Wall clock time and date at job start Tue Mar 31 2020 15:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00392 * 2 1 4 4 H 1.48499 * 109.47226 * 270.00673 * 3 2 1 5 5 H 1.48503 * 109.46695 * 30.00228 * 3 2 1 6 6 H 1.48495 * 109.47502 * 150.00501 * 3 2 1 7 7 C 1.37878 * 119.99807 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00059 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99860 * 179.97438 * 7 2 1 10 10 N 1.46502 * 109.46855 * 180.02562 * 9 7 2 11 11 C 1.34781 * 119.99961 * 180.02562 * 10 9 7 12 12 O 1.21665 * 119.99926 * 359.97438 * 11 10 9 13 13 C 1.46912 * 120.00126 * 179.97438 * 11 10 9 14 14 C 1.35921 * 125.44624 * 179.69550 * 13 11 10 15 15 C 1.41516 * 107.76402 * 180.26538 * 14 13 11 16 16 C 1.40189 * 133.26563 * 180.02562 * 15 14 13 17 17 C 1.36298 * 119.90321 * 179.97438 * 16 15 14 18 18 C 1.39469 * 120.56279 * 0.02562 * 17 16 15 19 19 O 1.35837 * 119.74560 * 179.97438 * 18 17 16 20 20 C 1.42905 * 116.99691 * 0.02562 * 19 18 17 21 21 F 1.39902 * 109.47286 * 59.99581 * 20 19 18 22 22 F 1.39894 * 109.46708 * 179.97438 * 20 19 18 23 23 F 1.39895 * 109.46763 * 299.99548 * 20 19 18 24 24 C 1.38218 * 120.51509 * 359.97438 * 18 17 16 25 25 C 1.39087 * 119.77146 * 359.97438 * 24 18 17 26 26 N 1.37521 * 133.10264 * 180.02562 * 25 24 18 27 27 H 0.97002 * 125.63159 * 359.97438 * 26 25 24 28 28 H 0.97005 * 119.99582 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47202 * 60.00404 * 9 7 2 30 30 H 1.08999 * 109.47651 * 299.99888 * 9 7 2 31 31 H 0.96993 * 120.00252 * 359.97438 * 10 9 7 32 32 H 1.08005 * 126.11894 * 0.24442 * 14 13 11 33 33 H 1.07992 * 120.04863 * 0.02562 * 16 15 14 34 34 H 1.08000 * 119.72085 * 180.02562 * 17 16 15 35 35 H 1.08002 * 120.11697 * 179.97438 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9998 -2.5754 -0.0022 11 6 5.3249 -2.8217 -0.0024 12 8 6.1155 -1.8970 -0.0021 13 6 5.8145 -4.2068 -0.0029 14 6 7.1212 -4.5809 -0.0090 15 6 7.1654 -5.9954 -0.0135 16 6 8.2156 -6.9239 -0.0199 17 6 7.9421 -8.2592 -0.0226 18 6 6.6233 -8.7130 -0.0195 19 8 6.3698 -10.0475 -0.0228 20 6 7.4996 -10.9224 -0.0287 21 9 8.2755 -10.6899 1.1120 22 9 7.0606 -12.2507 -0.0308 23 9 8.2687 -10.6832 -1.1725 24 6 5.5723 -7.8154 -0.0133 25 6 5.8312 -6.4488 -0.0094 26 7 5.0195 -5.3387 -0.0027 27 1 4.0496 -5.3478 0.0003 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.6805 0.8888 30 1 3.8746 -0.6801 -0.8911 31 1 3.3695 -3.3126 -0.0021 32 1 7.9734 -3.9174 -0.0105 33 1 9.2399 -6.5818 -0.0218 34 1 8.7535 -8.9719 -0.0270 35 1 4.5535 -8.1738 -0.0114 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340457019.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:25 Heat of formation + Delta-G solvation = -171.864017 kcal Electronic energy + Delta-G solvation = -26381.840039 eV Core-core repulsion = 21737.604233 eV Total energy + Delta-G solvation = -4644.235805 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.79714 -48.52396 -48.37919 -41.81364 -39.96392 -38.75718 -36.15524 -34.60517 -32.54392 -32.31992 -30.00211 -29.28203 -27.94041 -26.14391 -24.30237 -22.73218 -22.22099 -21.20716 -20.25889 -19.93769 -19.50366 -19.34970 -18.52199 -17.22389 -16.65314 -16.31984 -15.65779 -15.55451 -15.27559 -15.21701 -15.12903 -14.89127 -14.82961 -14.76004 -14.60230 -14.49959 -14.20550 -13.99027 -13.96936 -13.66958 -13.27107 -13.11755 -12.51815 -12.36584 -12.26641 -11.47704 -11.36516 -11.15510 -10.86874 -10.08453 -10.03558 -9.76260 -9.61617 -8.90786 -8.56909 -8.41858 -7.90091 -6.31711 -4.35640 0.50871 1.10172 1.17180 1.99164 2.40368 2.84581 3.19858 3.27013 3.34200 3.37308 3.42583 3.59226 3.62721 3.68110 4.24298 4.28995 4.51758 4.59872 4.86510 4.99336 5.03616 5.05734 5.21822 5.49818 5.63135 5.76490 5.93656 6.09101 6.31539 6.45482 6.62630 6.73394 6.91185 6.93200 7.16206 7.22424 7.93047 8.28349 8.52439 8.66820 9.26833 10.79926 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.032338 B = 0.002164 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.658459 B =12938.359229 C =13624.207739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.079 3.921 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.549 4.549 8 H 0.079 0.921 9 C 0.220 3.780 10 N -0.698 5.698 11 C 0.566 3.434 12 O -0.534 6.534 13 C 0.037 3.963 14 C -0.112 4.112 15 C -0.129 4.129 16 C -0.016 4.016 17 C -0.217 4.217 18 C 0.124 3.876 19 O -0.310 6.310 20 C 0.606 3.394 21 F -0.164 7.164 22 F -0.133 7.133 23 F -0.164 7.164 24 C -0.136 4.136 25 C 0.139 3.861 26 N -0.570 5.570 27 H 0.424 0.576 28 H 0.269 0.731 29 H 0.031 0.969 30 H 0.026 0.974 31 H 0.392 0.608 32 H 0.159 0.841 33 H 0.137 0.863 34 H 0.133 0.867 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.598 -22.114 -0.024 27.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.125 4.125 3 Si 0.703 3.297 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.587 4.587 8 H 0.097 0.903 9 C 0.098 3.902 10 N -0.346 5.346 11 C 0.350 3.650 12 O -0.412 6.412 13 C -0.073 4.073 14 C -0.138 4.138 15 C -0.134 4.134 16 C -0.035 4.035 17 C -0.237 4.237 18 C 0.081 3.919 19 O -0.229 6.229 20 C 0.515 3.485 21 F -0.146 7.146 22 F -0.115 7.115 23 F -0.146 7.146 24 C -0.157 4.157 25 C 0.027 3.973 26 N -0.175 5.175 27 H 0.263 0.737 28 H 0.079 0.921 29 H 0.048 0.952 30 H 0.044 0.956 31 H 0.226 0.774 32 H 0.177 0.823 33 H 0.155 0.845 34 H 0.151 0.849 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 15.647 -21.309 -0.020 26.436 hybrid contribution -0.353 0.185 -0.022 0.399 sum 15.294 -21.124 -0.042 26.079 Atomic orbital electron populations 1.69873 1.06239 1.27620 1.48863 1.24791 0.94819 0.99252 0.93664 0.86806 0.80576 0.83112 0.79165 1.19725 1.20778 1.18416 1.21024 0.88263 0.95296 1.54080 0.90293 1.19606 0.95511 0.77775 0.97293 1.46159 1.05084 1.11587 1.71725 1.17214 0.83459 0.85908 0.78412 1.90823 1.55552 1.43586 1.51249 1.20606 0.91102 0.86563 1.09038 1.20873 0.95463 0.92926 1.04537 1.18239 0.92228 0.93784 1.09172 1.20172 0.98529 0.90729 0.94064 1.20948 0.94235 0.97797 1.10687 1.18036 0.93959 0.78610 1.01315 1.86353 1.30790 1.16590 1.89214 1.19295 0.76496 0.77917 0.74779 1.93308 1.75546 1.94209 1.51581 1.93306 1.89895 1.31945 1.96321 1.93306 1.75901 1.94089 1.51338 1.18854 0.98482 0.88039 1.10346 1.17679 0.90231 0.87450 1.01939 1.42060 1.08817 1.03539 1.63070 0.73725 0.92102 0.95152 0.95610 0.77425 0.82336 0.84537 0.84894 0.84321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.63 13.96 55.43 0.77 -24.85 16 2 C 0.08 2.16 5.47 -17.82 -0.10 2.07 16 3 Si 0.88 20.68 27.47 -169.99 -4.67 16.01 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.26 -6.05 6.54 56.52 0.37 -5.68 16 7 C -0.55 -14.40 9.83 -34.44 -0.34 -14.74 16 8 H 0.08 2.14 7.84 -52.49 -0.41 1.73 16 9 C 0.22 5.12 4.50 -5.19 -0.02 5.10 16 10 N -0.70 -13.23 5.54 -62.72 -0.35 -13.58 16 11 C 0.57 10.36 7.79 -12.75 -0.10 10.26 16 12 O -0.53 -11.56 16.84 5.22 0.09 -11.48 16 13 C 0.04 0.53 6.97 -82.26 -0.57 -0.04 16 14 C -0.11 -1.48 10.53 -39.16 -0.41 -1.90 16 15 C -0.13 -1.53 6.16 -106.90 -0.66 -2.19 16 16 C -0.02 -0.16 10.05 -39.55 -0.40 -0.56 16 17 C -0.22 -2.07 8.17 -39.82 -0.33 -2.39 16 18 C 0.12 1.27 6.48 -39.13 -0.25 1.02 16 19 O -0.31 -2.99 10.36 -19.23 -0.20 -3.19 16 20 C 0.61 5.02 3.42 101.05 0.35 5.36 16 21 F -0.16 -1.35 15.54 2.25 0.03 -1.32 16 22 F -0.13 -1.06 17.53 2.25 0.04 -1.02 16 23 F -0.16 -1.35 15.54 2.25 0.03 -1.31 16 24 C -0.14 -1.40 10.00 -39.27 -0.39 -1.79 16 25 C 0.14 1.61 7.25 -83.99 -0.61 1.00 16 26 N -0.57 -6.70 6.08 -7.36 -0.04 -6.75 16 27 H 0.42 4.03 8.12 -40.82 -0.33 3.70 16 28 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.03 0.75 7.20 -51.93 -0.37 0.37 16 30 H 0.03 0.63 7.57 -51.93 -0.39 0.23 16 31 H 0.39 6.35 7.38 -40.82 -0.30 6.05 16 32 H 0.16 1.94 8.06 -52.48 -0.42 1.52 16 33 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.13 1.08 5.04 -52.49 -0.26 0.81 16 35 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 321.86 15.07 4.85 4.85 Total: -1.00 -30.76 321.86 -5.78 -36.54 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -2.51 Total: 4.89 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -3.83 Total: 1.21 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 0.38 Total: -45.18 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.11 Total: -14.67 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.11 Total: -3.65 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.67 Total: 16.01 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.76 -5.78 -36.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340457019.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.322 kcal (2) G-P(sol) polarization free energy of solvation -30.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds