Wall clock time and date at job start Tue Mar 31 2020 15:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39628 * 119.96051 * 118.40472 * 3 2 1 5 5 C 1.37990 * 120.04184 * 179.97438 * 4 3 2 6 6 F 1.35100 * 120.02049 * 180.02562 * 5 4 3 7 7 C 1.39965 * 119.95771 * 359.97438 * 5 4 3 8 8 C 1.47565 * 120.03593 * 180.02562 * 7 5 4 9 9 O 1.21589 * 120.00025 * 90.00560 * 8 7 5 10 10 N 1.34786 * 119.99891 * 270.00105 * 8 7 5 11 11 C 1.38997 * 119.99709 * 185.76147 * 10 8 7 12 12 C 1.38683 * 120.29064 * 24.81956 * 11 10 8 13 13 C 1.38200 * 120.03169 * 180.27374 * 12 11 10 14 14 C 1.38881 * 120.62099 * 359.69602 * 13 12 11 15 15 C 1.36455 * 120.58258 * 359.97438 * 14 13 12 16 16 C 1.40743 * 119.94881 * 0.02654 * 15 14 13 17 17 C 1.41042 * 120.30558 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00301 * 185.66123 * 17 16 15 19 19 C 1.39967 * 119.99949 * 5.66334 * 17 16 15 20 20 N 1.30842 * 120.00347 * 34.85404 * 19 17 16 21 21 Si 1.86807 * 120.00111 * 214.86007 * 19 17 16 22 22 H 1.48497 * 109.46825 * 264.99882 * 21 19 17 23 23 H 1.48502 * 109.46910 * 24.99648 * 21 19 17 24 24 H 1.48491 * 109.47196 * 144.99709 * 21 19 17 25 25 C 1.39961 * 119.92109 * 0.28093 * 7 5 4 26 26 F 1.35095 * 120.01806 * 179.71966 * 25 7 5 27 27 C 1.37993 * 119.95793 * 359.44237 * 25 7 5 28 28 H 1.07999 * 119.97828 * 359.97438 * 4 3 2 29 29 H 0.96994 * 119.99808 * 5.76784 * 10 8 7 30 30 H 1.08006 * 119.98373 * 359.97378 * 12 11 10 31 31 H 1.07998 * 119.68722 * 179.72105 * 13 12 11 32 32 H 1.07995 * 119.70740 * 180.02562 * 14 13 12 33 33 H 1.08002 * 120.02516 * 180.02562 * 15 14 13 34 34 H 0.97002 * 120.00900 * 179.97438 * 20 19 17 35 35 H 1.07999 * 119.97499 * 180.27898 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2650 0.5764 -1.0641 5 6 4.6449 0.5784 -1.0655 6 9 5.3189 1.1361 -2.0951 7 6 5.3458 0.0033 0.0008 8 6 6.8215 0.0050 0.0012 9 8 7.4282 0.9321 0.5020 10 7 7.4968 -1.0212 -0.5534 11 6 8.8815 -1.0797 -0.4480 12 6 9.5311 -0.4400 0.5969 13 6 10.9086 -0.4969 0.6933 14 6 11.6552 -1.1965 -0.2458 15 6 11.0415 -1.8407 -1.2804 16 6 9.6399 -1.7986 -1.4020 17 6 8.9979 -2.4614 -2.4686 18 1 7.9329 -2.3510 -2.6102 19 6 9.7409 -3.2621 -3.3437 20 7 10.7581 -3.9521 -2.8951 21 14 9.2804 -3.3458 -5.1522 22 1 8.4037 -4.5213 -5.3858 23 1 8.5592 -2.1060 -5.5372 24 1 10.5122 -3.4764 -5.9711 25 6 4.6455 -0.5781 1.0639 26 9 5.3200 -1.1388 2.0914 27 6 3.2655 -0.5732 1.0647 28 1 2.7238 1.0204 -1.8864 29 1 7.0164 -1.7188 -1.0260 30 1 8.9607 0.1070 1.3331 31 1 11.4091 0.0071 1.5069 32 1 12.7308 -1.2316 -0.1560 33 1 11.6308 -2.3824 -2.0054 34 1 11.2729 -4.5074 -3.5014 35 1 2.7248 -1.0178 1.8872 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335324407.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:06 Heat of formation + Delta-G solvation = -52.131591 kcal Electronic energy + Delta-G solvation = -26300.701454 eV Core-core repulsion = 22092.426861 eV Total energy + Delta-G solvation = -4208.274593 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.076 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -50.27681 -50.25576 -41.49984 -40.19737 -38.93568 -37.51640 -35.73657 -35.57308 -33.04952 -31.80654 -31.60539 -30.19369 -27.35480 -26.45029 -24.22271 -23.66873 -22.71897 -21.41931 -20.81940 -19.45659 -19.07409 -18.76813 -18.07536 -17.70156 -17.26835 -17.04276 -16.95551 -16.54605 -16.48762 -16.07245 -15.72951 -15.59397 -15.06433 -14.83184 -14.67972 -14.66527 -14.45857 -14.22610 -13.67424 -13.57537 -13.48273 -13.25684 -13.12285 -13.00564 -12.96699 -12.64885 -12.15581 -11.96948 -11.67432 -11.25406 -10.87312 -10.68693 -10.35548 -10.08391 -9.51684 -8.97216 -8.66431 -6.24835 -0.97033 -0.31783 0.72500 1.02581 1.37495 1.39759 1.40185 1.49875 1.58335 1.63327 2.06838 2.16215 2.21704 2.40838 2.61623 2.69331 3.11877 3.41591 3.52234 3.65373 3.74017 3.98081 4.39126 4.42632 4.54571 4.60371 4.62874 4.77299 4.79052 4.98354 5.18904 5.27041 5.28700 5.42412 5.67108 5.83890 6.07472 6.18316 6.23596 6.24224 6.53976 6.62147 6.86091 6.95565 7.18352 8.12092 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.012920 B = 0.003933 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.634464 B = 7116.869825 C = 8422.462099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C 0.284 3.716 3 C 0.060 3.940 4 C -0.088 4.088 5 C 0.156 3.844 6 F -0.126 7.126 7 C -0.178 4.178 8 C 0.539 3.461 9 O -0.555 6.555 10 N -0.614 5.614 11 C -0.019 4.019 12 C -0.094 4.094 13 C -0.255 4.255 14 C -0.104 4.104 15 C -0.212 4.212 16 C 0.078 3.922 17 C -0.483 4.483 18 H 0.088 0.912 19 C 0.052 3.948 20 N -0.782 5.782 21 Si 0.972 3.028 22 H -0.254 1.254 23 H -0.260 1.260 24 H -0.267 1.267 25 C 0.157 3.843 26 F -0.125 7.125 27 C -0.088 4.088 28 H 0.192 0.808 29 H 0.413 0.587 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.120 0.880 34 H 0.296 0.704 35 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.611 2.449 0.674 14.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.100 5.100 2 C -0.032 4.032 3 C 0.056 3.944 4 C -0.109 4.109 5 C 0.135 3.865 6 F -0.104 7.104 7 C -0.184 4.184 8 C 0.325 3.675 9 O -0.435 6.435 10 N -0.255 5.255 11 C -0.113 4.113 12 C -0.114 4.114 13 C -0.275 4.275 14 C -0.123 4.123 15 C -0.232 4.232 16 C 0.074 3.926 17 C -0.509 4.509 18 H 0.106 0.894 19 C -0.169 4.169 20 N -0.404 5.404 21 Si 0.792 3.208 22 H -0.178 1.178 23 H -0.184 1.184 24 H -0.191 1.191 25 C 0.137 3.863 26 F -0.103 7.103 27 C -0.109 4.109 28 H 0.209 0.791 29 H 0.250 0.750 30 H 0.129 0.871 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.138 0.862 34 H 0.108 0.892 35 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -15.739 2.876 0.998 16.030 hybrid contribution 1.114 -0.379 -0.728 1.383 sum -14.625 2.497 0.269 14.839 Atomic orbital electron populations 1.81375 1.12601 1.08253 1.07742 1.24936 0.91547 0.93348 0.93337 1.15146 0.84293 1.00080 0.94853 1.21266 0.89985 0.99422 1.00264 1.17076 0.89951 0.95633 0.83793 1.91614 1.80648 1.82287 1.55838 1.20146 0.93237 1.06818 0.98196 1.18293 0.87198 0.82119 0.79871 1.90746 1.69590 1.36043 1.47111 1.42809 1.05918 1.24109 1.52650 1.17616 0.81940 1.12056 0.99713 1.20859 0.94898 0.99315 0.96362 1.20494 0.93399 1.09866 1.03742 1.20690 0.98717 0.97327 0.95550 1.21179 0.94428 1.06381 1.01199 1.17647 0.92408 0.92144 0.90386 1.19604 0.96824 1.24747 1.09757 0.89376 1.26804 0.93579 0.91266 1.05269 1.69921 1.15581 1.15554 1.39352 0.85344 0.79452 0.80065 0.75966 1.17811 1.18374 1.19117 1.17046 0.89909 0.95257 0.84104 1.91607 1.80610 1.82164 1.55959 1.21266 0.89972 0.99453 1.00204 0.79102 0.75010 0.87138 0.87261 0.87222 0.86210 0.89240 0.79040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -7.73 18.54 19.00 0.35 -7.38 16 2 C 0.28 3.66 15.31 88.33 1.35 5.02 16 3 C 0.06 0.67 5.73 -21.36 -0.12 0.54 16 4 C -0.09 -1.09 9.71 22.55 0.22 -0.87 16 5 C 0.16 3.35 7.28 22.63 0.16 3.52 16 6 F -0.13 -3.37 16.82 44.97 0.76 -2.61 16 7 C -0.18 -4.78 5.65 -19.98 -0.11 -4.89 16 8 C 0.54 20.80 6.31 86.70 0.55 21.35 16 9 O -0.56 -25.60 14.27 -3.99 -0.06 -25.66 16 10 N -0.61 -25.38 5.12 -305.10 -1.56 -26.95 16 11 C -0.02 -0.96 6.46 38.92 0.25 -0.70 16 12 C -0.09 -4.69 8.70 22.37 0.19 -4.50 16 13 C -0.26 -12.18 10.04 22.41 0.22 -11.96 16 14 C -0.10 -5.01 9.97 22.01 0.22 -4.79 16 15 C -0.21 -11.02 8.88 22.47 0.20 -10.82 16 16 C 0.08 4.06 5.72 -21.18 -0.12 3.94 16 17 C -0.48 -23.46 8.63 23.38 0.20 -23.26 16 18 H 0.09 3.93 6.65 -2.91 -0.02 3.91 16 19 C 0.05 2.38 4.96 85.26 0.42 2.80 16 20 N -0.78 -36.85 10.94 21.83 0.24 -36.61 16 21 Si 0.97 34.05 29.67 68.60 2.04 36.09 16 22 H -0.25 -8.30 7.11 99.48 0.71 -7.59 16 23 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 24 H -0.27 -9.06 7.11 99.48 0.71 -8.36 16 25 C 0.16 3.33 7.28 22.63 0.16 3.49 16 26 F -0.13 -3.26 16.82 44.97 0.76 -2.50 16 27 C -0.09 -1.07 9.71 22.55 0.22 -0.85 16 28 H 0.19 1.21 8.06 -2.91 -0.02 1.19 16 29 H 0.41 15.14 7.17 -92.71 -0.67 14.48 16 30 H 0.11 5.50 5.79 -2.91 -0.02 5.48 16 31 H 0.11 4.63 8.06 -2.91 -0.02 4.60 16 32 H 0.11 4.61 8.06 -2.91 -0.02 4.59 16 33 H 0.12 6.31 5.56 -2.91 -0.02 6.29 16 34 H 0.30 12.38 8.30 -92.71 -0.77 11.61 16 35 H 0.19 1.15 8.06 -2.91 -0.02 1.13 16 Total: -1.00 -65.88 329.52 7.09 -58.79 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: 0.54 Total: 28.82 kcal Atomic # 6 Polarization: -26.02 SS G_CDS: 4.03 Total: -22.00 kcal Atomic # 7 Polarization: -69.97 SS G_CDS: -0.97 Total: -70.94 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.06 Total: -25.66 kcal Atomic # 9 Polarization: -6.62 SS G_CDS: 1.51 Total: -5.11 kcal Atomic # 14 Polarization: 34.05 SS G_CDS: 2.04 Total: 36.09 kcal Total: -65.88 7.09 -58.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335324407.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.659 kcal (2) G-P(sol) polarization free energy of solvation -65.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds