Wall clock time and date at job start Tue Mar 31 2020 14:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31591 * 122.22989 * 2 1 4 4 C 1.29943 * 117.14102 * 179.97438 * 3 2 1 5 5 N 1.38891 * 125.36812 * 180.02562 * 4 3 2 6 6 C 1.34773 * 120.00262 * 179.97438 * 5 4 3 7 7 O 1.21293 * 120.00085 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00046 * 179.72573 * 6 5 4 9 9 O 1.42905 * 109.46835 * 180.27797 * 8 6 5 10 10 C 1.42903 * 113.99598 * 179.97438 * 9 8 6 11 11 C 1.52996 * 109.46976 * 180.02562 * 10 9 8 12 12 C 1.53001 * 117.50066 * 243.62710 * 11 10 9 13 13 C 1.52999 * 60.00048 * 252.51074 * 12 11 10 14 14 S 1.76142 * 109.26868 * 0.26500 * 4 3 2 15 15 C 1.34655 * 122.23450 * 179.97438 * 2 1 3 16 16 S 1.76206 * 125.92776 * 0.02562 * 15 2 1 17 17 C 1.76202 * 99.99921 * 179.97438 * 16 15 2 18 18 H 1.08001 * 119.99716 * 359.97438 * 17 16 15 19 19 C 1.38428 * 119.99686 * 179.97438 * 17 16 15 20 20 N 1.31810 * 120.00216 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99604 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47002 * 90.00311 * 21 19 17 23 23 H 1.48498 * 109.47009 * 210.00236 * 21 19 17 24 24 H 1.48501 * 109.47277 * 330.00447 * 21 19 17 25 25 H 1.09002 * 109.46556 * 90.02369 * 1 2 3 26 26 H 1.09001 * 109.46443 * 210.02182 * 1 2 3 27 27 H 1.08998 * 109.46853 * 330.02378 * 1 2 3 28 28 H 0.97000 * 120.00214 * 0.02562 * 5 4 3 29 29 H 1.09003 * 109.47174 * 300.27142 * 8 6 5 30 30 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 31 31 H 1.08997 * 109.47344 * 300.00160 * 10 9 8 32 32 H 1.09003 * 109.46747 * 60.00592 * 10 9 8 33 33 H 1.09004 * 115.55124 * 29.32873 * 11 10 9 34 34 H 1.09004 * 117.49964 * 359.97438 * 12 11 10 35 35 H 1.08993 * 117.50384 * 145.01954 * 12 11 10 36 36 H 1.09008 * 117.49737 * 252.50997 * 13 12 11 37 37 H 1.08998 * 117.50195 * 107.48732 * 13 12 11 38 38 H 0.96994 * 119.99761 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1132 0.0000 4 6 3.5031 0.9979 0.0005 5 7 4.4044 2.0547 0.0011 6 6 5.7297 1.8102 0.0021 7 8 6.1355 0.6671 0.0021 8 6 6.7075 2.9568 -0.0035 9 8 8.0418 2.4450 -0.0077 10 6 9.0520 3.4558 -0.0138 11 6 10.4327 2.7968 -0.0185 12 6 11.3352 3.0387 1.1931 13 6 11.6521 3.7124 -0.1435 14 16 3.9346 -0.7098 -0.0066 15 6 2.2253 -1.1390 0.0005 16 16 1.5698 -2.7746 0.0006 17 6 3.0668 -3.7041 0.0006 18 1 4.0189 -3.1943 0.0001 19 6 3.0223 -5.0877 0.0012 20 7 1.8602 -5.7098 0.0013 21 14 4.6093 -6.0730 0.0004 22 1 5.0308 -6.3336 1.4003 23 1 4.3897 -7.3645 -0.6990 24 1 5.6690 -5.3043 -0.7006 25 1 -0.3632 -0.0004 -1.0277 26 1 -0.3632 -0.8898 0.5142 27 1 -0.3633 0.8902 0.5135 28 1 4.0799 2.9688 0.0015 29 1 6.5490 3.5652 -0.8939 30 1 6.5558 3.5682 0.8861 31 1 8.9418 4.0742 -0.9046 32 1 8.9489 4.0777 0.8754 33 1 10.4857 1.8197 -0.4988 34 1 10.9454 3.6677 1.9934 35 1 11.9819 2.2207 1.5102 36 1 12.5075 3.3376 -0.7058 37 1 11.4706 4.7843 -0.2224 38 1 1.8292 -6.6792 0.0013 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337575626.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:48 Heat of formation + Delta-G solvation = -38.680502 kcal Electronic energy + Delta-G solvation = -21961.495723 eV Core-core repulsion = 18443.088750 eV Total energy + Delta-G solvation = -3518.406972 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.47470 -40.19688 -39.21202 -37.38561 -36.14408 -34.82337 -32.25930 -30.07207 -28.76892 -27.72750 -27.39845 -24.76773 -23.25096 -22.55797 -21.77173 -21.22839 -19.84635 -19.23007 -18.32484 -17.74181 -17.54722 -17.19117 -17.07222 -16.65929 -16.32081 -15.91505 -15.50009 -15.28744 -14.95453 -14.87864 -14.39070 -13.70634 -13.57296 -13.43139 -13.33510 -13.27091 -13.07990 -12.88873 -12.39131 -12.32944 -12.13946 -12.08506 -12.04438 -11.41087 -11.35620 -11.29686 -11.23572 -10.79653 -10.52615 -10.48358 -10.47383 -9.53840 -8.58461 -8.37452 -6.30526 -0.24029 0.21402 0.82480 1.17041 1.25492 1.30108 1.33044 1.41248 1.59433 2.00726 2.13649 2.64053 2.80639 2.98671 3.08688 3.43046 3.77909 3.89594 3.96711 4.11708 4.17770 4.22718 4.36189 4.43656 4.51059 4.69054 4.71657 4.77942 4.85864 4.97144 5.01500 5.05010 5.21715 5.24730 5.29159 5.47354 5.85775 6.01601 6.17086 6.77714 6.86468 6.86671 8.49318 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.012311 B = 0.003092 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.834329 B = 9053.232216 C =11230.522439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.037 3.963 3 N -0.479 5.479 4 C 0.229 3.771 5 N -0.598 5.598 6 C 0.501 3.499 7 O -0.533 6.533 8 C 0.064 3.936 9 O -0.400 6.400 10 C 0.092 3.908 11 C -0.179 4.179 12 C -0.183 4.183 13 C -0.156 4.156 14 S 0.149 5.851 15 C -0.281 4.281 16 S 0.101 5.899 17 C -0.576 4.576 18 H 0.079 0.921 19 C 0.036 3.964 20 N -0.895 5.895 21 Si 0.984 3.016 22 H -0.263 1.263 23 H -0.262 1.262 24 H -0.270 1.270 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.088 0.912 28 H 0.440 0.560 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.114 0.886 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.277 23.263 0.254 26.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.104 4.104 3 N -0.201 5.201 4 C -0.144 4.144 5 N -0.253 5.253 6 C 0.288 3.712 7 O -0.408 6.408 8 C -0.015 4.015 9 O -0.320 6.320 10 C 0.017 3.983 11 C -0.197 4.197 12 C -0.220 4.220 13 C -0.193 4.193 14 S 0.393 5.607 15 C -0.517 4.517 16 S 0.349 5.651 17 C -0.725 4.725 18 H 0.097 0.903 19 C -0.171 4.171 20 N -0.529 5.529 21 Si 0.805 3.195 22 H -0.188 1.188 23 H -0.186 1.186 24 H -0.194 1.194 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.107 0.893 28 H 0.282 0.718 29 H 0.145 0.855 30 H 0.145 0.855 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.109 0.891 34 H 0.124 0.876 35 H 0.110 0.890 36 H 0.120 0.880 37 H 0.133 0.867 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 12.140 21.507 0.242 24.698 hybrid contribution 0.875 -0.047 0.003 0.877 sum 13.015 21.459 0.246 25.099 Atomic orbital electron populations 1.20250 0.85543 1.03190 1.03135 1.19724 0.98457 0.84127 1.08110 1.66028 1.02500 1.31231 1.20305 1.24055 0.90198 0.92856 1.07316 1.42347 1.03580 1.08130 1.71198 1.21690 0.82053 0.92157 0.75328 1.90748 1.77365 1.24952 1.47718 1.22197 0.81123 0.91162 1.06987 1.87987 1.13698 1.34376 1.95892 1.22265 0.84695 0.89141 1.02240 1.22158 0.91186 1.01482 1.04903 1.23169 1.02995 1.03685 0.92119 1.23072 0.97348 0.99233 0.99602 1.86194 1.02419 0.98619 1.73442 1.28589 1.01549 1.06088 1.15443 1.82838 1.11082 0.86202 1.84984 1.23443 0.93893 0.94875 1.60259 0.90331 1.25859 1.01348 0.97404 0.92507 1.70085 1.26032 1.10738 1.46068 0.85156 0.77289 0.77682 0.79362 1.18793 1.18636 1.19415 0.90273 0.91408 0.89343 0.71770 0.85463 0.85517 0.90469 0.90763 0.89132 0.87585 0.89032 0.87994 0.86738 0.90881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.07 10.02 71.24 0.71 -1.36 16 2 C 0.04 1.54 6.73 41.77 0.28 1.83 16 3 N -0.48 -18.14 10.55 -184.87 -1.95 -20.09 16 4 C 0.23 8.43 8.40 179.15 1.50 9.93 16 5 N -0.60 -15.13 5.40 -309.57 -1.67 -16.80 16 6 C 0.50 13.25 7.87 87.66 0.69 13.94 16 7 O -0.53 -20.65 14.02 15.97 0.22 -20.43 16 8 C 0.06 0.93 6.42 71.24 0.46 1.39 16 9 O -0.40 -8.64 9.88 -129.94 -1.28 -9.92 16 10 C 0.09 1.23 6.22 71.98 0.45 1.67 16 11 C -0.18 -2.82 6.06 -10.79 -0.07 -2.88 16 12 C -0.18 -2.37 10.18 30.59 0.31 -2.06 16 13 C -0.16 -1.62 10.25 30.59 0.31 -1.30 16 14 S 0.15 6.83 18.35 -56.49 -1.04 5.80 16 15 C -0.28 -13.42 6.67 67.00 0.45 -12.97 16 16 S 0.10 5.38 20.74 -56.49 -1.17 4.20 16 17 C -0.58 -33.29 9.26 67.87 0.63 -32.66 16 18 H 0.08 4.57 5.97 -2.91 -0.02 4.55 16 19 C 0.04 2.02 5.49 84.74 0.47 2.48 16 20 N -0.89 -51.31 13.22 21.59 0.29 -51.03 16 21 Si 0.98 44.21 29.55 68.60 2.03 46.24 16 22 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 23 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 25 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 26 H 0.07 2.35 7.37 -2.39 -0.02 2.33 16 27 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 28 H 0.44 6.77 8.82 -92.71 -0.82 5.95 16 29 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 0.66 7.88 -2.39 -0.02 0.64 16 33 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.11 1.13 8.03 -2.39 -0.02 1.11 16 35 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.28 14.88 8.32 -92.71 -0.77 14.11 16 Total: -1.00 -77.65 356.27 1.90 -75.75 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 0.28 Total: 8.27 kcal Atomic # 6 Polarization: -28.19 SS G_CDS: 6.19 Total: -21.99 kcal Atomic # 7 Polarization: -84.58 SS G_CDS: -3.34 Total: -87.92 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -1.06 Total: -30.35 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: 12.21 SS G_CDS: -2.21 Total: 10.00 kcal Total: -77.65 1.90 -75.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337575626.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.070 kcal (2) G-P(sol) polarization free energy of solvation -77.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds