Wall clock time and date at job start Tue Mar 31 2020 14:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31590 * 122.23023 * 2 1 4 4 C 1.29949 * 117.13625 * 180.02562 * 3 2 1 5 5 N 1.38884 * 125.36799 * 180.26504 * 4 3 2 6 6 C 1.34778 * 120.00744 * 179.71809 * 5 4 3 7 7 O 1.21290 * 119.99494 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00472 * 179.97438 * 6 5 4 9 9 H 1.08999 * 110.46012 * 298.84927 * 8 6 5 10 10 C 1.54478 * 110.50972 * 61.45319 * 8 6 5 11 11 O 1.44425 * 104.80256 * 142.62350 * 10 8 6 12 12 C 1.44429 * 105.27477 * 319.48696 * 11 10 8 13 13 H 1.08994 * 110.37245 * 281.56857 * 12 11 10 14 14 C 1.52999 * 110.37097 * 159.34370 * 12 11 10 15 15 C 1.54479 * 104.80174 * 40.51485 * 12 11 10 16 16 S 1.76149 * 109.26915 * 359.97438 * 4 3 2 17 17 C 1.34653 * 122.22567 * 180.02562 * 2 1 3 18 18 S 1.76202 * 125.93653 * 359.95970 * 17 2 1 19 19 C 1.76192 * 100.00337 * 179.97438 * 18 17 2 20 20 H 1.08002 * 119.99879 * 0.02562 * 19 18 17 21 21 C 1.38427 * 120.00141 * 179.97438 * 19 18 17 22 22 N 1.31813 * 120.00025 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00139 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47190 * 90.00638 * 23 21 19 25 25 H 1.48502 * 109.47089 * 210.00473 * 23 21 19 26 26 H 1.48503 * 109.47122 * 330.00293 * 23 21 19 27 27 H 1.08998 * 109.47230 * 269.97857 * 1 2 3 28 28 H 1.09001 * 109.47118 * 29.97621 * 1 2 3 29 29 H 1.08996 * 109.47557 * 149.97804 * 1 2 3 30 30 H 0.97002 * 119.99621 * 359.71591 * 5 4 3 31 31 H 1.08996 * 110.37005 * 261.45162 * 10 8 6 32 32 H 1.09000 * 110.37365 * 23.68425 * 10 8 6 33 33 H 1.09002 * 109.47226 * 61.45086 * 14 12 11 34 34 H 1.08993 * 109.47042 * 181.45461 * 14 12 11 35 35 H 1.09004 * 109.47262 * 301.45467 * 14 12 11 36 36 H 1.09004 * 110.50793 * 217.37717 * 15 12 11 37 37 H 1.08997 * 110.51019 * 94.66573 * 15 12 11 38 38 H 0.97001 * 120.00478 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1131 0.0000 4 6 3.5031 0.9978 -0.0005 5 7 4.4044 2.0544 0.0046 6 6 5.7298 1.8098 0.0092 7 8 6.1355 0.6668 0.0093 8 6 6.7077 2.9564 0.0142 9 1 6.5833 3.5672 -0.8800 10 6 6.5281 3.8154 1.2856 11 8 7.8673 4.2075 1.6582 12 6 8.6819 3.0351 1.4390 13 1 8.5559 2.3271 2.2581 14 6 10.1537 3.4281 1.2977 15 6 8.1572 2.4313 0.1175 16 16 3.9345 -0.7101 -0.0003 17 6 2.2250 -1.1391 -0.0005 18 16 1.5696 -2.7747 -0.0002 19 6 3.0664 -3.7042 -0.0020 20 1 4.0186 -3.1945 -0.0024 21 6 3.0219 -5.0878 -0.0017 22 7 1.8598 -5.7098 -0.0007 23 14 4.6088 -6.0732 -0.0043 24 1 5.0316 -6.3343 1.3951 25 1 4.3885 -7.3645 -0.7039 26 1 5.6678 -5.3044 -0.7062 27 1 -0.3633 -0.0004 1.0276 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3634 -0.8897 -0.5141 30 1 4.0800 2.9686 0.0049 31 1 5.9223 4.6947 1.0669 32 1 6.0686 3.2266 2.0795 33 1 10.4930 3.9032 2.2182 34 1 10.7512 2.5366 1.1073 35 1 10.2657 4.1247 0.4668 36 1 8.1664 1.3424 0.1649 37 1 8.7518 2.7830 -0.7256 38 1 1.8286 -6.6794 -0.0009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331264555.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:32 Heat of formation + Delta-G solvation = -50.786044 kcal Electronic energy + Delta-G solvation = -22742.951990 eV Core-core repulsion = 19224.020082 eV Total energy + Delta-G solvation = -3518.931908 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.85955 -39.15499 -38.40624 -34.88260 -32.84757 -32.69228 -32.15730 -30.40046 -27.14676 -26.42412 -25.79578 -24.70765 -22.64596 -21.58270 -20.82053 -19.56648 -18.25881 -17.78294 -17.13936 -16.38809 -16.00593 -15.78445 -15.63224 -15.20782 -15.12813 -14.55280 -14.10424 -13.90050 -13.47710 -13.21987 -12.89301 -12.71552 -12.51057 -12.35892 -12.12518 -11.90391 -11.75175 -11.41504 -11.28449 -11.22685 -11.14273 -11.09097 -10.80650 -10.63151 -10.28667 -10.13488 -9.90946 -9.56447 -9.10670 -8.78649 -8.68957 -7.84308 -6.62540 -6.53530 -4.30499 1.32995 1.84336 2.34990 2.48904 2.78518 3.05583 3.08261 3.15352 3.32408 3.52444 3.58847 3.95721 4.01386 4.34617 4.45062 4.61768 4.80204 4.83991 4.87511 5.00917 5.06086 5.16841 5.22884 5.30516 5.39715 5.54138 5.70822 5.74148 5.83415 5.95401 6.10676 6.21153 6.41843 6.45217 6.46774 6.91903 7.10946 7.30597 7.87576 8.01584 8.47937 8.85976 10.43221 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014069 B = 0.003550 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.652004 B = 7885.148805 C = 9680.746536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.019 3.981 3 N -0.473 5.473 4 C 0.183 3.817 5 N -0.613 5.613 6 C 0.512 3.488 7 O -0.500 6.500 8 C -0.136 4.136 9 H 0.117 0.883 10 C 0.056 3.944 11 O -0.367 6.367 12 C 0.068 3.932 13 H 0.073 0.927 14 C -0.146 4.146 15 C -0.142 4.142 16 S 0.199 5.801 17 C -0.250 4.250 18 S 0.151 5.849 19 C -0.557 4.557 20 H 0.089 0.911 21 C 0.082 3.918 22 N -0.863 5.863 23 Si 0.925 3.075 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.265 1.265 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.414 0.586 31 H 0.103 0.897 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.261 16.757 0.598 19.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.124 4.124 3 N -0.194 5.194 4 C -0.187 4.187 5 N -0.261 5.261 6 C 0.297 3.703 7 O -0.374 6.374 8 C -0.158 4.158 9 H 0.135 0.865 10 C -0.022 4.022 11 O -0.286 6.286 12 C 0.010 3.990 13 H 0.091 0.909 14 C -0.203 4.203 15 C -0.180 4.180 16 S 0.443 5.557 17 C -0.487 4.487 18 S 0.402 5.598 19 C -0.706 4.706 20 H 0.107 0.893 21 C -0.129 4.129 22 N -0.496 5.496 23 Si 0.749 3.251 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.189 1.189 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.252 0.748 31 H 0.121 0.879 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.123 0.877 37 H 0.103 0.897 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.116 15.327 0.676 17.846 hybrid contribution 0.949 0.218 -0.138 0.983 sum 10.065 15.545 0.537 18.527 Atomic orbital electron populations 1.20118 0.88021 1.02133 1.01815 1.19030 0.96711 0.84565 1.12096 1.65807 1.02819 1.32421 1.18397 1.23770 0.89895 0.92877 1.12189 1.42376 1.04349 1.08122 1.71283 1.20545 0.81830 0.91227 0.76695 1.90694 1.76793 1.22355 1.47546 1.22641 0.95278 0.95596 1.02258 0.86511 1.23370 0.86244 0.98777 0.93805 1.89150 1.17921 1.34059 1.87479 1.23085 0.92251 0.87187 0.96441 0.90869 1.21802 0.93318 1.02306 1.02879 1.23068 0.92371 1.04042 0.98514 1.85825 1.01848 0.95408 1.72608 1.28778 1.01232 1.06768 1.11900 1.83080 1.11006 0.84367 1.81335 1.23263 0.93578 0.94057 1.59670 0.89339 1.25028 0.98291 0.96666 0.92888 1.70012 1.24411 1.10361 1.44777 0.86031 0.81227 0.78787 0.79038 1.19593 1.20240 1.18897 0.91857 0.91916 0.91037 0.74828 0.87916 0.91454 0.91770 0.90867 0.91725 0.87672 0.89671 0.91274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.06 10.02 36.01 0.36 -0.70 16 2 C 0.02 0.39 6.73 -83.97 -0.57 -0.18 16 3 N -0.47 -9.31 10.55 -9.78 -0.10 -9.41 16 4 C 0.18 3.43 8.40 -87.20 -0.73 2.70 16 5 N -0.61 -8.45 5.34 -11.78 -0.06 -8.51 16 6 C 0.51 6.84 7.00 -10.99 -0.08 6.76 16 7 O -0.50 -8.65 12.81 5.55 0.07 -8.58 16 8 C -0.14 -1.24 3.51 -90.21 -0.32 -1.56 16 9 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 10 C 0.06 0.47 7.11 37.93 0.27 0.74 16 11 O -0.37 -3.75 11.34 -35.23 -0.40 -4.15 16 12 C 0.07 0.62 3.92 -25.96 -0.10 0.52 16 13 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 14 C -0.15 -1.05 9.52 37.16 0.35 -0.70 16 15 C -0.14 -1.32 6.21 -25.16 -0.16 -1.48 16 16 S 0.20 4.33 18.35 -107.50 -1.97 2.35 16 17 C -0.25 -5.71 6.67 29.46 0.20 -5.51 16 18 S 0.15 3.78 20.74 -107.50 -2.23 1.55 16 19 C -0.56 -15.08 9.26 30.80 0.29 -14.79 16 20 H 0.09 2.38 5.97 -52.49 -0.31 2.07 16 21 C 0.08 2.19 5.49 -17.49 -0.10 2.09 16 22 N -0.86 -23.65 13.22 55.47 0.73 -22.91 16 23 Si 0.92 20.55 29.55 -169.99 -5.02 15.52 16 24 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 25 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 26 H -0.26 -5.86 7.11 56.52 0.40 -5.46 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.07 1.24 7.38 -51.93 -0.38 0.85 16 30 H 0.41 4.22 8.80 -40.82 -0.36 3.86 16 31 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.62 7.86 -51.93 -0.41 0.22 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.44 8.12 -51.93 -0.42 0.02 16 36 H 0.10 1.19 6.51 -51.93 -0.34 0.85 16 37 H 0.08 0.66 7.86 -51.93 -0.41 0.25 16 38 H 0.28 7.05 8.32 -40.82 -0.34 6.71 16 LS Contribution 344.90 15.07 5.20 5.20 Total: -1.00 -31.61 344.90 -9.09 -40.71 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -4.73 Total: 0.35 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: -0.58 Total: -12.11 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: 0.57 Total: -40.84 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -0.33 Total: -12.73 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 8.10 SS G_CDS: -4.20 Total: 3.90 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.61 -9.09 -40.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331264555.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.080 kcal (2) G-P(sol) polarization free energy of solvation -31.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds