Wall clock time and date at job start Tue Mar 31 2020 15:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39628 * 119.96051 * 118.40472 * 3 2 1 5 5 C 1.37990 * 120.04184 * 179.97438 * 4 3 2 6 6 F 1.35100 * 120.02049 * 180.02562 * 5 4 3 7 7 C 1.39965 * 119.95771 * 359.97438 * 5 4 3 8 8 C 1.47565 * 120.03593 * 180.02562 * 7 5 4 9 9 O 1.21589 * 120.00025 * 90.00560 * 8 7 5 10 10 N 1.34786 * 119.99891 * 270.00105 * 8 7 5 11 11 C 1.38997 * 119.99709 * 185.76147 * 10 8 7 12 12 C 1.38683 * 120.29064 * 24.81956 * 11 10 8 13 13 C 1.38200 * 120.03169 * 180.27374 * 12 11 10 14 14 C 1.38881 * 120.62099 * 359.69602 * 13 12 11 15 15 C 1.36455 * 120.58258 * 359.97438 * 14 13 12 16 16 C 1.40743 * 119.94881 * 0.02654 * 15 14 13 17 17 C 1.41042 * 120.30558 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00301 * 185.66123 * 17 16 15 19 19 C 1.39967 * 119.99949 * 5.66334 * 17 16 15 20 20 N 1.30842 * 120.00347 * 34.85404 * 19 17 16 21 21 Si 1.86807 * 120.00111 * 214.86007 * 19 17 16 22 22 H 1.48497 * 109.46825 * 264.99882 * 21 19 17 23 23 H 1.48502 * 109.46910 * 24.99648 * 21 19 17 24 24 H 1.48491 * 109.47196 * 144.99709 * 21 19 17 25 25 C 1.39961 * 119.92109 * 0.28093 * 7 5 4 26 26 F 1.35095 * 120.01806 * 179.71966 * 25 7 5 27 27 C 1.37993 * 119.95793 * 359.44237 * 25 7 5 28 28 H 1.07999 * 119.97828 * 359.97438 * 4 3 2 29 29 H 0.96994 * 119.99808 * 5.76784 * 10 8 7 30 30 H 1.08006 * 119.98373 * 359.97378 * 12 11 10 31 31 H 1.07998 * 119.68722 * 179.72105 * 13 12 11 32 32 H 1.07995 * 119.70740 * 180.02562 * 14 13 12 33 33 H 1.08002 * 120.02516 * 180.02562 * 15 14 13 34 34 H 0.97002 * 120.00900 * 179.97438 * 20 19 17 35 35 H 1.07999 * 119.97499 * 180.27898 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2650 0.5764 -1.0641 5 6 4.6449 0.5784 -1.0655 6 9 5.3189 1.1361 -2.0951 7 6 5.3458 0.0033 0.0008 8 6 6.8215 0.0050 0.0012 9 8 7.4282 0.9321 0.5020 10 7 7.4968 -1.0212 -0.5534 11 6 8.8815 -1.0797 -0.4480 12 6 9.5311 -0.4400 0.5969 13 6 10.9086 -0.4969 0.6933 14 6 11.6552 -1.1965 -0.2458 15 6 11.0415 -1.8407 -1.2804 16 6 9.6399 -1.7986 -1.4020 17 6 8.9979 -2.4614 -2.4686 18 1 7.9329 -2.3510 -2.6102 19 6 9.7409 -3.2621 -3.3437 20 7 10.7581 -3.9521 -2.8951 21 14 9.2804 -3.3458 -5.1522 22 1 8.4037 -4.5213 -5.3858 23 1 8.5592 -2.1060 -5.5372 24 1 10.5122 -3.4764 -5.9711 25 6 4.6455 -0.5781 1.0639 26 9 5.3200 -1.1388 2.0914 27 6 3.2655 -0.5732 1.0647 28 1 2.7238 1.0204 -1.8864 29 1 7.0164 -1.7188 -1.0260 30 1 8.9607 0.1070 1.3331 31 1 11.4091 0.0071 1.5069 32 1 12.7308 -1.2316 -0.1560 33 1 11.6308 -2.3824 -2.0054 34 1 11.2729 -4.5074 -3.5014 35 1 2.7248 -1.0178 1.8872 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335324407.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:07 Heat of formation + Delta-G solvation = -37.079519 kcal Electronic energy + Delta-G solvation = -26300.048748 eV Core-core repulsion = 22092.426861 eV Total energy + Delta-G solvation = -4207.621886 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.076 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.32055 -49.29060 -40.12592 -39.12131 -37.28379 -36.66091 -34.01159 -33.85740 -32.04790 -31.01669 -29.78458 -28.49511 -25.85753 -25.09722 -23.39639 -22.06397 -21.03031 -19.99065 -19.78528 -17.91140 -17.86245 -17.37795 -16.87703 -16.60913 -16.13297 -16.06447 -15.57678 -15.53032 -15.19146 -14.57253 -14.30745 -14.21638 -14.09622 -13.88648 -13.76503 -13.08176 -12.81254 -12.77263 -12.67767 -12.40118 -12.29667 -12.09960 -11.83750 -11.45749 -11.28999 -11.08610 -10.60212 -10.28319 -9.90783 -9.61676 -9.41266 -9.30303 -9.13101 -8.92756 -7.64972 -7.20000 -6.88359 -4.41800 -0.13273 0.45439 2.10533 2.17536 2.35769 2.71724 2.95177 2.96510 2.98572 3.10529 3.20467 3.24883 3.49539 3.54423 3.74249 3.93126 4.31547 4.34293 4.38684 4.71374 4.78862 5.25793 5.27560 5.41382 5.46383 5.60917 6.08136 6.33157 6.44528 6.57096 6.73991 6.91232 6.92052 7.09472 7.22111 7.46910 7.65839 7.84858 7.99248 8.09839 8.24236 8.44467 8.63308 8.67014 8.90202 9.81407 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.012920 B = 0.003933 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.634464 B = 7116.869825 C = 8422.462099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C 0.256 3.744 3 C 0.041 3.959 4 C -0.119 4.119 5 C 0.168 3.832 6 F -0.108 7.108 7 C -0.158 4.158 8 C 0.536 3.464 9 O -0.515 6.515 10 N -0.611 5.611 11 C -0.011 4.011 12 C -0.079 4.079 13 C -0.244 4.244 14 C -0.100 4.100 15 C -0.184 4.184 16 C 0.105 3.895 17 C -0.462 4.462 18 H 0.078 0.922 19 C 0.089 3.911 20 N -0.755 5.755 21 Si 0.898 3.102 22 H -0.268 1.268 23 H -0.256 1.256 24 H -0.272 1.272 25 C 0.167 3.833 26 F -0.110 7.110 27 C -0.119 4.119 28 H 0.159 0.841 29 H 0.405 0.595 30 H 0.114 0.886 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.128 0.872 34 H 0.286 0.714 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.037 2.702 1.623 12.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.069 5.069 2 C -0.060 4.060 3 C 0.038 3.962 4 C -0.141 4.141 5 C 0.147 3.853 6 F -0.086 7.086 7 C -0.164 4.164 8 C 0.320 3.680 9 O -0.392 6.392 10 N -0.252 5.252 11 C -0.105 4.105 12 C -0.099 4.099 13 C -0.264 4.264 14 C -0.119 4.119 15 C -0.204 4.204 16 C 0.101 3.899 17 C -0.489 4.489 18 H 0.096 0.904 19 C -0.135 4.135 20 N -0.378 5.378 21 Si 0.721 3.279 22 H -0.193 1.193 23 H -0.179 1.179 24 H -0.197 1.197 25 C 0.147 3.853 26 F -0.088 7.088 27 C -0.141 4.141 28 H 0.177 0.823 29 H 0.240 0.760 30 H 0.132 0.868 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.146 0.854 34 H 0.097 0.903 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -13.143 3.146 1.937 13.652 hybrid contribution 0.383 -0.448 -1.067 1.219 sum -12.760 2.698 0.870 13.071 Atomic orbital electron populations 1.81310 1.11619 1.07242 1.06728 1.25212 0.92048 0.94384 0.94359 1.15262 0.84782 1.00908 0.95267 1.21062 0.91794 1.01452 0.99764 1.16973 0.88914 0.94877 0.84515 1.91655 1.80018 1.81823 1.55145 1.20457 0.96566 1.03624 0.95729 1.17606 0.84983 0.83523 0.81898 1.90789 1.67756 1.34793 1.45863 1.42791 1.07081 1.23207 1.52095 1.17465 0.80110 1.12661 1.00216 1.20707 0.94319 0.98823 0.96019 1.20226 0.93412 1.09665 1.03084 1.20460 0.97475 0.97882 0.96081 1.21096 0.94028 1.04933 1.00298 1.17301 0.91951 0.91172 0.89474 1.19287 0.95989 1.24328 1.09296 0.90405 1.25960 0.93886 0.92182 1.01438 1.69917 1.14995 1.15352 1.37496 0.86452 0.79594 0.80018 0.81802 1.19302 1.17947 1.19658 1.16952 0.88895 0.94557 0.84897 1.91642 1.80014 1.81759 1.55350 1.21050 0.91766 1.01532 0.99730 0.82297 0.75961 0.86801 0.89271 0.89473 0.85407 0.90303 0.82307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -4.23 18.54 41.84 0.78 -3.45 16 2 C 0.26 2.17 15.31 -22.47 -0.34 1.83 16 3 C 0.04 0.31 5.73 -106.94 -0.61 -0.30 16 4 C -0.12 -0.95 9.71 -39.15 -0.38 -1.33 16 5 C 0.17 1.93 7.28 -39.03 -0.28 1.65 16 6 F -0.11 -1.48 16.82 2.25 0.04 -1.45 16 7 C -0.16 -2.15 5.65 -104.80 -0.59 -2.75 16 8 C 0.54 10.04 6.31 -12.45 -0.08 9.97 16 9 O -0.51 -11.39 14.27 5.29 0.08 -11.32 16 10 N -0.61 -12.23 5.12 -10.41 -0.05 -12.28 16 11 C -0.01 -0.27 6.46 -83.21 -0.54 -0.81 16 12 C -0.08 -1.89 8.70 -39.43 -0.34 -2.23 16 13 C -0.24 -5.69 10.04 -39.36 -0.39 -6.08 16 14 C -0.10 -2.35 9.97 -39.99 -0.40 -2.75 16 15 C -0.18 -4.62 8.88 -39.28 -0.35 -4.97 16 16 C 0.10 2.64 5.72 -106.65 -0.61 2.03 16 17 C -0.46 -11.04 8.63 -37.87 -0.33 -11.36 16 18 H 0.08 1.72 6.65 -52.48 -0.35 1.37 16 19 C 0.09 2.02 4.96 -17.33 -0.09 1.93 16 20 N -0.76 -17.67 10.94 55.55 0.61 -17.06 16 21 Si 0.90 16.89 29.67 -169.99 -5.04 11.84 16 22 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 23 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 24 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 25 C 0.17 1.90 7.28 -39.03 -0.28 1.61 16 26 F -0.11 -1.45 16.82 2.25 0.04 -1.41 16 27 C -0.12 -0.94 9.71 -39.15 -0.38 -1.32 16 28 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 29 H 0.40 7.21 7.17 -40.82 -0.29 6.91 16 30 H 0.11 2.71 5.79 -52.48 -0.30 2.40 16 31 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 32 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 33 H 0.13 3.25 5.56 -52.49 -0.29 2.96 16 34 H 0.29 5.99 8.30 -40.82 -0.34 5.65 16 35 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 329.52 15.07 4.97 4.97 Total: -1.00 -29.00 329.52 -6.66 -35.66 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -2.06 Total: 9.40 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: -6.00 Total: -14.90 kcal Atomic # 7 Polarization: -34.13 SS G_CDS: 1.33 Total: -32.80 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.08 Total: -11.32 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.08 Total: -2.86 kcal Atomic # 14 Polarization: 16.89 SS G_CDS: -5.04 Total: 11.84 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.00 -6.66 -35.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335324407.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.418 kcal (2) G-P(sol) polarization free energy of solvation -29.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds