Wall clock time and date at job start Tue Mar 31 2020 15:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00238 * 2 1 4 4 H 1.48495 * 109.47120 * 239.99917 * 3 2 1 5 5 H 1.48505 * 109.46943 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47178 * 119.99794 * 3 2 1 7 7 C 1.37883 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99712 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99597 * 0.02562 * 7 2 1 10 10 C 1.53046 * 109.45734 * 179.97438 * 9 7 2 11 11 C 1.53189 * 109.31303 * 178.62787 * 10 9 7 12 12 N 1.46936 * 108.77468 * 54.63751 * 11 10 9 13 13 C 1.34772 * 120.63036 * 126.36636 * 12 11 10 14 14 O 1.21582 * 120.00028 * 185.22534 * 13 12 11 15 15 N 1.34779 * 120.00236 * 5.22857 * 13 12 11 16 16 C 1.46494 * 120.00065 * 175.01806 * 15 13 12 17 17 C 1.50698 * 109.46939 * 180.02562 * 16 15 13 18 18 C 1.33346 * 125.19802 * 89.99920 * 17 16 15 19 19 C 1.38469 * 114.93683 * 180.02562 * 18 17 16 20 20 C 1.33492 * 114.88322 * 359.97438 * 19 18 17 21 21 Cl 1.73602 * 125.21106 * 179.97438 * 20 19 18 22 22 S 1.75884 * 125.18480 * 269.99512 * 17 16 15 23 23 C 1.46926 * 118.73373 * 306.64446 * 12 11 10 24 24 C 1.52751 * 109.01264 * 53.31094 * 23 12 11 25 25 H 0.97004 * 120.00057 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46385 * 299.96898 * 9 7 2 27 27 H 1.08997 * 109.49696 * 58.67661 * 10 9 7 28 28 H 1.08999 * 109.52321 * 298.59879 * 10 9 7 29 29 H 1.08996 * 109.58964 * 294.85098 * 11 10 9 30 30 H 1.08997 * 109.70044 * 174.49150 * 11 10 9 31 31 H 0.96998 * 119.99528 * 355.01061 * 15 13 12 32 32 H 1.08997 * 109.47423 * 59.99664 * 16 15 13 33 33 H 1.09003 * 109.46854 * 299.99521 * 16 15 13 34 34 H 1.08006 * 122.52873 * 0.02562 * 18 17 16 35 35 H 1.08001 * 122.55685 * 179.72902 * 19 18 17 36 36 H 1.09010 * 109.58014 * 173.14673 * 23 12 11 37 37 H 1.09006 * 109.58619 * 293.56257 * 23 12 11 38 38 H 1.09004 * 109.56681 * 185.55153 * 24 23 12 39 39 H 1.08995 * 109.36221 * 65.49613 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2457 -3.6623 0.0005 11 6 1.4766 -4.9866 0.0352 12 7 0.5224 -5.0087 -1.0820 13 6 0.5122 -6.0344 -1.9562 14 8 -0.2156 -5.9965 -2.9293 15 7 1.3089 -7.1021 -1.7518 16 6 1.2195 -8.2635 -2.6401 17 6 2.2083 -9.3113 -2.1980 18 6 1.9565 -10.2848 -1.3222 19 6 3.0218 -11.1325 -1.0693 20 6 4.1392 -10.8463 -1.7413 21 17 5.6294 -11.7295 -1.6280 22 16 3.8707 -9.4367 -2.7586 23 6 -0.4164 -3.8883 -1.2313 24 6 0.3702 -2.5790 -1.2485 25 1 -0.4850 0.8401 -0.0004 26 1 0.6244 -2.5567 0.8906 27 1 2.8881 -3.5915 0.8783 28 1 2.8562 -3.6195 -0.9015 29 1 0.9369 -5.0713 0.9783 30 1 2.1735 -5.8189 -0.0631 31 1 1.9416 -7.1014 -1.0165 32 1 1.4457 -7.9580 -3.6616 33 1 0.2112 -8.6756 -2.5989 34 1 0.9943 -10.4032 -0.8462 35 1 2.9551 -11.9595 -0.3779 36 1 -0.9666 -3.9949 -2.1663 37 1 -1.1136 -3.8817 -0.3934 38 1 -0.3223 -1.7373 -1.2598 39 1 0.9979 -2.5462 -2.1390 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336593229.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:15 Heat of formation + Delta-G solvation = -17.580445 kcal Electronic energy + Delta-G solvation = -22799.206779 eV Core-core repulsion = 19279.671067 eV Total energy + Delta-G solvation = -3519.535711 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.39907 -39.25202 -38.51301 -37.67631 -35.88394 -35.31182 -32.96029 -32.02002 -30.86465 -28.09905 -26.86559 -24.77137 -24.21039 -23.62816 -21.77524 -20.71150 -20.33609 -19.40947 -18.42877 -18.16974 -17.30232 -16.89590 -16.54454 -16.41389 -15.62130 -15.28688 -14.95401 -14.88594 -14.63387 -14.55366 -14.38172 -14.13260 -13.85107 -13.72344 -13.38000 -13.09327 -12.96281 -12.78316 -12.57188 -12.48527 -12.15461 -12.11901 -11.91757 -11.69896 -11.42501 -11.36373 -10.93881 -10.78142 -10.39088 -10.26410 -9.70273 -9.59347 -9.38967 -8.06177 -6.19840 -0.34461 0.04222 0.77753 1.18905 1.42801 1.43906 1.44991 1.50899 1.87262 2.13366 2.44846 2.98791 3.20405 3.51251 4.08360 4.14022 4.26519 4.30225 4.34433 4.51337 4.56500 4.61319 4.65453 4.74895 4.90713 4.91818 4.99900 5.05393 5.20893 5.24242 5.30994 5.39782 5.48468 5.50761 5.66674 5.99499 6.04904 6.14291 6.40286 6.91441 6.97311 7.48065 7.53674 8.96991 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.020495 B = 0.002439 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.866007 B =11479.113524 C =12344.394426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.014 3.986 3 Si 0.949 3.051 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.533 4.533 8 H 0.051 0.949 9 C 0.046 3.954 10 C -0.117 4.117 11 C 0.119 3.881 12 N -0.621 5.621 13 C 0.705 3.295 14 O -0.636 6.636 15 N -0.733 5.733 16 C 0.214 3.786 17 C -0.201 4.201 18 C -0.096 4.096 19 C -0.117 4.117 20 C -0.155 4.155 21 Cl -0.013 7.013 22 S 0.154 5.846 23 C 0.139 3.861 24 C -0.113 4.113 25 H 0.260 0.740 26 H 0.006 0.994 27 H 0.073 0.927 28 H 0.043 0.957 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.407 0.593 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.171 0.829 35 H 0.171 0.829 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.986 -25.032 -0.645 25.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.185 4.185 3 Si 0.775 3.225 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.195 1.195 7 C -0.571 4.571 8 H 0.070 0.930 9 C 0.028 3.972 10 C -0.155 4.155 11 C -0.004 4.004 12 N -0.356 5.356 13 C 0.406 3.594 14 O -0.518 6.518 15 N -0.392 5.392 16 C 0.089 3.911 17 C -0.319 4.319 18 C -0.128 4.128 19 C -0.149 4.149 20 C -0.300 4.300 21 Cl 0.015 6.985 22 S 0.417 5.583 23 C 0.016 3.984 24 C -0.152 4.152 25 H 0.069 0.931 26 H 0.024 0.976 27 H 0.092 0.908 28 H 0.062 0.938 29 H 0.096 0.904 30 H 0.116 0.884 31 H 0.246 0.754 32 H 0.086 0.914 33 H 0.111 0.889 34 H 0.189 0.811 35 H 0.188 0.812 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 7.363 -24.157 -2.338 25.363 hybrid contribution -0.034 0.493 1.127 1.230 sum 7.330 -23.664 -1.211 24.803 Atomic orbital electron populations 1.69965 1.06994 1.27123 1.51337 1.25695 0.95651 1.02174 0.95002 0.85758 0.78481 0.79599 0.78673 1.20188 1.21163 1.19499 1.21561 0.93021 0.92226 1.50315 0.93027 1.18594 0.93099 0.92447 0.93093 1.21870 0.98167 0.94352 1.01094 1.21797 0.91206 0.98314 0.89062 1.47395 1.38244 1.20873 1.29134 1.15931 0.80837 0.80451 0.82144 1.90851 1.47524 1.81841 1.31577 1.45219 1.42562 1.15900 1.35559 1.19434 0.97070 0.81685 0.92927 1.24427 0.97945 1.03431 1.06086 1.20318 1.01286 0.93523 0.97639 1.20467 0.90413 1.02494 1.01552 1.25511 0.93814 1.02565 1.08074 1.98382 1.29702 1.73218 1.97165 1.84775 1.06756 1.23950 1.42805 1.21340 0.90899 0.84995 1.01141 1.21715 0.99395 0.95798 0.98272 0.93053 0.97614 0.90831 0.93792 0.90412 0.88405 0.75374 0.91407 0.88903 0.81127 0.81151 0.91362 0.91893 0.90857 0.96259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.79 11.30 21.45 0.24 -51.54 16 2 C 0.01 0.73 5.30 84.66 0.45 1.18 16 3 Si 0.95 43.11 29.54 68.60 2.03 45.14 16 4 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.53 -28.50 8.56 25.60 0.22 -28.28 16 8 H 0.05 2.71 7.74 -2.91 -0.02 2.68 16 9 C 0.05 2.19 2.07 -11.51 -0.02 2.17 16 10 C -0.12 -4.29 5.30 30.67 0.16 -4.12 16 11 C 0.12 3.42 6.39 86.36 0.55 3.97 16 12 N -0.62 -21.33 2.98 -837.74 -2.50 -23.83 16 13 C 0.70 23.62 8.30 179.05 1.49 25.10 16 14 O -0.64 -26.17 15.77 -3.97 -0.06 -26.24 16 15 N -0.73 -17.35 5.46 -482.32 -2.63 -19.98 16 16 C 0.21 4.25 6.17 85.63 0.53 4.77 16 17 C -0.20 -3.11 5.88 24.58 0.14 -2.96 16 18 C -0.10 -1.16 10.05 21.22 0.21 -0.95 16 19 C -0.12 -1.40 10.13 21.25 0.22 -1.19 16 20 C -0.16 -2.30 7.10 66.74 0.47 -1.82 16 21 Cl -0.01 -0.19 29.29 -2.72 -0.08 -0.27 16 22 S 0.15 2.48 23.33 -56.49 -1.32 1.17 16 23 C 0.14 5.60 6.41 86.22 0.55 6.15 16 24 C -0.11 -5.34 5.14 30.53 0.16 -5.19 16 25 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 26 H 0.01 0.29 8.14 -2.39 -0.02 0.28 16 27 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 28 H 0.04 1.68 8.14 -2.39 -0.02 1.67 16 29 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.10 2.07 5.64 -2.39 -0.01 2.05 16 31 H 0.41 7.88 5.95 -92.71 -0.55 7.33 16 32 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.17 1.42 8.06 -2.91 -0.02 1.39 16 35 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 36 H 0.07 2.85 7.00 -2.38 -0.02 2.84 16 37 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 38 H 0.07 3.92 6.03 -2.39 -0.01 3.91 16 39 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -65.06 347.68 1.34 -63.72 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 0.53 Total: 13.01 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: 5.13 Total: -1.17 kcal Atomic # 7 Polarization: -90.47 SS G_CDS: -4.89 Total: -95.35 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.06 Total: -26.24 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -1.32 Total: 1.17 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -0.08 Total: -0.27 kcal Total: -65.06 1.34 -63.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336593229.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.137 kcal (2) G-P(sol) polarization free energy of solvation -65.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds