Wall clock time and date at job start Tue Mar 31 2020 15:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86796 * 120.00096 * 2 1 4 4 H 1.48509 * 109.47242 * 269.99925 * 3 2 1 5 5 H 1.48497 * 109.47458 * 29.99591 * 3 2 1 6 6 H 1.48504 * 109.47410 * 150.00083 * 3 2 1 7 7 C 1.37879 * 119.99959 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99791 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99817 * 359.97438 * 7 2 1 10 10 S 1.81007 * 109.46998 * 180.02562 * 9 7 2 11 11 C 1.76196 * 99.99951 * 180.02562 * 10 9 7 12 12 N 1.31055 * 125.09375 * 0.02562 * 11 10 9 13 13 C 1.35896 * 109.66943 * 179.97438 * 12 11 10 14 14 C 1.39718 * 133.34944 * 180.02562 * 13 12 11 15 15 C 1.37703 * 119.78136 * 180.02562 * 14 13 12 16 16 C 1.38698 * 120.49760 * 0.03627 * 15 14 13 17 17 C 1.37989 * 120.42825 * 359.94098 * 16 15 14 18 18 C 1.38635 * 119.85338 * 0.04274 * 17 16 15 19 19 N 1.36857 * 125.09251 * 180.02562 * 11 10 9 20 20 C 1.40210 * 126.41097 * 0.03991 * 19 11 10 21 21 C 1.38836 * 120.04333 * 114.69851 * 20 19 11 22 22 C 1.38113 * 119.95444 * 179.81199 * 21 20 19 23 23 C 1.38479 * 120.04229 * 0.44369 * 22 21 20 24 24 F 1.35096 * 119.95076 * 179.76821 * 23 22 21 25 25 C 1.38473 * 120.08466 * 359.78596 * 23 22 21 26 26 C 1.38112 * 120.04358 * 0.02562 * 25 23 22 27 27 H 0.97001 * 120.00023 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47291 * 60.00757 * 9 7 2 29 29 H 1.08998 * 109.47235 * 299.99871 * 9 7 2 30 30 H 1.07997 * 120.11178 * 359.97354 * 14 13 12 31 31 H 1.07998 * 119.74903 * 180.02562 * 15 14 13 32 32 H 1.08004 * 119.79017 * 179.97438 * 16 15 14 33 33 H 1.08002 * 120.07571 * 180.31033 * 17 16 15 34 34 H 1.07995 * 120.01880 * 359.97438 * 21 20 19 35 35 H 1.07995 * 119.97675 * 180.18556 * 22 21 20 36 36 H 1.08002 * 119.97466 * 179.97438 * 25 23 22 37 37 H 1.08003 * 120.02127 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4991 0.0017 10 16 2.4271 -3.8749 0.0029 11 6 1.3070 -5.2350 0.0034 12 7 0.0003 -5.1350 0.0024 13 6 -0.5535 -6.3760 0.0025 14 6 -1.8721 -6.8378 0.0013 15 6 -2.1226 -8.1919 0.0024 16 6 -1.0755 -9.1014 0.0055 17 6 0.2324 -8.6614 0.0062 18 6 0.5031 -7.3017 0.0048 19 7 1.6713 -6.5542 0.0048 20 6 2.9805 -7.0562 0.0069 21 6 3.4482 -7.7731 1.0999 22 6 4.7369 -8.2700 1.0985 23 6 5.5652 -8.0457 0.0116 24 9 6.8269 -8.5286 0.0141 25 6 5.1019 -7.3267 -1.0774 26 6 3.8126 -6.8315 -1.0813 27 1 -0.4850 0.8401 -0.0004 28 1 0.6240 -2.5575 -0.8880 29 1 0.6246 -2.5563 0.8920 30 1 -2.6923 -6.1352 0.0004 31 1 -3.1421 -8.5482 0.0011 32 1 -1.2850 -10.1609 0.0067 33 1 1.0434 -9.3746 0.0035 34 1 2.8040 -7.9444 1.9496 35 1 5.1001 -8.8304 1.9472 36 1 5.7496 -7.1525 -1.9240 37 1 3.4519 -6.2705 -1.9308 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342026526.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:43 Heat of formation + Delta-G solvation = 53.259531 kcal Electronic energy + Delta-G solvation = -23819.637583 eV Core-core repulsion = 20182.146268 eV Total energy + Delta-G solvation = -3637.491315 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.074 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.16843 -41.99581 -39.19601 -37.03748 -34.01964 -33.20974 -31.55855 -30.62994 -29.32991 -28.75707 -28.49348 -23.76617 -23.52083 -23.44198 -22.75561 -21.75679 -20.67879 -18.36475 -17.81059 -17.34524 -16.77655 -16.54322 -16.11584 -15.84299 -15.04285 -14.98819 -14.87347 -14.37643 -14.33282 -13.93037 -13.85280 -13.49545 -13.14310 -12.97647 -12.65928 -12.48202 -12.44838 -11.96983 -11.75610 -11.40061 -11.38875 -10.93479 -10.87951 -10.53986 -10.46426 -9.79139 -9.72636 -9.48291 -9.30754 -8.96053 -8.82967 -8.53862 -8.02103 -6.88841 -6.23574 -4.32006 0.61205 0.88018 1.05817 1.59739 1.73727 2.73282 2.84708 3.18132 3.22855 3.28889 3.30590 3.44437 3.92979 4.00377 4.29959 4.42197 4.46817 4.51978 4.86271 4.98362 4.99500 5.02323 5.13007 5.28408 5.42369 5.49263 5.55822 5.57060 5.75214 5.79764 5.83460 6.00252 6.18572 6.42031 6.47853 6.56894 6.66245 6.96449 7.07814 7.19245 7.20998 7.64111 7.88825 8.00619 8.68808 9.31803 10.86715 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.009453 B = 0.004258 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2961.424116 B = 6573.790792 C = 9282.010857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.072 3.928 3 Si 0.907 3.093 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.528 4.528 8 H 0.067 0.933 9 C 0.079 3.921 10 S -0.051 6.051 11 C 0.289 3.711 12 N -0.485 5.485 13 C 0.067 3.933 14 C -0.069 4.069 15 C -0.128 4.128 16 C -0.114 4.114 17 C -0.106 4.106 18 C 0.048 3.952 19 N -0.447 5.447 20 C 0.121 3.879 21 C -0.078 4.078 22 C -0.142 4.142 23 C 0.106 3.894 24 F -0.136 7.136 25 C -0.138 4.138 26 C -0.070 4.070 27 H 0.268 0.732 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.130 0.870 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.117 0.883 34 H 0.138 0.862 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.634 -19.644 -0.107 20.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.133 4.133 3 Si 0.734 3.266 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.568 4.568 8 H 0.085 0.915 9 C -0.068 4.068 10 S 0.182 5.818 11 C -0.081 4.081 12 N -0.208 5.208 13 C -0.053 4.053 14 C -0.090 4.090 15 C -0.148 4.148 16 C -0.134 4.134 17 C -0.127 4.127 18 C -0.060 4.060 19 N -0.138 5.138 20 C 0.030 3.970 21 C -0.098 4.098 22 C -0.161 4.161 23 C 0.086 3.914 24 F -0.115 7.115 25 C -0.157 4.157 26 C -0.090 4.090 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.148 0.852 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.135 0.865 34 H 0.156 0.844 35 H 0.162 0.838 36 H 0.164 0.836 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.336 -18.751 -0.102 19.496 hybrid contribution -0.309 0.085 0.024 0.321 sum 5.028 -18.667 -0.078 19.332 Atomic orbital electron populations 1.69976 1.06111 1.27522 1.48156 1.24925 0.94956 0.99145 0.94317 0.86351 0.79714 0.82152 0.78427 1.20237 1.20833 1.19507 1.20591 0.93278 0.88608 1.54326 0.91485 1.21359 0.93760 0.89032 1.02674 1.85715 1.11322 0.94713 1.90011 1.26427 0.95102 0.87397 0.99202 1.71272 1.03271 1.22118 1.24152 1.19202 0.93672 0.88757 1.03672 1.20310 0.93437 0.95433 0.99795 1.20842 0.99107 0.92264 1.02631 1.20781 0.91383 0.99414 1.01842 1.19874 0.97316 0.90895 1.04651 1.18942 0.85467 0.94113 1.07464 1.42611 1.02989 1.04963 1.63218 1.17568 0.83666 1.00436 0.95353 1.21053 0.95254 0.96555 0.96898 1.20988 0.93530 1.02982 0.98644 1.17748 0.79976 0.97709 0.95948 1.91517 1.37176 1.86004 1.96767 1.21032 0.96398 0.99527 0.98780 1.21136 0.92792 0.97666 0.97381 0.92267 0.92764 0.92788 0.85209 0.85525 0.85595 0.86452 0.84376 0.83835 0.83629 0.83894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.42 13.29 55.43 0.74 -24.69 16 2 C 0.07 1.98 5.46 -17.82 -0.10 1.88 16 3 Si 0.91 20.77 29.54 -169.99 -5.02 15.75 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.53 -14.38 9.13 -34.44 -0.31 -14.70 16 8 H 0.07 1.77 7.71 -52.49 -0.40 1.37 16 9 C 0.08 2.05 4.91 36.00 0.18 2.23 16 10 S -0.05 -1.07 21.56 -107.50 -2.32 -3.39 16 11 C 0.29 5.88 7.86 -88.23 -0.69 5.18 16 12 N -0.49 -10.59 10.57 -10.84 -0.11 -10.70 16 13 C 0.07 1.25 7.22 -84.67 -0.61 0.64 16 14 C -0.07 -1.06 10.10 -39.22 -0.40 -1.45 16 15 C -0.13 -1.53 10.01 -39.61 -0.40 -1.92 16 16 C -0.11 -1.28 10.03 -39.50 -0.40 -1.68 16 17 C -0.11 -1.38 10.02 -39.53 -0.40 -1.78 16 18 C 0.05 0.79 6.79 -83.77 -0.57 0.22 16 19 N -0.45 -7.60 2.87 -58.38 -0.17 -7.77 16 20 C 0.12 1.69 5.42 -83.58 -0.45 1.24 16 21 C -0.08 -0.91 9.92 -39.41 -0.39 -1.30 16 22 C -0.14 -1.41 10.02 -39.54 -0.40 -1.81 16 23 C 0.11 1.12 7.30 -39.41 -0.29 0.83 16 24 F -0.14 -1.46 17.26 2.25 0.04 -1.42 16 25 C -0.14 -1.46 10.02 -39.54 -0.40 -1.85 16 26 C -0.07 -0.88 9.68 -39.41 -0.38 -1.26 16 27 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.05 1.51 8.14 -51.92 -0.42 1.09 16 29 H 0.05 1.51 8.14 -51.92 -0.42 1.09 16 30 H 0.13 1.86 8.06 -52.49 -0.42 1.43 16 31 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 32 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 33 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 35 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.14 1.82 8.06 -52.48 -0.42 1.39 16 LS Contribution 347.05 15.07 5.23 5.23 Total: -1.00 -30.70 347.05 -11.38 -42.08 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -3.77 Total: 0.44 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -6.00 Total: -15.53 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 0.45 Total: -43.15 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: -1.07 SS G_CDS: -2.32 Total: -3.39 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.70 -11.38 -42.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342026526.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.342 kcal (2) G-P(sol) polarization free energy of solvation -30.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds