 0.92 20.71 29.55 -169.99 -5.02 15.68 16 24 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 25 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.26 -5.91 7.11 56.52 0.40 -5.51 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.07 1.25 7.37 -51.93 -0.38 0.86 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.41 4.29 8.80 -40.82 -0.36 3.93 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.84 7.59 -51.93 -0.39 0.44 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.10 1.21 6.84 -51.93 -0.36 0.86 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.28 7.08 8.32 -40.82 -0.34 6.74 16 LS Contribution 345.17 15.07 5.20 5.20 Total: -1.00 -32.30 345.17 -9.07 -41.37 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -4.74 Total: 0.23 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -0.55 Total: -12.00 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 0.57 Total: -41.26 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: -0.32 Total: -13.21 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 8.20 SS G_CDS: -4.20 Total: 3.99 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.30 -9.07 -41.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331264554.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.949 kcal (2) G-P(sol) polarization free energy of solvation -32.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds