Wall clock time and date at job start Tue Mar 31 2020 15:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 119.99936 * 2 1 4 4 H 1.48499 * 109.46869 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46994 * 300.00143 * 3 2 1 6 6 H 1.48502 * 109.47247 * 60.00045 * 3 2 1 7 7 C 1.37871 * 119.99835 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99867 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00188 * 359.97438 * 7 2 1 10 10 S 1.80998 * 109.47052 * 180.02562 * 9 7 2 11 11 C 1.76211 * 99.99807 * 180.02562 * 10 9 7 12 12 N 1.32292 * 118.79971 * 180.02562 * 11 10 9 13 13 C 1.33059 * 120.57212 * 179.97438 * 12 11 10 14 14 C 1.40949 * 118.91527 * 359.97438 * 13 12 11 15 15 C 1.41269 * 106.99758 * 179.97438 * 14 13 12 16 16 N 1.30267 * 108.52838 * 359.75296 * 15 14 13 17 17 N 1.36623 * 134.55862 * 179.97438 * 13 12 11 18 18 C 1.40048 * 125.89113 * 359.97438 * 17 13 12 19 19 C 1.38875 * 120.06708 * 145.00059 * 18 17 13 20 20 C 1.38103 * 119.93030 * 179.97438 * 19 18 17 21 21 C 1.38285 * 120.07042 * 0.02562 * 20 19 18 22 22 C 1.38287 * 120.13989 * 0.02562 * 21 20 19 23 23 C 1.38112 * 120.07216 * 359.97438 * 22 21 20 24 24 C 1.40672 * 118.42062 * 0.02562 * 14 13 12 25 25 O 1.35365 * 120.73379 * 180.02562 * 24 14 13 26 26 N 1.32533 * 118.53624 * 0.02562 * 24 14 13 27 27 H 0.97002 * 119.99896 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.46696 * 60.00262 * 9 7 2 29 29 H 1.08997 * 109.47251 * 300.00261 * 9 7 2 30 30 H 1.08000 * 125.73617 * 180.02562 * 15 14 13 31 31 H 1.08001 * 120.03532 * 359.96026 * 19 18 17 32 32 H 1.08000 * 119.96725 * 180.02562 * 20 19 18 33 33 H 1.08003 * 119.93218 * 179.72398 * 21 20 19 34 34 H 1.08007 * 119.96922 * 180.02562 * 22 21 20 35 35 H 1.07994 * 120.03734 * 180.02562 * 23 22 21 36 36 H 0.96693 * 114.00197 * 90.00021 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 16 2.4272 -3.8749 -0.0005 11 6 1.3071 -5.2351 -0.0013 12 7 1.7968 -6.4640 -0.0010 13 6 0.9831 -7.5168 -0.0010 14 6 -0.4098 -7.3016 -0.0009 15 6 -1.0243 -8.5736 -0.0016 16 7 -0.0922 -9.4836 -0.0074 17 7 1.1671 -8.8706 -0.0012 18 6 2.4020 -9.5313 -0.0019 19 6 2.5514 -10.7277 0.6873 20 6 3.7702 -11.3771 0.6843 21 6 4.8413 -10.8371 -0.0036 22 6 4.6961 -9.6454 -0.6900 23 6 3.4799 -8.9910 -0.6909 24 6 -0.8826 -5.9767 -0.0013 25 8 -2.2109 -5.7161 -0.0006 26 7 0.0013 -4.9891 -0.0022 27 1 -0.4850 0.8401 0.0004 28 1 0.6241 -2.5567 -0.8904 29 1 0.6247 -2.5571 0.8896 30 1 -2.0880 -8.7603 -0.0021 31 1 1.7153 -11.1497 1.2253 32 1 3.8869 -12.3078 1.2198 33 1 5.7947 -11.3445 -0.0007 34 1 5.5345 -9.2263 -1.2267 35 1 3.3670 -8.0606 -1.2274 36 1 -2.5964 -5.6400 0.8829 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342288667.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:58 Heat of formation + Delta-G solvation = 85.924942 kcal Electronic energy + Delta-G solvation = -23783.774484 eV Core-core repulsion = 20167.619609 eV Total energy + Delta-G solvation = -3616.154875 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.42166 -40.80783 -39.70028 -38.66938 -35.33102 -34.96674 -33.92127 -32.08168 -31.53603 -30.71316 -30.20809 -26.36647 -25.48563 -24.92765 -24.26188 -23.37572 -22.00159 -20.49478 -19.95697 -18.83435 -18.53056 -17.89842 -17.71231 -17.31391 -16.98002 -16.54436 -16.24413 -15.69393 -15.52484 -15.10736 -15.00017 -14.91621 -14.45518 -14.38175 -14.20275 -13.77385 -13.36487 -13.07384 -12.75397 -12.65799 -12.58568 -12.48853 -12.38159 -12.12751 -11.75945 -11.60471 -11.21181 -11.06187 -10.83150 -10.66193 -10.58393 -10.04151 -9.34882 -8.75790 -8.31234 -6.47603 -0.95322 -0.29239 0.13047 0.30114 0.31486 0.84111 1.19027 1.40767 1.43623 1.44935 1.59517 2.16028 2.37064 2.38360 2.62613 2.97490 3.03530 3.05665 3.33737 3.68243 3.79357 3.88097 3.95671 4.19498 4.38739 4.42502 4.53017 4.69778 4.95730 4.97649 4.99656 5.07605 5.26369 5.31277 5.41044 5.47144 5.55921 5.70166 5.82595 5.97679 6.12103 6.41836 6.60704 6.66904 7.21327 8.80598 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.016370 B = 0.003170 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.083748 B = 8829.356344 C =10429.192944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.020 3.980 3 Si 0.978 3.022 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.548 4.548 8 H 0.071 0.929 9 C 0.078 3.922 10 S 0.003 5.997 11 C 0.359 3.641 12 N -0.540 5.540 13 C 0.346 3.654 14 C -0.316 4.316 15 C 0.143 3.857 16 N -0.256 5.256 17 N -0.338 5.338 18 C 0.124 3.876 19 C -0.120 4.120 20 C -0.098 4.098 21 C -0.113 4.113 22 C -0.101 4.101 23 C -0.135 4.135 24 C 0.472 3.528 25 O -0.464 6.464 26 N -0.586 5.586 27 H 0.271 0.729 28 H 0.025 0.975 29 H 0.029 0.971 30 H 0.256 0.744 31 H 0.136 0.864 32 H 0.166 0.834 33 H 0.164 0.836 34 H 0.151 0.849 35 H 0.110 0.890 36 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.931 -22.878 2.197 23.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.182 4.182 3 Si 0.801 3.199 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.198 1.198 7 C -0.587 4.587 8 H 0.089 0.911 9 C -0.070 4.070 10 S 0.241 5.759 11 C -0.018 4.018 12 N -0.268 5.268 13 C 0.097 3.903 14 C -0.333 4.333 15 C -0.054 4.054 16 N -0.067 5.067 17 N -0.121 5.121 18 C 0.033 3.967 19 C -0.140 4.140 20 C -0.116 4.116 21 C -0.131 4.131 22 C -0.120 4.120 23 C -0.156 4.156 24 C 0.271 3.729 25 O -0.276 6.276 26 N -0.317 5.317 27 H 0.080 0.920 28 H 0.043 0.957 29 H 0.048 0.952 30 H 0.271 0.729 31 H 0.154 0.846 32 H 0.183 0.817 33 H 0.182 0.818 34 H 0.169 0.831 35 H 0.128 0.872 36 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges 4.017 -23.308 1.623 23.707 hybrid contribution -2.294 1.434 0.284 2.720 sum 1.723 -21.874 1.907 22.025 Atomic orbital electron populations 1.70106 1.07768 1.28564 1.49122 1.25900 0.95835 1.02958 0.93506 0.85207 0.78952 0.77624 0.78127 1.18442 1.19984 1.19818 1.21025 0.93723 0.89744 1.54196 0.91064 1.20985 0.94549 0.91449 1.00002 1.85573 1.10243 0.93016 1.87077 1.25060 0.90981 0.94598 0.91116 1.67689 1.38322 0.96244 1.24570 1.19330 0.90548 0.86806 0.93600 1.20361 0.94765 0.96519 1.21696 1.24620 1.01703 0.85688 0.93397 1.77070 0.86664 1.21294 1.21651 1.45684 1.05268 0.99558 1.61543 1.17843 0.81644 0.95712 1.01480 1.21138 1.00010 0.93898 0.98972 1.21459 0.90964 1.00628 0.98565 1.21698 1.00469 0.95087 0.95874 1.21341 0.95930 0.95524 0.99190 1.21150 0.93803 1.00895 0.99763 1.19038 0.85533 0.84850 0.83491 1.84576 1.13564 1.93012 1.36453 1.68577 1.02691 1.37302 1.23117 0.92009 0.95652 0.95220 0.72855 0.84600 0.81673 0.81804 0.83087 0.87181 0.69777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.54 13.29 21.45 0.28 -53.25 16 2 C 0.02 1.11 5.46 84.65 0.46 1.57 16 3 Si 0.98 42.62 29.54 68.60 2.03 44.65 16 4 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 5 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.55 -30.53 9.13 25.60 0.23 -30.29 16 8 H 0.07 3.84 7.71 -2.91 -0.02 3.82 16 9 C 0.08 4.21 4.54 71.24 0.32 4.53 16 10 S 0.00 0.14 22.16 -56.49 -1.25 -1.11 16 11 C 0.36 15.46 7.84 180.41 1.41 16.87 16 12 N -0.54 -21.63 9.57 -194.25 -1.86 -23.49 16 13 C 0.35 12.27 7.52 134.11 1.01 13.28 16 14 C -0.32 -9.55 6.19 -21.28 -0.13 -9.68 16 15 C 0.14 3.12 12.05 85.67 1.03 4.15 16 16 N -0.26 -6.69 12.21 -56.38 -0.69 -7.38 16 17 N -0.34 -10.50 3.76 -185.30 -0.70 -11.20 16 18 C 0.12 3.48 6.40 38.13 0.24 3.72 16 19 C -0.12 -2.60 9.76 22.39 0.22 -2.38 16 20 C -0.10 -1.48 10.04 22.25 0.22 -1.26 16 21 C -0.11 -1.65 10.04 22.29 0.22 -1.42 16 22 C -0.10 -1.99 10.04 22.25 0.22 -1.76 16 23 C -0.14 -3.71 9.39 22.39 0.21 -3.50 16 24 C 0.47 15.53 7.89 85.18 0.67 16.20 16 25 O -0.46 -11.56 13.58 -86.56 -1.18 -12.73 16 26 N -0.59 -24.60 9.08 -308.68 -2.80 -27.40 16 27 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 28 H 0.03 1.47 8.10 -2.39 -0.02 1.45 16 29 H 0.03 1.69 8.10 -2.40 -0.02 1.67 16 30 H 0.26 2.61 8.06 -2.91 -0.02 2.58 16 31 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 32 H 0.17 1.33 8.06 -2.91 -0.02 1.30 16 33 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16 34 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 35 H 0.11 3.52 7.22 -2.91 -0.02 3.50 16 36 H 0.44 5.81 9.06 -74.06 -0.67 5.14 16 Total: -1.00 -74.98 339.59 0.68 -74.31 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: 0.48 Total: 7.58 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: 6.36 Total: 10.04 kcal Atomic # 7 Polarization: -116.96 SS G_CDS: -5.76 Total: -122.72 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: -1.18 Total: -12.73 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 16 Polarization: 0.14 SS G_CDS: -1.25 Total: -1.11 kcal Total: -74.98 0.68 -74.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342288667.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.231 kcal (2) G-P(sol) polarization free energy of solvation -74.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds