Wall clock time and date at job start Tue Mar 31 2020 15:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00238 * 2 1 4 4 H 1.48495 * 109.47120 * 239.99917 * 3 2 1 5 5 H 1.48505 * 109.46943 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47178 * 119.99794 * 3 2 1 7 7 C 1.37883 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99712 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99597 * 0.02562 * 7 2 1 10 10 C 1.53046 * 109.45734 * 179.97438 * 9 7 2 11 11 C 1.53189 * 109.31303 * 178.62787 * 10 9 7 12 12 N 1.46936 * 108.77468 * 54.63751 * 11 10 9 13 13 C 1.34772 * 120.63036 * 126.36636 * 12 11 10 14 14 O 1.21582 * 120.00028 * 185.22534 * 13 12 11 15 15 N 1.34779 * 120.00236 * 5.22857 * 13 12 11 16 16 C 1.46494 * 120.00065 * 175.01806 * 15 13 12 17 17 C 1.50698 * 109.46939 * 180.02562 * 16 15 13 18 18 C 1.33346 * 125.19802 * 89.99920 * 17 16 15 19 19 C 1.38469 * 114.93683 * 180.02562 * 18 17 16 20 20 C 1.33492 * 114.88322 * 359.97438 * 19 18 17 21 21 Cl 1.73602 * 125.21106 * 179.97438 * 20 19 18 22 22 S 1.75884 * 125.18480 * 269.99512 * 17 16 15 23 23 C 1.46926 * 118.73373 * 306.64446 * 12 11 10 24 24 C 1.52751 * 109.01264 * 53.31094 * 23 12 11 25 25 H 0.97004 * 120.00057 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46385 * 299.96898 * 9 7 2 27 27 H 1.08997 * 109.49696 * 58.67661 * 10 9 7 28 28 H 1.08999 * 109.52321 * 298.59879 * 10 9 7 29 29 H 1.08996 * 109.58964 * 294.85098 * 11 10 9 30 30 H 1.08997 * 109.70044 * 174.49150 * 11 10 9 31 31 H 0.96998 * 119.99528 * 355.01061 * 15 13 12 32 32 H 1.08997 * 109.47423 * 59.99664 * 16 15 13 33 33 H 1.09003 * 109.46854 * 299.99521 * 16 15 13 34 34 H 1.08006 * 122.52873 * 0.02562 * 18 17 16 35 35 H 1.08001 * 122.55685 * 179.72902 * 19 18 17 36 36 H 1.09010 * 109.58014 * 173.14673 * 23 12 11 37 37 H 1.09006 * 109.58619 * 293.56257 * 23 12 11 38 38 H 1.09004 * 109.56681 * 185.55153 * 24 23 12 39 39 H 1.08995 * 109.36221 * 65.49613 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2457 -3.6623 0.0005 11 6 1.4766 -4.9866 0.0352 12 7 0.5224 -5.0087 -1.0820 13 6 0.5122 -6.0344 -1.9562 14 8 -0.2156 -5.9965 -2.9293 15 7 1.3089 -7.1021 -1.7518 16 6 1.2195 -8.2635 -2.6401 17 6 2.2083 -9.3113 -2.1980 18 6 1.9565 -10.2848 -1.3222 19 6 3.0218 -11.1325 -1.0693 20 6 4.1392 -10.8463 -1.7413 21 17 5.6294 -11.7295 -1.6280 22 16 3.8707 -9.4367 -2.7586 23 6 -0.4164 -3.8883 -1.2313 24 6 0.3702 -2.5790 -1.2485 25 1 -0.4850 0.8401 -0.0004 26 1 0.6244 -2.5567 0.8906 27 1 2.8881 -3.5915 0.8783 28 1 2.8562 -3.6195 -0.9015 29 1 0.9369 -5.0713 0.9783 30 1 2.1735 -5.8189 -0.0631 31 1 1.9416 -7.1014 -1.0165 32 1 1.4457 -7.9580 -3.6616 33 1 0.2112 -8.6756 -2.5989 34 1 0.9943 -10.4032 -0.8462 35 1 2.9551 -11.9595 -0.3779 36 1 -0.9666 -3.9949 -2.1663 37 1 -1.1136 -3.8817 -0.3934 38 1 -0.3223 -1.7373 -1.2598 39 1 0.9979 -2.5462 -2.1390 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336593229.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:16 Heat of formation + Delta-G solvation = -1.382246 kcal Electronic energy + Delta-G solvation = -22798.504372 eV Core-core repulsion = 19279.671067 eV Total energy + Delta-G solvation = -3518.833305 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.04089 -38.52601 -37.18529 -36.84936 -34.74405 -33.52748 -31.26146 -30.65707 -29.68257 -26.62427 -25.69982 -23.54606 -22.95992 -22.12371 -20.26947 -19.92672 -19.08844 -18.16865 -17.30850 -16.36565 -16.23159 -15.91111 -15.25475 -14.62463 -14.42818 -14.20080 -13.84760 -13.71020 -13.60835 -13.31413 -12.97551 -12.83710 -12.56771 -12.44446 -12.08802 -11.96691 -11.78589 -11.45689 -11.12300 -11.07474 -10.92090 -10.68564 -10.44385 -10.06314 -9.88004 -9.56187 -9.20491 -9.08912 -9.03193 -8.93651 -8.90675 -8.36502 -7.92224 -6.01727 -4.08463 0.31083 0.68597 1.41276 1.82086 2.12410 3.06167 3.30142 3.35382 3.37652 3.50210 4.19673 4.26605 4.41306 4.81023 4.92873 5.24890 5.27963 5.34345 5.42231 5.52914 5.66285 5.74682 5.82754 5.92218 6.03529 6.25073 6.41814 6.45228 6.53368 6.61122 6.79014 6.97083 7.11430 7.23380 7.46866 7.70768 7.93243 8.06026 8.25181 8.40415 8.88123 8.94556 9.56524 11.03643 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.020495 B = 0.002439 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.866007 B =11479.113524 C =12344.394426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.050 3.950 10 C -0.124 4.124 11 C 0.113 3.887 12 N -0.616 5.616 13 C 0.706 3.294 14 O -0.599 6.599 15 N -0.751 5.751 16 C 0.212 3.788 17 C -0.193 4.193 18 C -0.110 4.110 19 C -0.121 4.121 20 C -0.149 4.149 21 Cl -0.015 7.015 22 S 0.173 5.827 23 C 0.127 3.873 24 C -0.124 4.124 25 H 0.261 0.739 26 H 0.027 0.973 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.397 0.603 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.077 0.923 37 H 0.057 0.943 38 H 0.104 0.896 39 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.984 -23.112 -1.651 23.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.552 4.552 8 H 0.072 0.928 9 C 0.032 3.968 10 C -0.162 4.162 11 C -0.010 4.010 12 N -0.352 5.352 13 C 0.408 3.592 14 O -0.478 6.478 15 N -0.411 5.411 16 C 0.086 3.914 17 C -0.311 4.311 18 C -0.141 4.141 19 C -0.153 4.153 20 C -0.294 4.294 21 Cl 0.014 6.986 22 S 0.436 5.564 23 C 0.005 3.995 24 C -0.163 4.163 25 H 0.071 0.929 26 H 0.045 0.955 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.234 0.766 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.169 0.831 35 H 0.168 0.832 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.122 0.878 39 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 6.314 -22.200 -3.363 23.324 hybrid contribution 0.248 -0.046 1.440 1.462 sum 6.562 -22.246 -1.922 23.273 Atomic orbital electron populations 1.69832 1.05843 1.26605 1.50608 1.24962 0.94864 0.99047 0.95069 0.86681 0.79630 0.83252 0.78557 1.20355 1.21299 1.20338 1.21143 0.92822 0.90614 1.50658 0.92821 1.18616 0.92553 0.91490 0.94177 1.22013 0.98960 0.94295 1.00943 1.21720 0.91146 0.98951 0.89191 1.47458 1.38157 1.21279 1.28332 1.15810 0.80670 0.79856 0.82863 1.90875 1.45827 1.81035 1.30101 1.45337 1.43815 1.16655 1.35308 1.19415 0.96067 0.82110 0.93800 1.24688 0.98401 1.03134 1.04872 1.20077 1.00559 0.94645 0.98844 1.20209 0.91059 1.02239 1.01802 1.25393 0.93334 1.02649 1.07982 1.98379 1.29683 1.73353 1.97190 1.84691 1.06369 1.23158 1.42133 1.21699 0.90919 0.85610 1.01300 1.21954 1.00148 0.94958 0.99238 0.92881 0.95472 0.92133 0.92889 0.91847 0.92361 0.76604 0.90392 0.89501 0.83068 0.83214 0.90495 0.92504 0.87786 0.94359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.65 11.30 55.43 0.63 -24.02 16 2 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 3 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.51 -13.61 8.56 -34.44 -0.29 -13.90 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 9 C 0.05 1.18 2.07 -91.73 -0.19 0.99 16 10 C -0.12 -2.36 5.30 -26.61 -0.14 -2.50 16 11 C 0.11 1.78 6.39 -3.71 -0.02 1.75 16 12 N -0.62 -10.98 2.98 -178.76 -0.53 -11.51 16 13 C 0.71 12.32 8.30 -86.92 -0.72 11.59 16 14 O -0.60 -12.44 15.77 5.29 0.08 -12.36 16 15 N -0.75 -9.75 5.46 -66.42 -0.36 -10.12 16 16 C 0.21 2.30 6.17 -5.20 -0.03 2.27 16 17 C -0.19 -1.72 5.88 -36.02 -0.21 -1.93 16 18 C -0.11 -0.85 10.05 -41.21 -0.41 -1.26 16 19 C -0.12 -0.91 10.13 -41.16 -0.42 -1.33 16 20 C -0.15 -1.27 7.10 29.07 0.21 -1.07 16 21 Cl -0.01 -0.12 29.29 -51.86 -1.52 -1.64 16 22 S 0.17 1.54 23.33 -107.50 -2.51 -0.97 16 23 C 0.13 2.52 6.41 -3.94 -0.03 2.50 16 24 C -0.12 -2.86 5.14 -26.84 -0.14 -3.00 16 25 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 26 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.73 5.64 -51.93 -0.29 0.44 16 31 H 0.40 4.51 5.95 -40.82 -0.24 4.27 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.15 0.94 8.06 -52.48 -0.42 0.51 16 35 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.08 1.57 7.00 -51.92 -0.36 1.21 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.10 2.67 6.03 -51.93 -0.31 2.36 16 39 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 347.68 15.07 5.24 5.24 Total: -1.00 -29.73 347.68 -11.47 -41.20 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -4.98 Total: 2.62 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -2.50 Total: -4.32 kcal Atomic # 7 Polarization: -45.38 SS G_CDS: -0.27 Total: -45.65 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.08 Total: -12.36 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -2.51 Total: -0.97 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -1.52 Total: -1.64 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.73 -11.47 -41.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336593229.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.813 kcal (2) G-P(sol) polarization free energy of solvation -29.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds