Wall clock time and date at job start Tue Mar 31 2020 14:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31594 * 122.22561 * 2 1 4 4 C 1.29945 * 117.13542 * 180.02562 * 3 2 1 5 5 N 1.38894 * 125.36578 * 179.97438 * 4 3 2 6 6 C 1.34779 * 119.99999 * 179.97438 * 5 4 3 7 7 O 1.21281 * 120.00172 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99946 * 180.02562 * 6 5 4 9 9 H 1.09011 * 110.43443 * 298.91437 * 8 6 5 10 10 C 1.54095 * 110.48712 * 61.45364 * 8 6 5 11 11 O 1.43746 * 107.29269 * 116.64509 * 10 8 6 12 12 C 1.44389 * 106.97205 * 26.51610 * 11 10 8 13 13 H 1.09001 * 110.61653 * 78.44029 * 12 11 10 14 14 C 1.53002 * 110.61702 * 201.27841 * 12 11 10 15 15 C 1.54809 * 110.48670 * 176.22518 * 8 6 5 16 16 S 1.76144 * 109.27246 * 359.97438 * 4 3 2 17 17 C 1.34655 * 122.23440 * 180.02562 * 2 1 3 18 18 S 1.76199 * 125.92642 * 359.95788 * 17 2 1 19 19 C 1.76205 * 99.99817 * 180.02562 * 18 17 2 20 20 H 1.07997 * 120.00086 * 359.97438 * 19 18 17 21 21 C 1.38427 * 120.00042 * 179.97438 * 19 18 17 22 22 N 1.31807 * 119.99981 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99934 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46965 * 90.00501 * 23 21 19 25 25 H 1.48497 * 109.47204 * 209.99781 * 23 21 19 26 26 H 1.48504 * 109.47404 * 330.00318 * 23 21 19 27 27 H 1.09005 * 109.47368 * 89.98097 * 1 2 3 28 28 H 1.09001 * 109.47198 * 209.97931 * 1 2 3 29 29 H 1.09005 * 109.47623 * 329.97816 * 1 2 3 30 30 H 0.96998 * 120.00128 * 0.02562 * 5 4 3 31 31 H 1.09001 * 109.88095 * 236.07166 * 10 8 6 32 32 H 1.09002 * 109.88122 * 357.22620 * 10 8 6 33 33 H 1.09002 * 109.46564 * 58.54694 * 14 12 11 34 34 H 1.08990 * 109.46972 * 178.54582 * 14 12 11 35 35 H 1.09003 * 109.46887 * 298.54780 * 14 12 11 36 36 H 1.09000 * 110.90738 * 338.64000 * 15 8 6 37 37 H 1.09006 * 110.90804 * 102.24757 * 15 8 6 38 38 H 0.97004 * 120.00167 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2087 1.1132 0.0000 4 6 3.5030 0.9979 -0.0005 5 7 4.4042 2.0548 -0.0011 6 6 5.7296 1.8102 -0.0011 7 8 6.1354 0.6673 -0.0010 8 6 6.7075 2.9569 -0.0012 9 1 6.5786 3.5669 -0.8954 10 6 6.5326 3.8149 1.2668 11 8 7.7564 3.7256 2.0154 12 6 8.8101 3.4454 1.0687 13 1 9.1018 4.3526 0.5396 14 6 10.0168 2.8234 1.7742 15 6 8.1601 2.4303 0.0944 16 16 3.9346 -0.7098 -0.0003 17 6 2.2252 -1.1390 -0.0005 18 16 1.5697 -2.7745 -0.0002 19 6 3.0666 -3.7040 -0.0004 20 1 4.0188 -3.1943 -0.0011 21 6 3.0223 -5.0876 0.0003 22 7 1.8603 -5.7097 0.0006 23 14 4.6092 -6.0729 -0.0006 24 1 5.0309 -6.3335 1.3993 25 1 4.3896 -7.3645 -0.6998 26 1 5.6688 -5.3043 -0.7019 27 1 -0.3634 0.0003 -1.0277 28 1 -0.3634 -0.8902 0.5135 29 1 -0.3634 0.8898 0.5142 30 1 4.0798 2.9689 -0.0008 31 1 6.3425 4.8518 0.9894 32 1 5.7047 3.4310 1.8629 33 1 9.7109 1.9053 2.2759 34 1 10.7895 2.5961 1.0399 35 1 10.4096 3.5257 2.5095 36 1 8.1821 1.4230 0.5103 37 1 8.6489 2.4583 -0.8796 38 1 1.8291 -6.6793 0.0015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331264554.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:29 Heat of formation + Delta-G solvation = -72.170737 kcal Electronic energy + Delta-G solvation = -22770.102104 eV Core-core repulsion = 19250.242886 eV Total energy + Delta-G solvation = -3519.859218 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.91160 -40.42072 -39.65326 -36.23084 -34.83032 -33.53853 -32.91621 -31.80074 -28.80566 -27.73564 -27.22447 -25.87951 -23.76241 -22.36909 -22.08695 -20.99175 -19.76036 -19.16881 -18.27519 -17.81518 -17.47688 -17.08580 -16.74291 -16.54961 -16.29301 -15.72743 -15.46765 -15.16054 -14.95462 -14.43055 -14.33468 -13.61008 -13.44063 -13.34443 -13.29050 -13.25146 -13.08404 -12.90854 -12.84901 -12.47568 -12.30452 -12.13849 -12.07703 -12.04886 -11.86865 -11.38521 -11.36013 -10.85594 -10.60492 -10.49709 -10.47350 -9.54859 -8.58973 -8.38634 -6.31439 -0.25705 0.19854 0.80838 1.13452 1.25447 1.32907 1.38991 1.47705 1.63015 1.99126 2.13255 2.80306 2.81343 3.07997 3.14876 3.44290 3.74452 3.83507 3.95404 4.14042 4.23685 4.42223 4.45852 4.57156 4.65413 4.68284 4.82247 4.83366 4.84249 4.94835 4.98137 5.03809 5.17359 5.28160 5.28463 5.46079 5.86422 5.94057 6.00751 6.72158 6.84686 6.85832 8.48857 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.013699 B = 0.003624 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.479956 B = 7724.094694 C = 9524.058278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.037 3.963 3 N -0.481 5.481 4 C 0.225 3.775 5 N -0.602 5.602 6 C 0.512 3.488 7 O -0.537 6.537 8 C -0.125 4.125 9 H 0.162 0.838 10 C 0.055 3.945 11 O -0.398 6.398 12 C 0.072 3.928 13 H 0.103 0.897 14 C -0.150 4.150 15 C -0.140 4.140 16 S 0.154 5.846 17 C -0.281 4.281 18 S 0.100 5.900 19 C -0.577 4.577 20 H 0.080 0.920 21 C 0.036 3.964 22 N -0.895 5.895 23 Si 0.985 3.015 24 H -0.264 1.264 25 H -0.263 1.263 26 H -0.268 1.268 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.437 0.563 31 H 0.112 0.888 32 H 0.076 0.924 33 H 0.044 0.956 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.110 0.890 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.032 21.159 -0.913 23.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.104 4.104 3 N -0.202 5.202 4 C -0.147 4.147 5 N -0.254 5.254 6 C 0.300 3.700 7 O -0.413 6.413 8 C -0.146 4.146 9 H 0.180 0.820 10 C -0.022 4.022 11 O -0.318 6.318 12 C 0.015 3.985 13 H 0.120 0.880 14 C -0.207 4.207 15 C -0.178 4.178 16 S 0.398 5.602 17 C -0.516 4.516 18 S 0.348 5.652 19 C -0.725 4.725 20 H 0.098 0.902 21 C -0.171 4.171 22 N -0.530 5.530 23 Si 0.806 3.194 24 H -0.189 1.189 25 H -0.187 1.187 26 H -0.192 1.192 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.106 0.894 30 H 0.279 0.721 31 H 0.130 0.870 32 H 0.095 0.905 33 H 0.064 0.936 34 H 0.109 0.891 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.129 0.871 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.846 19.617 -0.684 22.426 hybrid contribution 0.679 -0.241 -0.115 0.730 sum 11.525 19.376 -0.799 22.559 Atomic orbital electron populations 1.20249 0.85633 1.03151 1.03131 1.19708 0.98437 0.84152 1.08146 1.66031 1.02647 1.31298 1.20272 1.24137 0.90252 0.93000 1.07356 1.42586 1.03966 1.07952 1.70847 1.21613 0.81798 0.92029 0.74580 1.90711 1.77324 1.24679 1.48566 1.22830 0.93562 0.94155 1.04037 0.82016 1.23310 0.88056 1.00650 0.90185 1.88913 1.17047 1.92857 1.32955 1.23375 0.88565 0.97521 0.89010 0.87961 1.21822 0.96502 1.00734 1.01644 1.23252 0.91989 1.00199 1.02403 1.86056 1.02374 0.98310 1.73423 1.28585 1.01601 1.06056 1.15402 1.82877 1.11168 0.86211 1.84945 1.23446 0.93860 0.94868 1.60324 0.90230 1.25872 1.01382 0.97405 0.92461 1.70089 1.26116 1.10758 1.46031 0.85143 0.77254 0.77675 0.79339 1.18861 1.18698 1.19202 0.90258 0.91415 0.89435 0.72133 0.86977 0.90531 0.93634 0.89077 0.91258 0.91449 0.87139 0.90873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.09 10.02 71.23 0.71 -1.38 16 2 C 0.04 1.53 6.73 41.77 0.28 1.81 16 3 N -0.48 -18.21 10.55 -184.87 -1.95 -20.16 16 4 C 0.23 8.23 8.40 179.15 1.50 9.74 16 5 N -0.60 -15.28 5.23 -309.57 -1.62 -16.90 16 6 C 0.51 12.95 6.94 87.66 0.61 13.56 16 7 O -0.54 -18.98 12.98 -3.03 -0.04 -19.02 16 8 C -0.12 -1.79 3.44 -10.55 -0.04 -1.82 16 9 H 0.16 0.98 8.14 -2.38 -0.02 0.96 16 10 C 0.06 0.75 7.30 72.35 0.53 1.27 16 11 O -0.40 -7.62 11.22 -148.98 -1.67 -9.29 16 12 C 0.07 1.00 3.97 31.28 0.12 1.12 16 13 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 14 C -0.15 -2.07 9.67 71.98 0.70 -1.38 16 15 C -0.14 -2.24 5.94 31.89 0.19 -2.05 16 16 S 0.15 6.91 18.35 -56.49 -1.04 5.87 16 17 C -0.28 -13.27 6.67 67.00 0.45 -12.82 16 18 S 0.10 5.28 20.74 -56.49 -1.17 4.11 16 19 C -0.58 -32.88 9.26 67.86 0.63 -32.25 16 20 H 0.08 4.54 5.97 -2.91 -0.02 4.52 16 21 C 0.04 1.99 5.49 84.74 0.46 2.46 16 22 N -0.90 -50.97 13.22 21.59 0.29 -50.69 16 23 Si 0.98 43.45 29.55 68.60 2.03 45.48 16 24 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 25 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 26 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 27 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 28 H 0.07 2.35 7.37 -2.39 -0.02 2.33 16 29 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 30 H 0.44 7.29 8.80 -92.71 -0.82 6.48 16 31 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.08 1.22 7.59 -2.39 -0.02 1.20 16 33 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.07 1.58 6.84 -2.39 -0.02 1.57 16 37 H 0.11 1.25 8.14 -2.38 -0.02 1.23 16 38 H 0.28 14.77 8.32 -92.70 -0.77 14.00 16 Total: -1.00 -74.07 345.17 1.26 -72.80 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 0.29 Total: 9.54 kcal Atomic # 6 Polarization: -27.89 SS G_CDS: 6.15 Total: -21.74 kcal Atomic # 7 Polarization: -84.46 SS G_CDS: -3.28 Total: -87.74 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -1.71 Total: -28.32 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: 12.19 SS G_CDS: -2.21 Total: 9.98 kcal Total: -74.07 1.26 -72.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331264554.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.634 kcal (2) G-P(sol) polarization free energy of solvation -74.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds