Wall clock time and date at job start Tue Mar 31 2020 15:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00392 * 2 1 4 4 H 1.48499 * 109.47226 * 270.00673 * 3 2 1 5 5 H 1.48503 * 109.46695 * 30.00228 * 3 2 1 6 6 H 1.48495 * 109.47502 * 150.00501 * 3 2 1 7 7 C 1.37878 * 119.99807 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00059 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99860 * 179.97438 * 7 2 1 10 10 N 1.46502 * 109.46855 * 180.02562 * 9 7 2 11 11 C 1.34781 * 119.99961 * 180.02562 * 10 9 7 12 12 O 1.21665 * 119.99926 * 359.97438 * 11 10 9 13 13 C 1.46912 * 120.00126 * 179.97438 * 11 10 9 14 14 C 1.35921 * 125.44624 * 179.69550 * 13 11 10 15 15 C 1.41516 * 107.76402 * 180.26538 * 14 13 11 16 16 C 1.40189 * 133.26563 * 180.02562 * 15 14 13 17 17 C 1.36298 * 119.90321 * 179.97438 * 16 15 14 18 18 C 1.39469 * 120.56279 * 0.02562 * 17 16 15 19 19 O 1.35837 * 119.74560 * 179.97438 * 18 17 16 20 20 C 1.42905 * 116.99691 * 0.02562 * 19 18 17 21 21 F 1.39902 * 109.47286 * 59.99581 * 20 19 18 22 22 F 1.39894 * 109.46708 * 179.97438 * 20 19 18 23 23 F 1.39895 * 109.46763 * 299.99548 * 20 19 18 24 24 C 1.38218 * 120.51509 * 359.97438 * 18 17 16 25 25 C 1.39087 * 119.77146 * 359.97438 * 24 18 17 26 26 N 1.37521 * 133.10264 * 180.02562 * 25 24 18 27 27 H 0.97002 * 125.63159 * 359.97438 * 26 25 24 28 28 H 0.97005 * 119.99582 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47202 * 60.00404 * 9 7 2 30 30 H 1.08999 * 109.47651 * 299.99888 * 9 7 2 31 31 H 0.96993 * 120.00252 * 359.97438 * 10 9 7 32 32 H 1.08005 * 126.11894 * 0.24442 * 14 13 11 33 33 H 1.07992 * 120.04863 * 0.02562 * 16 15 14 34 34 H 1.08000 * 119.72085 * 180.02562 * 17 16 15 35 35 H 1.08002 * 120.11697 * 179.97438 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9998 -2.5754 -0.0022 11 6 5.3249 -2.8217 -0.0024 12 8 6.1155 -1.8970 -0.0021 13 6 5.8145 -4.2068 -0.0029 14 6 7.1212 -4.5809 -0.0090 15 6 7.1654 -5.9954 -0.0135 16 6 8.2156 -6.9239 -0.0199 17 6 7.9421 -8.2592 -0.0226 18 6 6.6233 -8.7130 -0.0195 19 8 6.3698 -10.0475 -0.0228 20 6 7.4996 -10.9224 -0.0287 21 9 8.2755 -10.6899 1.1120 22 9 7.0606 -12.2507 -0.0308 23 9 8.2687 -10.6832 -1.1725 24 6 5.5723 -7.8154 -0.0133 25 6 5.8312 -6.4488 -0.0094 26 7 5.0195 -5.3387 -0.0027 27 1 4.0496 -5.3478 0.0003 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.6805 0.8888 30 1 3.8746 -0.6801 -0.8911 31 1 3.3695 -3.3126 -0.0021 32 1 7.9734 -3.9174 -0.0105 33 1 9.2399 -6.5818 -0.0218 34 1 8.7535 -8.9719 -0.0270 35 1 4.5535 -8.1738 -0.0114 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340457019.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:25 Heat of formation + Delta-G solvation = -192.766267 kcal Electronic energy + Delta-G solvation = -26382.746428 eV Core-core repulsion = 21737.604233 eV Total energy + Delta-G solvation = -4645.142195 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.44947 -49.16895 -49.03114 -42.75643 -40.88219 -40.09451 -37.01801 -36.33426 -34.48841 -33.23656 -31.08695 -30.40882 -29.42584 -26.89970 -25.54998 -23.82955 -23.46409 -22.41090 -21.41195 -20.78786 -20.25452 -20.16149 -19.70156 -18.55805 -17.93410 -17.35004 -16.77132 -16.70106 -16.62755 -16.26177 -15.95286 -15.74972 -15.68724 -15.62040 -15.45596 -15.28365 -15.23651 -15.00787 -14.91937 -14.76815 -14.53893 -14.37122 -14.11562 -14.00850 -13.21321 -13.04698 -12.72921 -12.31227 -12.13858 -11.94789 -11.70263 -11.31257 -10.95087 -10.94162 -10.13904 -9.39738 -8.84228 -8.42019 -6.50040 -0.42071 0.36067 0.39286 0.91904 1.33629 1.36224 1.47907 1.64328 1.96529 2.21371 2.22709 2.27659 2.61231 2.75951 2.93875 2.99494 3.52708 3.68008 3.73520 3.84898 4.07575 4.25056 4.28068 4.58996 4.74973 4.79962 4.97511 4.97952 5.09335 5.19049 5.27097 5.30851 5.42983 5.56029 5.87230 6.03154 6.28077 6.48453 6.65821 7.04071 7.20200 8.72369 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.032338 B = 0.002164 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.658459 B =12938.359229 C =13624.207739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.027 3.973 3 Si 0.937 3.063 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.257 1.257 7 C -0.549 4.549 8 H 0.060 0.940 9 C 0.231 3.769 10 N -0.698 5.698 11 C 0.572 3.428 12 O -0.572 6.572 13 C 0.010 3.990 14 C -0.098 4.098 15 C -0.148 4.148 16 C -0.008 4.008 17 C -0.219 4.219 18 C 0.127 3.873 19 O -0.315 6.315 20 C 0.610 3.390 21 F -0.162 7.162 22 F -0.131 7.131 23 F -0.162 7.162 24 C -0.144 4.144 25 C 0.139 3.861 26 N -0.563 5.563 27 H 0.431 0.569 28 H 0.273 0.727 29 H 0.021 0.979 30 H 0.019 0.981 31 H 0.405 0.595 32 H 0.165 0.835 33 H 0.164 0.836 34 H 0.149 0.851 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.353 -23.469 -0.059 29.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.174 4.174 3 Si 0.760 3.240 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.181 1.181 7 C -0.587 4.587 8 H 0.078 0.922 9 C 0.107 3.893 10 N -0.347 5.347 11 C 0.359 3.641 12 O -0.452 6.452 13 C -0.099 4.099 14 C -0.125 4.125 15 C -0.152 4.152 16 C -0.027 4.027 17 C -0.238 4.238 18 C 0.083 3.917 19 O -0.235 6.235 20 C 0.520 3.480 21 F -0.144 7.144 22 F -0.112 7.112 23 F -0.144 7.144 24 C -0.165 4.165 25 C 0.027 3.973 26 N -0.169 5.169 27 H 0.272 0.728 28 H 0.082 0.918 29 H 0.038 0.962 30 H 0.037 0.963 31 H 0.240 0.760 32 H 0.183 0.817 33 H 0.182 0.818 34 H 0.167 0.833 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 17.390 -22.709 -0.056 28.603 hybrid contribution -0.839 0.369 -0.012 0.916 sum 16.551 -22.340 -0.067 27.803 Atomic orbital electron populations 1.69978 1.07741 1.28702 1.50409 1.25599 0.95544 1.02745 0.93472 0.85861 0.79379 0.79190 0.79529 1.18937 1.19993 1.18063 1.21240 0.89765 0.94643 1.53060 0.92199 1.19221 0.93539 0.80083 0.96425 1.45929 1.05998 1.10371 1.72366 1.17553 0.82496 0.87217 0.76842 1.90789 1.56234 1.45305 1.52905 1.19967 0.91865 0.85317 1.12788 1.21069 0.95075 0.93896 1.02421 1.18388 0.93096 0.93330 1.10424 1.20468 0.99361 0.90341 0.92496 1.21176 0.94415 0.98098 1.10097 1.18214 0.94322 0.78905 1.00260 1.86345 1.31601 1.16445 1.89074 1.19201 0.76223 0.77772 0.74821 1.93315 1.75410 1.94193 1.51495 1.93317 1.89872 1.31706 1.96311 1.93313 1.75765 1.94074 1.51251 1.18999 0.99533 0.87479 1.10511 1.17859 0.90201 0.87770 1.01472 1.41922 1.09154 1.02880 1.62948 0.72801 0.91799 0.96155 0.96273 0.75956 0.81730 0.81838 0.83336 0.82769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.28 13.96 21.45 0.30 -53.98 16 2 C 0.03 1.49 5.47 84.65 0.46 1.95 16 3 Si 0.94 42.65 27.47 68.60 1.88 44.54 16 4 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 6 H -0.26 -11.46 6.54 99.48 0.65 -10.81 16 7 C -0.55 -29.21 9.83 25.60 0.25 -28.96 16 8 H 0.06 3.33 7.84 -2.91 -0.02 3.31 16 9 C 0.23 10.81 4.50 85.63 0.38 11.20 16 10 N -0.70 -26.63 5.54 -470.59 -2.61 -29.24 16 11 C 0.57 20.96 7.79 86.51 0.67 21.63 16 12 O -0.57 -24.89 16.84 -4.24 -0.07 -24.97 16 13 C 0.01 0.28 6.97 39.85 0.28 0.56 16 14 C -0.10 -2.47 10.53 22.54 0.24 -2.23 16 15 C -0.15 -3.20 6.16 -21.34 -0.13 -3.33 16 16 C -0.01 -0.14 10.05 22.29 0.22 0.09 16 17 C -0.22 -3.52 8.17 22.11 0.18 -3.34 16 18 C 0.13 2.28 6.48 22.56 0.15 2.43 16 19 O -0.31 -5.34 10.36 -91.72 -0.95 -6.29 16 20 C 0.61 8.68 3.42 113.37 0.39 9.07 16 21 F -0.16 -2.26 15.54 44.97 0.70 -1.56 16 22 F -0.13 -1.82 17.53 44.97 0.79 -1.03 16 23 F -0.16 -2.26 15.54 44.97 0.70 -1.56 16 24 C -0.14 -2.66 10.00 22.47 0.22 -2.43 16 25 C 0.14 2.99 7.25 39.11 0.28 3.27 16 26 N -0.56 -12.70 6.08 -177.19 -1.08 -13.78 16 27 H 0.43 7.89 8.12 -92.71 -0.75 7.14 16 28 H 0.27 14.86 8.31 -92.70 -0.77 14.09 16 29 H 0.02 1.00 7.20 -2.39 -0.02 0.99 16 30 H 0.02 0.93 7.57 -2.39 -0.02 0.92 16 31 H 0.41 13.21 7.38 -92.71 -0.68 12.53 16 32 H 0.17 3.83 8.06 -2.91 -0.02 3.81 16 33 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 34 H 0.15 1.92 5.04 -2.91 -0.01 1.90 16 35 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -65.44 321.86 2.98 -62.46 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -0.29 Total: 15.51 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: 3.60 Total: 9.90 kcal Atomic # 7 Polarization: -93.62 SS G_CDS: -3.39 Total: -97.01 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -1.02 Total: -31.26 kcal Atomic # 9 Polarization: -6.34 SS G_CDS: 2.19 Total: -4.15 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 1.88 Total: 44.54 kcal Total: -65.44 2.98 -62.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340457019.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.303 kcal (2) G-P(sol) polarization free energy of solvation -65.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds