Wall clock time and date at job start Tue Mar 31 2020 14:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31591 * 122.22989 * 2 1 4 4 C 1.29943 * 117.14102 * 179.97438 * 3 2 1 5 5 N 1.38891 * 125.36812 * 180.02562 * 4 3 2 6 6 C 1.34773 * 120.00262 * 179.97438 * 5 4 3 7 7 O 1.21293 * 120.00085 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00046 * 179.72573 * 6 5 4 9 9 O 1.42905 * 109.46835 * 180.27797 * 8 6 5 10 10 C 1.42903 * 113.99598 * 179.97438 * 9 8 6 11 11 C 1.52996 * 109.46976 * 180.02562 * 10 9 8 12 12 C 1.53001 * 117.50066 * 243.62710 * 11 10 9 13 13 C 1.52999 * 60.00048 * 252.51074 * 12 11 10 14 14 S 1.76142 * 109.26868 * 0.26500 * 4 3 2 15 15 C 1.34655 * 122.23450 * 179.97438 * 2 1 3 16 16 S 1.76206 * 125.92776 * 0.02562 * 15 2 1 17 17 C 1.76202 * 99.99921 * 179.97438 * 16 15 2 18 18 H 1.08001 * 119.99716 * 359.97438 * 17 16 15 19 19 C 1.38428 * 119.99686 * 179.97438 * 17 16 15 20 20 N 1.31810 * 120.00216 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99604 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47002 * 90.00311 * 21 19 17 23 23 H 1.48498 * 109.47009 * 210.00236 * 21 19 17 24 24 H 1.48501 * 109.47277 * 330.00447 * 21 19 17 25 25 H 1.09002 * 109.46556 * 90.02369 * 1 2 3 26 26 H 1.09001 * 109.46443 * 210.02182 * 1 2 3 27 27 H 1.08998 * 109.46853 * 330.02378 * 1 2 3 28 28 H 0.97000 * 120.00214 * 0.02562 * 5 4 3 29 29 H 1.09003 * 109.47174 * 300.27142 * 8 6 5 30 30 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 31 31 H 1.08997 * 109.47344 * 300.00160 * 10 9 8 32 32 H 1.09003 * 109.46747 * 60.00592 * 10 9 8 33 33 H 1.09004 * 115.55124 * 29.32873 * 11 10 9 34 34 H 1.09004 * 117.49964 * 359.97438 * 12 11 10 35 35 H 1.08993 * 117.50384 * 145.01954 * 12 11 10 36 36 H 1.09008 * 117.49737 * 252.50997 * 13 12 11 37 37 H 1.08998 * 117.50195 * 107.48732 * 13 12 11 38 38 H 0.96994 * 119.99761 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1132 0.0000 4 6 3.5031 0.9979 0.0005 5 7 4.4044 2.0547 0.0011 6 6 5.7297 1.8102 0.0021 7 8 6.1355 0.6671 0.0021 8 6 6.7075 2.9568 -0.0035 9 8 8.0418 2.4450 -0.0077 10 6 9.0520 3.4558 -0.0138 11 6 10.4327 2.7968 -0.0185 12 6 11.3352 3.0387 1.1931 13 6 11.6521 3.7124 -0.1435 14 16 3.9346 -0.7098 -0.0066 15 6 2.2253 -1.1390 0.0005 16 16 1.5698 -2.7746 0.0006 17 6 3.0668 -3.7041 0.0006 18 1 4.0189 -3.1943 0.0001 19 6 3.0223 -5.0877 0.0012 20 7 1.8602 -5.7098 0.0013 21 14 4.6093 -6.0730 0.0004 22 1 5.0308 -6.3336 1.4003 23 1 4.3897 -7.3645 -0.6990 24 1 5.6690 -5.3043 -0.7006 25 1 -0.3632 -0.0004 -1.0277 26 1 -0.3632 -0.8898 0.5142 27 1 -0.3633 0.8902 0.5135 28 1 4.0799 2.9688 0.0015 29 1 6.5490 3.5652 -0.8939 30 1 6.5558 3.5682 0.8861 31 1 8.9418 4.0742 -0.9046 32 1 8.9489 4.0777 0.8754 33 1 10.4857 1.8197 -0.4988 34 1 10.9454 3.6677 1.9934 35 1 11.9819 2.2207 1.5102 36 1 12.5075 3.3376 -0.7058 37 1 11.4706 4.7843 -0.2224 38 1 1.8292 -6.6792 0.0013 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337575626.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:49 Heat of formation + Delta-G solvation = -17.112426 kcal Electronic energy + Delta-G solvation = -21960.560461 eV Core-core repulsion = 18443.088750 eV Total energy + Delta-G solvation = -3517.471710 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.20757 -38.77284 -38.31627 -36.70409 -34.74065 -32.80298 -30.79522 -29.18268 -27.11572 -26.62220 -25.74506 -23.37615 -22.74680 -21.30103 -20.97905 -19.71029 -18.14445 -17.84708 -17.15204 -16.70155 -16.48881 -15.94602 -15.56353 -15.15522 -15.08272 -14.73932 -14.32436 -13.96544 -13.92146 -13.17909 -12.89576 -12.77726 -12.66444 -12.04717 -11.90728 -11.87528 -11.48410 -11.36781 -11.24204 -11.05700 -10.85992 -10.73749 -10.66417 -10.57519 -10.24214 -9.91824 -9.82152 -9.51800 -9.06408 -8.73903 -8.64153 -7.79202 -6.58252 -6.49058 -4.26056 1.39127 1.87643 2.40481 2.42969 2.61460 3.09936 3.12465 3.19280 3.31841 3.38763 3.62081 3.65930 4.00345 4.38969 4.49396 4.51544 4.69600 4.74369 4.80957 4.84518 4.90637 5.05332 5.06726 5.21691 5.23143 5.26217 5.52252 5.72902 5.84017 5.98740 6.13431 6.24131 6.44890 6.48893 6.69304 6.96316 7.19092 7.35409 7.96625 8.06505 8.51770 8.90545 10.47479 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.012311 B = 0.003092 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.834329 B = 9053.232216 C =11230.522439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.018 3.982 3 N -0.474 5.474 4 C 0.187 3.813 5 N -0.615 5.615 6 C 0.503 3.497 7 O -0.482 6.482 8 C 0.057 3.943 9 O -0.358 6.358 10 C 0.093 3.907 11 C -0.154 4.154 12 C -0.177 4.177 13 C -0.174 4.174 14 S 0.202 5.798 15 C -0.251 4.251 16 S 0.150 5.850 17 C -0.556 4.556 18 H 0.089 0.911 19 C 0.082 3.918 20 N -0.863 5.863 21 Si 0.924 3.076 22 H -0.271 1.271 23 H -0.278 1.278 24 H -0.264 1.264 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.414 0.586 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.117 0.883 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.186 19.531 0.215 22.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.124 4.124 3 N -0.196 5.196 4 C -0.184 4.184 5 N -0.266 5.266 6 C 0.287 3.713 7 O -0.354 6.354 8 C -0.023 4.023 9 O -0.276 6.276 10 C 0.016 3.984 11 C -0.172 4.172 12 C -0.214 4.214 13 C -0.211 4.211 14 S 0.446 5.554 15 C -0.488 4.488 16 S 0.400 5.600 17 C -0.705 4.705 18 H 0.107 0.893 19 C -0.129 4.129 20 N -0.496 5.496 21 Si 0.749 3.251 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.188 1.188 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.252 0.748 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.135 0.865 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.041 17.690 0.203 20.854 hybrid contribution 1.089 0.733 0.017 1.313 sum 12.130 18.423 0.220 22.059 Atomic orbital electron populations 1.20115 0.88031 1.02104 1.01783 1.19026 0.96685 0.84571 1.12151 1.65797 1.02761 1.32427 1.18591 1.23694 0.89812 0.92815 1.12052 1.42187 1.04093 1.08202 1.72074 1.20415 0.81817 0.91293 0.77756 1.90749 1.76722 1.22180 1.45701 1.21986 0.83464 0.93739 1.03148 1.88035 1.12252 1.31860 1.95432 1.22086 0.86219 0.89760 1.00326 1.22117 0.89676 1.01697 1.03721 1.23081 1.03269 1.03394 0.91609 1.22983 0.98659 0.98600 1.00820 1.85926 1.01656 0.95355 1.72437 1.28786 1.01336 1.06754 1.11904 1.83058 1.11039 0.84400 1.81470 1.23271 0.93593 0.94048 1.59565 0.89307 1.25025 0.98280 0.96667 0.92900 1.70012 1.24396 1.10310 1.44918 0.86036 0.81293 0.78756 0.79047 1.19602 1.20280 1.18833 0.91882 0.91043 0.91946 0.74850 0.89608 0.89653 0.92506 0.92830 0.86470 0.88638 0.88460 0.88317 0.88674 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.07 10.02 36.01 0.36 -0.70 16 2 C 0.02 0.38 6.73 -83.96 -0.57 -0.18 16 3 N -0.47 -9.49 10.55 -9.78 -0.10 -9.59 16 4 C 0.19 3.60 8.40 -87.20 -0.73 2.87 16 5 N -0.61 -8.73 5.40 -11.78 -0.06 -8.80 16 6 C 0.50 7.27 7.87 -10.99 -0.09 7.19 16 7 O -0.48 -9.40 14.02 -14.36 -0.20 -9.60 16 8 C 0.06 0.53 6.42 36.01 0.23 0.76 16 9 O -0.36 -4.28 9.88 -55.14 -0.54 -4.83 16 10 C 0.09 0.76 6.22 37.16 0.23 0.99 16 11 C -0.15 -1.31 6.06 -90.62 -0.55 -1.85 16 12 C -0.18 -1.28 10.18 -26.73 -0.27 -1.55 16 13 C -0.17 -1.09 10.25 -26.73 -0.27 -1.37 16 14 S 0.20 4.55 18.35 -107.50 -1.97 2.58 16 15 C -0.25 -5.85 6.67 29.46 0.20 -5.66 16 16 S 0.15 3.80 20.74 -107.50 -2.23 1.57 16 17 C -0.56 -15.34 9.26 30.80 0.29 -15.05 16 18 H 0.09 2.45 5.97 -52.49 -0.31 2.13 16 19 C 0.08 2.22 5.49 -17.49 -0.10 2.13 16 20 N -0.86 -23.98 13.22 55.47 0.73 -23.24 16 21 Si 0.92 21.00 29.55 -169.99 -5.02 15.98 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 23 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.26 -6.01 7.11 56.52 0.40 -5.61 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 26 H 0.07 1.25 7.37 -51.93 -0.38 0.87 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.41 4.15 8.82 -40.82 -0.36 3.79 16 29 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.35 7.88 -51.93 -0.41 -0.06 16 33 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.10 0.62 8.03 -51.93 -0.42 0.20 16 35 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.10 0.56 8.14 -51.92 -0.42 0.14 16 37 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.28 7.13 8.32 -40.82 -0.34 6.79 16 LS Contribution 356.27 15.07 5.37 5.37 Total: -1.00 -33.55 356.27 -10.13 -43.68 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -4.82 Total: -0.69 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: -1.27 Total: -12.43 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: 0.57 Total: -41.63 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.75 Total: -14.43 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 8.35 SS G_CDS: -4.20 Total: 4.15 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.55 -10.13 -43.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337575626.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.569 kcal (2) G-P(sol) polarization free energy of solvation -33.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds