Wall clock time and date at job start Tue Mar 31 2020 14:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31590 * 122.23023 * 2 1 4 4 C 1.29949 * 117.13625 * 180.02562 * 3 2 1 5 5 N 1.38884 * 125.36799 * 180.26504 * 4 3 2 6 6 C 1.34778 * 120.00744 * 179.71809 * 5 4 3 7 7 O 1.21290 * 119.99494 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00472 * 179.97438 * 6 5 4 9 9 H 1.08999 * 110.46012 * 298.84927 * 8 6 5 10 10 C 1.54478 * 110.50972 * 61.45319 * 8 6 5 11 11 O 1.44425 * 104.80256 * 142.62350 * 10 8 6 12 12 C 1.44429 * 105.27477 * 319.48696 * 11 10 8 13 13 H 1.08994 * 110.37245 * 281.56857 * 12 11 10 14 14 C 1.52999 * 110.37097 * 159.34370 * 12 11 10 15 15 C 1.54479 * 104.80174 * 40.51485 * 12 11 10 16 16 S 1.76149 * 109.26915 * 359.97438 * 4 3 2 17 17 C 1.34653 * 122.22567 * 180.02562 * 2 1 3 18 18 S 1.76202 * 125.93653 * 359.95970 * 17 2 1 19 19 C 1.76192 * 100.00337 * 179.97438 * 18 17 2 20 20 H 1.08002 * 119.99879 * 0.02562 * 19 18 17 21 21 C 1.38427 * 120.00141 * 179.97438 * 19 18 17 22 22 N 1.31813 * 120.00025 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00139 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47190 * 90.00638 * 23 21 19 25 25 H 1.48502 * 109.47089 * 210.00473 * 23 21 19 26 26 H 1.48503 * 109.47122 * 330.00293 * 23 21 19 27 27 H 1.08998 * 109.47230 * 269.97857 * 1 2 3 28 28 H 1.09001 * 109.47118 * 29.97621 * 1 2 3 29 29 H 1.08996 * 109.47557 * 149.97804 * 1 2 3 30 30 H 0.97002 * 119.99621 * 359.71591 * 5 4 3 31 31 H 1.08996 * 110.37005 * 261.45162 * 10 8 6 32 32 H 1.09000 * 110.37365 * 23.68425 * 10 8 6 33 33 H 1.09002 * 109.47226 * 61.45086 * 14 12 11 34 34 H 1.08993 * 109.47042 * 181.45461 * 14 12 11 35 35 H 1.09004 * 109.47262 * 301.45467 * 14 12 11 36 36 H 1.09004 * 110.50793 * 217.37717 * 15 12 11 37 37 H 1.08997 * 110.51019 * 94.66573 * 15 12 11 38 38 H 0.97001 * 120.00478 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1131 0.0000 4 6 3.5031 0.9978 -0.0005 5 7 4.4044 2.0544 0.0046 6 6 5.7298 1.8098 0.0092 7 8 6.1355 0.6668 0.0093 8 6 6.7077 2.9564 0.0142 9 1 6.5833 3.5672 -0.8800 10 6 6.5281 3.8154 1.2856 11 8 7.8673 4.2075 1.6582 12 6 8.6819 3.0351 1.4390 13 1 8.5559 2.3271 2.2581 14 6 10.1537 3.4281 1.2977 15 6 8.1572 2.4313 0.1175 16 16 3.9345 -0.7101 -0.0003 17 6 2.2250 -1.1391 -0.0005 18 16 1.5696 -2.7747 -0.0002 19 6 3.0664 -3.7042 -0.0020 20 1 4.0186 -3.1945 -0.0024 21 6 3.0219 -5.0878 -0.0017 22 7 1.8598 -5.7098 -0.0007 23 14 4.6088 -6.0732 -0.0043 24 1 5.0316 -6.3343 1.3951 25 1 4.3885 -7.3645 -0.7039 26 1 5.6678 -5.3044 -0.7062 27 1 -0.3633 -0.0004 1.0276 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3634 -0.8897 -0.5141 30 1 4.0800 2.9686 0.0049 31 1 5.9223 4.6947 1.0669 32 1 6.0686 3.2266 2.0795 33 1 10.4930 3.9032 2.2182 34 1 10.7512 2.5366 1.1073 35 1 10.2657 4.1247 0.4668 36 1 8.1664 1.3424 0.1649 37 1 8.7518 2.7830 -0.7256 38 1 1.8286 -6.6794 -0.0009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331264555.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:31 Heat of formation + Delta-G solvation = -71.736262 kcal Electronic energy + Delta-G solvation = -22743.860460 eV Core-core repulsion = 19224.020082 eV Total energy + Delta-G solvation = -3519.840377 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.93118 -40.42846 -39.66824 -36.23497 -34.82600 -33.52643 -32.92201 -31.80069 -28.80263 -27.73201 -27.15048 -25.86523 -23.79216 -22.53130 -22.03518 -20.95565 -19.80657 -19.21739 -18.51187 -17.48721 -17.23120 -17.08752 -16.83093 -16.64464 -16.26588 -15.86919 -15.54764 -15.15039 -14.95252 -14.41667 -14.19582 -13.66878 -13.50759 -13.40912 -13.29910 -13.15412 -13.07724 -12.98707 -12.88634 -12.51845 -12.28685 -12.15373 -12.04586 -11.91155 -11.84486 -11.35825 -11.29908 -10.86304 -10.80331 -10.49888 -10.48694 -9.54433 -8.58620 -8.38470 -6.31132 -0.25664 0.20054 0.80879 1.12159 1.25819 1.33403 1.39392 1.47545 1.62678 1.99445 2.13593 2.80310 2.80728 3.08416 3.19794 3.52327 3.65798 3.78211 3.92561 4.14494 4.14732 4.41458 4.42968 4.62053 4.63762 4.68932 4.81590 4.84474 4.89455 4.94562 4.98322 5.05891 5.08740 5.27094 5.28453 5.46188 5.76353 5.89707 6.01026 6.71023 6.84961 6.86158 8.49162 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014069 B = 0.003550 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.652004 B = 7885.148805 C = 9680.746536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.037 3.963 3 N -0.481 5.481 4 C 0.225 3.775 5 N -0.600 5.600 6 C 0.514 3.486 7 O -0.536 6.536 8 C -0.123 4.123 9 H 0.154 0.846 10 C 0.055 3.945 11 O -0.378 6.378 12 C 0.064 3.936 13 H 0.061 0.939 14 C -0.143 4.143 15 C -0.143 4.143 16 S 0.156 5.844 17 C -0.281 4.281 18 S 0.100 5.900 19 C -0.576 4.576 20 H 0.081 0.919 21 C 0.036 3.964 22 N -0.896 5.896 23 Si 0.985 3.015 24 H -0.263 1.263 25 H -0.264 1.264 26 H -0.267 1.267 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.437 0.563 31 H 0.136 0.864 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.506 19.778 0.276 22.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.104 4.104 3 N -0.202 5.202 4 C -0.148 4.148 5 N -0.252 5.252 6 C 0.302 3.698 7 O -0.411 6.411 8 C -0.145 4.145 9 H 0.171 0.829 10 C -0.023 4.023 11 O -0.297 6.297 12 C 0.007 3.993 13 H 0.079 0.921 14 C -0.200 4.200 15 C -0.181 4.181 16 S 0.401 5.599 17 C -0.516 4.516 18 S 0.347 5.653 19 C -0.724 4.724 20 H 0.098 0.902 21 C -0.172 4.172 22 N -0.530 5.530 23 Si 0.806 3.194 24 H -0.188 1.188 25 H -0.188 1.188 26 H -0.191 1.191 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.086 0.914 30 H 0.279 0.721 31 H 0.154 0.846 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.124 0.876 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.373 18.423 0.357 21.145 hybrid contribution 0.671 -0.352 -0.017 0.758 sum 11.045 18.071 0.340 21.181 Atomic orbital electron populations 1.20247 0.85688 1.03159 1.03099 1.19695 0.98415 0.84158 1.08164 1.66026 1.02686 1.31312 1.20223 1.24134 0.90240 0.92999 1.07418 1.42560 1.03917 1.07989 1.70715 1.21496 0.81788 0.91908 0.74644 1.90705 1.77216 1.24521 1.48672 1.22749 0.93395 0.93989 1.04331 0.82864 1.23520 0.86053 0.99834 0.92845 1.89153 1.18600 1.34310 1.87623 1.23141 0.93376 0.86901 0.95923 0.92119 1.21803 0.92038 1.02913 1.03257 1.23083 0.92920 1.02634 0.99449 1.86024 1.02300 0.98193 1.73402 1.28586 1.01651 1.06025 1.15369 1.82899 1.11203 0.86243 1.84912 1.23445 0.93862 0.94845 1.60291 0.90154 1.25881 1.01385 0.97433 0.92474 1.70091 1.26138 1.10757 1.46046 0.85137 0.77249 0.77643 0.79347 1.18818 1.18811 1.19142 0.90331 0.89431 0.91400 0.72120 0.84576 0.92613 0.91719 0.90001 0.90921 0.90014 0.87607 0.90889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.08 10.02 71.24 0.71 -1.36 16 2 C 0.04 1.51 6.73 41.77 0.28 1.79 16 3 N -0.48 -17.91 10.55 -184.87 -1.95 -19.86 16 4 C 0.22 8.03 8.40 179.15 1.50 9.53 16 5 N -0.60 -14.80 5.34 -309.57 -1.65 -16.45 16 6 C 0.51 12.55 7.00 87.66 0.61 13.17 16 7 O -0.54 -18.15 12.81 -3.06 -0.04 -18.19 16 8 C -0.12 -1.83 3.51 -10.53 -0.04 -1.86 16 9 H 0.15 1.28 8.14 -2.39 -0.02 1.26 16 10 C 0.05 0.74 7.11 72.48 0.52 1.25 16 11 O -0.38 -6.64 11.34 -148.98 -1.69 -8.33 16 12 C 0.06 1.05 3.92 31.10 0.12 1.17 16 13 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 14 C -0.14 -1.76 9.52 71.98 0.69 -1.08 16 15 C -0.14 -2.34 6.21 31.61 0.20 -2.14 16 16 S 0.16 6.86 18.35 -56.49 -1.04 5.83 16 17 C -0.28 -13.08 6.67 67.00 0.45 -12.63 16 18 S 0.10 5.20 20.74 -56.49 -1.17 4.03 16 19 C -0.58 -32.49 9.26 67.86 0.63 -31.86 16 20 H 0.08 4.52 5.97 -2.91 -0.02 4.50 16 21 C 0.04 1.94 5.49 84.74 0.46 2.41 16 22 N -0.90 -50.67 13.22 21.59 0.29 -50.39 16 23 Si 0.99 43.00 29.55 68.60 2.03 45.02 16 24 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 25 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 27 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.07 2.33 7.38 -2.39 -0.02 2.31 16 30 H 0.44 7.06 8.80 -92.71 -0.82 6.24 16 31 H 0.14 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 0.89 7.86 -2.39 -0.02 0.87 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.07 0.79 8.12 -2.38 -0.02 0.77 16 36 H 0.08 1.78 6.51 -2.38 -0.02 1.76 16 37 H 0.11 1.30 7.86 -2.39 -0.02 1.28 16 38 H 0.28 14.68 8.32 -92.71 -0.77 13.91 16 Total: -1.00 -71.12 344.90 1.20 -69.92 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 0.29 Total: 10.03 kcal Atomic # 6 Polarization: -27.74 SS G_CDS: 6.14 Total: -21.61 kcal Atomic # 7 Polarization: -83.38 SS G_CDS: -3.32 Total: -86.70 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -1.73 Total: -26.52 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Atomic # 16 Polarization: 12.06 SS G_CDS: -2.21 Total: 9.85 kcal Total: -71.12 1.20 -69.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331264555.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.815 kcal (2) G-P(sol) polarization free energy of solvation -71.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds