Wall clock time and date at job start Tue Mar 31 2020 15:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 119.99936 * 2 1 4 4 H 1.48499 * 109.46869 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46994 * 300.00143 * 3 2 1 6 6 H 1.48502 * 109.47247 * 60.00045 * 3 2 1 7 7 C 1.37871 * 119.99835 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99867 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00188 * 359.97438 * 7 2 1 10 10 S 1.80998 * 109.47052 * 180.02562 * 9 7 2 11 11 C 1.76211 * 99.99807 * 180.02562 * 10 9 7 12 12 N 1.32292 * 118.79971 * 180.02562 * 11 10 9 13 13 C 1.33059 * 120.57212 * 179.97438 * 12 11 10 14 14 C 1.40949 * 118.91527 * 359.97438 * 13 12 11 15 15 C 1.41269 * 106.99758 * 179.97438 * 14 13 12 16 16 N 1.30267 * 108.52838 * 359.75296 * 15 14 13 17 17 N 1.36623 * 134.55862 * 179.97438 * 13 12 11 18 18 C 1.40048 * 125.89113 * 359.97438 * 17 13 12 19 19 C 1.38875 * 120.06708 * 145.00059 * 18 17 13 20 20 C 1.38103 * 119.93030 * 179.97438 * 19 18 17 21 21 C 1.38285 * 120.07042 * 0.02562 * 20 19 18 22 22 C 1.38287 * 120.13989 * 0.02562 * 21 20 19 23 23 C 1.38112 * 120.07216 * 359.97438 * 22 21 20 24 24 C 1.40672 * 118.42062 * 0.02562 * 14 13 12 25 25 O 1.35365 * 120.73379 * 180.02562 * 24 14 13 26 26 N 1.32533 * 118.53624 * 0.02562 * 24 14 13 27 27 H 0.97002 * 119.99896 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.46696 * 60.00262 * 9 7 2 29 29 H 1.08997 * 109.47251 * 300.00261 * 9 7 2 30 30 H 1.08000 * 125.73617 * 180.02562 * 15 14 13 31 31 H 1.08001 * 120.03532 * 359.96026 * 19 18 17 32 32 H 1.08000 * 119.96725 * 180.02562 * 20 19 18 33 33 H 1.08003 * 119.93218 * 179.72398 * 21 20 19 34 34 H 1.08007 * 119.96922 * 180.02562 * 22 21 20 35 35 H 1.07994 * 120.03734 * 180.02562 * 23 22 21 36 36 H 0.96693 * 114.00197 * 90.00021 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 16 2.4272 -3.8749 -0.0005 11 6 1.3071 -5.2351 -0.0013 12 7 1.7968 -6.4640 -0.0010 13 6 0.9831 -7.5168 -0.0010 14 6 -0.4098 -7.3016 -0.0009 15 6 -1.0243 -8.5736 -0.0016 16 7 -0.0922 -9.4836 -0.0074 17 7 1.1671 -8.8706 -0.0012 18 6 2.4020 -9.5313 -0.0019 19 6 2.5514 -10.7277 0.6873 20 6 3.7702 -11.3771 0.6843 21 6 4.8413 -10.8371 -0.0036 22 6 4.6961 -9.6454 -0.6900 23 6 3.4799 -8.9910 -0.6909 24 6 -0.8826 -5.9767 -0.0013 25 8 -2.2109 -5.7161 -0.0006 26 7 0.0013 -4.9891 -0.0022 27 1 -0.4850 0.8401 0.0004 28 1 0.6241 -2.5567 -0.8904 29 1 0.6247 -2.5571 0.8896 30 1 -2.0880 -8.7603 -0.0021 31 1 1.7153 -11.1497 1.2253 32 1 3.8869 -12.3078 1.2198 33 1 5.7947 -11.3445 -0.0007 34 1 5.5345 -9.2263 -1.2267 35 1 3.3670 -8.0606 -1.2274 36 1 -2.5964 -5.6400 0.8829 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342288667.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:59 Heat of formation + Delta-G solvation = 107.997460 kcal Electronic energy + Delta-G solvation = -23782.817348 eV Core-core repulsion = 20167.619609 eV Total energy + Delta-G solvation = -3615.197739 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.19296 -39.68719 -38.69336 -37.45496 -33.91078 -33.27009 -32.59916 -31.19980 -30.28223 -29.25526 -28.63145 -24.91276 -24.28181 -23.31332 -22.98011 -22.38999 -20.94900 -19.37407 -18.61461 -17.51190 -16.87659 -16.78085 -16.28893 -15.97384 -15.85404 -15.20934 -14.73311 -14.58307 -14.43845 -14.14592 -13.64572 -13.56045 -13.29028 -12.90562 -12.45457 -12.23229 -12.13976 -11.88634 -11.69755 -11.40133 -11.10804 -10.96200 -10.93451 -10.72965 -10.23987 -9.89817 -9.69810 -9.48181 -9.36292 -9.20311 -9.12667 -8.67279 -8.31293 -7.09950 -6.24888 -4.32835 0.31528 0.87264 1.15210 1.41613 1.61597 2.08444 2.26343 3.10324 3.21537 3.29168 3.34436 3.49125 3.52593 3.78498 4.11250 4.28893 4.33557 4.55489 4.68418 4.72219 4.85618 4.92412 5.00630 5.11970 5.16336 5.29841 5.47703 5.71766 5.81227 6.00816 6.10884 6.23490 6.28503 6.45812 6.75838 7.05763 7.07040 7.18172 7.20123 7.39185 7.64030 7.88175 8.05935 8.68683 9.31214 10.85398 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.016370 B = 0.003170 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.083748 B = 8829.356344 C =10429.192944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.072 3.928 3 Si 0.907 3.093 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.527 4.527 8 H 0.068 0.932 9 C 0.064 3.936 10 S -0.002 6.002 11 C 0.371 3.629 12 N -0.533 5.533 13 C 0.374 3.626 14 C -0.322 4.322 15 C 0.124 3.876 16 N -0.252 5.252 17 N -0.338 5.338 18 C 0.162 3.838 19 C -0.115 4.115 20 C -0.106 4.106 21 C -0.125 4.125 22 C -0.098 4.098 23 C -0.112 4.112 24 C 0.466 3.534 25 O -0.469 6.469 26 N -0.548 5.548 27 H 0.267 0.733 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.205 0.795 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.127 0.873 34 H 0.133 0.867 35 H 0.137 0.863 36 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.383 -20.529 1.677 20.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.134 4.134 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.568 4.568 8 H 0.087 0.913 9 C -0.083 4.083 10 S 0.238 5.762 11 C -0.003 4.003 12 N -0.261 5.261 13 C 0.125 3.875 14 C -0.340 4.340 15 C -0.074 4.074 16 N -0.063 5.063 17 N -0.122 5.122 18 C 0.071 3.929 19 C -0.135 4.135 20 C -0.124 4.124 21 C -0.144 4.144 22 C -0.117 4.117 23 C -0.133 4.133 24 C 0.263 3.737 25 O -0.277 6.277 26 N -0.277 5.277 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.221 0.779 31 H 0.149 0.851 32 H 0.148 0.852 33 H 0.145 0.855 34 H 0.151 0.849 35 H 0.155 0.845 36 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 3.500 -20.879 1.083 21.198 hybrid contribution -2.065 1.029 0.442 2.349 sum 1.435 -19.850 1.525 19.960 Atomic orbital electron populations 1.69989 1.06098 1.27369 1.48395 1.24932 0.94972 0.99182 0.94314 0.86298 0.80059 0.82455 0.77854 1.19342 1.20625 1.20634 1.20666 0.93391 0.88646 1.54052 0.91345 1.21469 0.94358 0.89708 1.02774 1.85970 1.11246 0.93847 1.85170 1.25480 0.90816 0.94623 0.89421 1.67818 1.37535 0.96153 1.24633 1.19035 0.89583 0.86250 0.92618 1.20152 0.95266 0.95708 1.22895 1.23846 0.99872 0.88017 0.95629 1.77053 0.86942 1.20940 1.21371 1.45404 1.04174 1.00275 1.62342 1.17440 0.81895 0.94264 0.99351 1.20939 0.98627 0.94720 0.99256 1.21002 0.92144 0.99916 0.99387 1.21244 0.99045 0.96185 0.97885 1.21035 0.96616 0.94974 0.99058 1.21161 0.92315 1.01117 0.98667 1.18976 0.84880 0.85057 0.84773 1.84608 1.15588 1.93179 1.34341 1.68649 1.02336 1.35429 1.21327 0.92376 0.92624 0.92708 0.77889 0.85120 0.85236 0.85493 0.84941 0.84549 0.72664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.99 13.29 55.43 0.74 -24.26 16 2 C 0.07 1.94 5.46 -17.82 -0.10 1.84 16 3 Si 0.91 20.60 29.54 -169.99 -5.02 15.58 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.53 -14.21 9.13 -34.44 -0.31 -14.52 16 8 H 0.07 1.80 7.71 -52.49 -0.40 1.40 16 9 C 0.06 1.63 4.54 36.01 0.16 1.79 16 10 S 0.00 -0.04 22.16 -107.50 -2.38 -2.42 16 11 C 0.37 7.58 7.84 -90.79 -0.71 6.87 16 12 N -0.53 -10.20 9.57 -12.75 -0.12 -10.32 16 13 C 0.37 6.51 7.52 -156.03 -1.17 5.33 16 14 C -0.32 -4.97 6.19 -106.80 -0.66 -5.63 16 15 C 0.12 1.50 12.05 -17.06 -0.21 1.30 16 16 N -0.25 -3.49 12.21 30.83 0.38 -3.11 16 17 N -0.34 -5.27 3.76 -9.92 -0.04 -5.31 16 18 C 0.16 2.29 6.40 -83.63 -0.54 1.75 16 19 C -0.12 -1.34 9.76 -39.40 -0.38 -1.72 16 20 C -0.11 -0.98 10.04 -39.61 -0.40 -1.38 16 21 C -0.12 -1.12 10.04 -39.55 -0.40 -1.52 16 22 C -0.10 -1.03 10.04 -39.61 -0.40 -1.43 16 23 C -0.11 -1.50 9.39 -39.39 -0.37 -1.87 16 24 C 0.47 7.65 7.89 -16.33 -0.13 7.52 16 25 O -0.47 -6.10 13.58 -17.79 -0.24 -6.35 16 26 N -0.55 -11.01 9.08 -13.23 -0.12 -11.13 16 27 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.06 1.51 8.10 -51.91 -0.42 1.09 16 29 H 0.05 1.46 8.10 -51.92 -0.42 1.04 16 30 H 0.20 1.50 8.06 -52.49 -0.42 1.07 16 31 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 32 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.13 0.79 8.06 -52.48 -0.42 0.36 16 34 H 0.13 1.10 8.06 -52.48 -0.42 0.67 16 35 H 0.14 2.02 7.22 -52.49 -0.38 1.64 16 36 H 0.41 3.08 9.06 45.56 0.41 3.49 16 LS Contribution 339.59 15.07 5.12 5.12 Total: -1.00 -32.57 339.59 -9.77 -42.34 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -2.46 Total: 1.52 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -5.61 Total: -1.66 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: 0.83 Total: -54.14 kcal Atomic # 8 Polarization: -6.10 SS G_CDS: -0.24 Total: -6.35 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -2.38 Total: -2.42 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.57 -9.77 -42.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342288667.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.336 kcal (2) G-P(sol) polarization free energy of solvation -32.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds