Wall clock time and date at job start Tue Mar 31 2020 15:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86796 * 120.00096 * 2 1 4 4 H 1.48509 * 109.47242 * 269.99925 * 3 2 1 5 5 H 1.48497 * 109.47458 * 29.99591 * 3 2 1 6 6 H 1.48504 * 109.47410 * 150.00083 * 3 2 1 7 7 C 1.37879 * 119.99959 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99791 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99817 * 359.97438 * 7 2 1 10 10 S 1.81007 * 109.46998 * 180.02562 * 9 7 2 11 11 C 1.76196 * 99.99951 * 180.02562 * 10 9 7 12 12 N 1.31055 * 125.09375 * 0.02562 * 11 10 9 13 13 C 1.35896 * 109.66943 * 179.97438 * 12 11 10 14 14 C 1.39718 * 133.34944 * 180.02562 * 13 12 11 15 15 C 1.37703 * 119.78136 * 180.02562 * 14 13 12 16 16 C 1.38698 * 120.49760 * 0.03627 * 15 14 13 17 17 C 1.37989 * 120.42825 * 359.94098 * 16 15 14 18 18 C 1.38635 * 119.85338 * 0.04274 * 17 16 15 19 19 N 1.36857 * 125.09251 * 180.02562 * 11 10 9 20 20 C 1.40210 * 126.41097 * 0.03991 * 19 11 10 21 21 C 1.38836 * 120.04333 * 114.69851 * 20 19 11 22 22 C 1.38113 * 119.95444 * 179.81199 * 21 20 19 23 23 C 1.38479 * 120.04229 * 0.44369 * 22 21 20 24 24 F 1.35096 * 119.95076 * 179.76821 * 23 22 21 25 25 C 1.38473 * 120.08466 * 359.78596 * 23 22 21 26 26 C 1.38112 * 120.04358 * 0.02562 * 25 23 22 27 27 H 0.97001 * 120.00023 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47291 * 60.00757 * 9 7 2 29 29 H 1.08998 * 109.47235 * 299.99871 * 9 7 2 30 30 H 1.07997 * 120.11178 * 359.97354 * 14 13 12 31 31 H 1.07998 * 119.74903 * 180.02562 * 15 14 13 32 32 H 1.08004 * 119.79017 * 179.97438 * 16 15 14 33 33 H 1.08002 * 120.07571 * 180.31033 * 17 16 15 34 34 H 1.07995 * 120.01880 * 359.97438 * 21 20 19 35 35 H 1.07995 * 119.97675 * 180.18556 * 22 21 20 36 36 H 1.08002 * 119.97466 * 179.97438 * 25 23 22 37 37 H 1.08003 * 120.02127 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4991 0.0017 10 16 2.4271 -3.8749 0.0029 11 6 1.3070 -5.2350 0.0034 12 7 0.0003 -5.1350 0.0024 13 6 -0.5535 -6.3760 0.0025 14 6 -1.8721 -6.8378 0.0013 15 6 -2.1226 -8.1919 0.0024 16 6 -1.0755 -9.1014 0.0055 17 6 0.2324 -8.6614 0.0062 18 6 0.5031 -7.3017 0.0048 19 7 1.6713 -6.5542 0.0048 20 6 2.9805 -7.0562 0.0069 21 6 3.4482 -7.7731 1.0999 22 6 4.7369 -8.2700 1.0985 23 6 5.5652 -8.0457 0.0116 24 9 6.8269 -8.5286 0.0141 25 6 5.1019 -7.3267 -1.0774 26 6 3.8126 -6.8315 -1.0813 27 1 -0.4850 0.8401 -0.0004 28 1 0.6240 -2.5575 -0.8880 29 1 0.6246 -2.5563 0.8920 30 1 -2.6923 -6.1352 0.0004 31 1 -3.1421 -8.5482 0.0011 32 1 -1.2850 -10.1609 0.0067 33 1 1.0434 -9.3746 0.0035 34 1 2.8040 -7.9444 1.9496 35 1 5.1001 -8.8304 1.9472 36 1 5.7496 -7.1525 -1.9240 37 1 3.4519 -6.2705 -1.9308 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342026526.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:43 Heat of formation + Delta-G solvation = 38.741140 kcal Electronic energy + Delta-G solvation = -23820.267148 eV Core-core repulsion = 20182.146268 eV Total energy + Delta-G solvation = -3638.120880 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.074 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.01635 -43.25209 -40.14981 -38.13746 -35.42111 -35.13089 -32.43952 -31.67412 -30.91132 -30.32167 -29.75242 -25.53088 -24.60874 -24.48951 -24.14136 -22.93235 -21.81319 -19.52504 -18.85318 -18.61861 -18.23375 -17.75363 -17.65521 -16.69236 -16.66236 -16.26764 -15.91134 -15.71882 -15.36933 -14.97321 -14.81431 -14.73393 -14.57244 -14.40011 -14.36056 -14.06546 -13.60548 -12.95259 -12.92395 -12.75854 -12.70753 -12.50910 -12.41552 -12.35919 -11.68753 -11.65733 -11.35036 -11.07869 -10.79115 -10.33834 -10.01372 -9.93435 -9.15781 -8.47703 -8.34240 -6.52312 -0.38639 -0.09594 0.01532 0.18672 0.49992 1.34514 1.41151 1.43232 1.53426 1.55011 1.69211 2.26781 2.35734 2.84936 3.00275 3.06344 3.28601 3.56543 3.68179 3.91516 3.98501 4.06384 4.08359 4.30231 4.36919 4.45046 4.52304 4.72719 4.80429 4.87617 4.89282 4.91516 5.00498 5.02579 5.18216 5.35805 5.50548 5.51665 5.52926 5.55069 5.77306 5.90866 6.03848 6.56211 6.65093 7.17302 8.77948 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.009453 B = 0.004258 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2961.424116 B = 6573.790792 C = 9282.010857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.018 3.982 3 Si 0.982 3.018 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.259 1.259 7 C -0.546 4.546 8 H 0.074 0.926 9 C 0.085 3.915 10 S -0.019 6.019 11 C 0.259 3.741 12 N -0.531 5.531 13 C 0.018 3.982 14 C -0.092 4.092 15 C -0.112 4.112 16 C -0.092 4.092 17 C -0.108 4.108 18 C 0.040 3.960 19 N -0.436 5.436 20 C 0.089 3.911 21 C -0.077 4.077 22 C -0.128 4.128 23 C 0.108 3.892 24 F -0.134 7.134 25 C -0.131 4.131 26 C -0.082 4.082 27 H 0.271 0.729 28 H 0.019 0.981 29 H 0.017 0.983 30 H 0.125 0.875 31 H 0.166 0.834 32 H 0.174 0.826 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.174 0.826 36 H 0.168 0.832 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.066 -22.614 0.231 23.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.184 4.184 3 Si 0.804 3.196 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.183 1.183 7 C -0.586 4.586 8 H 0.092 0.908 9 C -0.063 4.063 10 S 0.214 5.786 11 C -0.113 4.113 12 N -0.255 5.255 13 C -0.101 4.101 14 C -0.113 4.113 15 C -0.131 4.131 16 C -0.111 4.111 17 C -0.129 4.129 18 C -0.068 4.068 19 N -0.126 5.126 20 C -0.001 4.001 21 C -0.096 4.096 22 C -0.147 4.147 23 C 0.088 3.912 24 F -0.112 7.112 25 C -0.150 4.150 26 C -0.101 4.101 27 H 0.080 0.920 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.143 0.857 31 H 0.184 0.816 32 H 0.192 0.808 33 H 0.162 0.838 34 H 0.163 0.837 35 H 0.192 0.808 36 H 0.185 0.815 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.784 -21.766 0.234 22.800 hybrid contribution -0.849 0.694 -0.086 1.100 sum 5.935 -21.072 0.148 21.892 Atomic orbital electron populations 1.70121 1.08064 1.28747 1.49006 1.25988 0.95807 1.03271 0.93354 0.85199 0.78526 0.76918 0.78929 1.19193 1.20235 1.18271 1.20964 0.93700 0.89496 1.54415 0.90779 1.20857 0.94394 0.91860 0.99196 1.85065 1.09319 0.93012 1.91179 1.26017 0.94787 0.88549 1.01902 1.71103 1.04583 1.25006 1.24792 1.19677 0.95725 0.88192 1.06510 1.20589 0.92196 0.97337 1.01143 1.21326 1.01486 0.90580 0.99754 1.21399 0.90078 1.01594 0.98074 1.20312 0.99183 0.89475 1.03961 1.19358 0.84555 0.95231 1.07622 1.42601 1.04404 1.03637 1.61931 1.17937 0.82789 1.02304 0.97064 1.21126 0.96077 0.96199 0.96247 1.21249 0.92349 1.01898 0.99160 1.17837 0.80043 0.97297 0.96008 1.91531 1.37042 1.85891 1.96746 1.21206 0.95600 0.98568 0.99592 1.21118 0.93614 0.98373 0.97038 0.91966 0.96300 0.96418 0.85684 0.81631 0.80815 0.83818 0.83707 0.80809 0.81473 0.84938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.78 13.29 21.45 0.28 -55.49 16 2 C 0.02 1.00 5.46 84.66 0.46 1.46 16 3 Si 0.98 43.26 29.54 68.60 2.03 45.29 16 4 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 5 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 7 C -0.55 -31.16 9.13 25.60 0.23 -30.92 16 8 H 0.07 4.02 7.71 -2.91 -0.02 4.00 16 9 C 0.09 4.79 4.91 71.24 0.35 5.14 16 10 S -0.02 -0.84 21.56 -56.49 -1.22 -2.06 16 11 C 0.26 11.27 7.86 179.51 1.41 12.69 16 12 N -0.53 -25.17 10.57 -188.22 -1.99 -27.16 16 13 C 0.02 0.71 7.22 39.42 0.28 1.00 16 14 C -0.09 -2.86 10.10 22.50 0.23 -2.63 16 15 C -0.11 -2.34 10.01 22.25 0.22 -2.11 16 16 C -0.09 -1.67 10.03 22.32 0.22 -1.44 16 17 C -0.11 -2.53 10.02 22.31 0.22 -2.31 16 18 C 0.04 1.33 6.79 38.70 0.26 1.60 16 19 N -0.44 -15.28 2.87 -338.62 -0.97 -16.25 16 20 C 0.09 2.47 5.42 38.08 0.21 2.67 16 21 C -0.08 -1.67 9.92 22.38 0.22 -1.44 16 22 C -0.13 -2.15 10.02 22.30 0.22 -1.93 16 23 C 0.11 1.99 7.30 22.38 0.16 2.15 16 24 F -0.13 -2.47 17.26 44.97 0.78 -1.70 16 25 C -0.13 -2.53 10.02 22.30 0.22 -2.31 16 26 C -0.08 -2.04 9.68 22.38 0.22 -1.82 16 27 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 28 H 0.02 1.15 8.14 -2.40 -0.02 1.13 16 29 H 0.02 1.08 8.14 -2.40 -0.02 1.06 16 30 H 0.13 3.81 8.06 -2.91 -0.02 3.79 16 31 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 32 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 33 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 34 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 35 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 36 H 0.17 2.43 8.06 -2.91 -0.02 2.40 16 37 H 0.13 3.52 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -73.24 347.05 5.17 -68.07 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: 1.10 Total: 9.52 kcal Atomic # 6 Polarization: -25.38 SS G_CDS: 5.16 Total: -20.22 kcal Atomic # 7 Polarization: -96.23 SS G_CDS: -2.67 Total: -98.90 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.78 Total: -1.70 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: -0.84 SS G_CDS: -1.22 Total: -2.06 kcal Total: -73.24 5.17 -68.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342026526.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.812 kcal (2) G-P(sol) polarization free energy of solvation -73.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds