Wall clock time and date at job start Tue Mar 31 2020 15:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86800 * 120.00254 * 2 1 4 4 H 1.48499 * 109.47128 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46931 * 299.99614 * 3 2 1 6 6 H 1.48490 * 109.47155 * 59.99256 * 3 2 1 7 7 C 1.39950 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00011 * 197.72795 * 7 2 1 9 9 C 1.41400 * 119.99509 * 17.72383 * 7 2 1 10 10 C 1.40707 * 120.24843 * 24.53120 * 9 7 2 11 11 C 1.37623 * 119.74849 * 180.22492 * 10 9 7 12 12 C 1.38630 * 120.24117 * 359.52215 * 11 10 9 13 13 C 1.50700 * 119.74498 * 180.22751 * 12 11 10 14 14 S 1.81005 * 109.47059 * 90.00315 * 13 12 11 15 15 C 1.76204 * 100.00042 * 180.02562 * 14 13 12 16 16 N 1.31714 * 118.21742 * 180.02562 * 15 14 13 17 17 C 1.34733 * 120.26653 * 179.97438 * 16 15 14 18 18 N 1.31523 * 135.44175 * 179.97438 * 17 16 15 19 19 N 1.39988 * 109.05574 * 179.97438 * 18 17 16 20 20 H 0.97003 * 125.03203 * 180.02562 * 19 18 17 21 21 C 1.33911 * 109.93789 * 0.02562 * 19 18 17 22 22 C 1.37862 * 107.82794 * 359.97438 * 21 19 18 23 23 C 1.41648 * 135.71625 * 180.02562 * 22 21 19 24 24 O 1.35215 * 120.84869 * 0.02562 * 23 22 21 25 25 N 1.32143 * 118.30392 * 179.75691 * 23 22 21 26 26 C 1.38629 * 120.50679 * 0.25281 * 12 11 10 27 27 C 1.37618 * 120.24753 * 359.97438 * 26 12 11 28 28 H 0.97005 * 119.99803 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.12916 * 0.02562 * 10 9 7 30 30 H 1.08001 * 119.87639 * 179.79220 * 11 10 9 31 31 H 1.09000 * 109.47339 * 210.00089 * 13 12 11 32 32 H 1.09003 * 109.47470 * 330.00527 * 13 12 11 33 33 H 1.08004 * 126.07967 * 179.97438 * 21 19 18 34 34 H 0.96691 * 114.00082 * 89.99768 * 24 23 22 35 35 H 1.08002 * 119.88011 * 179.97438 * 26 12 11 36 36 H 1.08002 * 120.12831 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8836 2.3963 -1.2126 6 1 1.8835 2.3964 1.2123 7 6 2.0080 -1.2120 0.0005 8 1 3.0494 -1.2341 0.2853 9 6 1.3512 -2.4076 -0.3717 10 6 0.2202 -2.3643 -1.2076 11 6 -0.4139 -3.5339 -1.5598 12 6 0.0638 -4.7522 -1.1021 13 6 -0.6361 -6.0265 -1.4988 14 16 0.0871 -6.6598 -3.0325 15 6 -0.8912 -8.1081 -3.2569 16 7 -0.6521 -8.8643 -4.3084 17 6 -1.3749 -9.9815 -4.5199 18 7 -1.3951 -10.9252 -5.4357 19 7 -2.3930 -11.8529 -5.1141 20 1 -2.6070 -12.6433 -5.6341 21 6 -3.0083 -11.4877 -3.9822 22 6 -2.4255 -10.3179 -3.5435 23 6 -2.6084 -9.4442 -2.4437 24 8 -3.5541 -9.6935 -1.5099 25 7 -1.8276 -8.3822 -2.3505 26 6 1.1801 -4.8072 -0.2819 27 6 1.8272 -3.6499 0.0867 28 1 -0.4850 0.8401 -0.0004 29 1 -0.1510 -1.4166 -1.5689 30 1 -1.2842 -3.5028 -2.1985 31 1 -0.5176 -6.7674 -0.7082 32 1 -1.6964 -5.8259 -1.6529 33 1 -3.8172 -12.0157 -3.4991 34 1 -3.2436 -10.2330 -0.7700 35 1 1.5433 -5.7618 0.0691 36 1 2.6969 -3.6951 0.7254 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342480059.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:11 Heat of formation + Delta-G solvation = 96.017037 kcal Electronic energy + Delta-G solvation = -23075.002943 eV Core-core repulsion = 19459.285694 eV Total energy + Delta-G solvation = -3615.717249 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.98568 -39.37830 -37.68658 -37.64729 -34.06011 -33.25206 -31.30519 -31.25193 -30.61171 -29.34695 -27.62422 -25.88583 -23.87725 -23.57312 -21.67495 -21.05525 -20.27165 -19.46861 -18.89726 -17.94020 -17.36568 -16.60125 -16.51144 -15.87752 -15.36835 -15.13232 -14.55106 -14.34828 -14.09781 -13.99575 -13.60530 -13.54580 -12.60625 -12.56991 -12.09945 -11.98589 -11.69364 -11.50807 -11.32100 -11.21921 -11.08960 -10.91098 -10.65452 -10.44247 -10.06366 -9.86182 -9.69660 -9.45262 -9.23712 -9.16958 -8.90348 -7.54940 -7.40801 -7.35454 -6.85034 -4.41934 -0.07963 1.22570 1.39471 1.86442 2.07832 2.39052 2.85990 3.03535 3.05710 3.10292 3.21543 3.35234 3.61892 3.72542 3.87795 3.90155 4.47883 4.49515 4.57745 4.90630 5.37356 5.63807 5.68865 5.75374 5.79324 6.29925 6.30878 6.37687 6.48651 6.80391 6.90851 6.95109 6.99476 7.15282 7.20596 7.28639 7.54666 7.77246 7.96583 7.98759 8.03222 8.21623 8.56455 8.80798 8.89129 10.08442 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.035065 B = 0.002211 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.329136 B =12663.235631 C =12937.348288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.452 4.452 8 H 0.081 0.919 9 C 0.118 3.882 10 C -0.168 4.168 11 C -0.077 4.077 12 C -0.220 4.220 13 C -0.025 4.025 14 S 0.010 5.990 15 C 0.365 3.635 16 N -0.507 5.507 17 C 0.319 3.681 18 N -0.294 5.294 19 N -0.415 5.415 20 H 0.450 0.550 21 C 0.153 3.847 22 C -0.349 4.349 23 C 0.487 3.513 24 O -0.474 6.474 25 N -0.568 5.568 26 C -0.065 4.065 27 C -0.227 4.227 28 H 0.282 0.718 29 H 0.120 0.880 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.200 0.800 34 H 0.413 0.587 35 H 0.091 0.909 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.375 -20.381 -3.736 22.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.144 4.144 3 Si 0.733 3.267 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.482 4.482 8 H 0.099 0.901 9 C 0.114 3.886 10 C -0.187 4.187 11 C -0.097 4.097 12 C -0.225 4.225 13 C -0.172 4.172 14 S 0.251 5.749 15 C -0.015 4.015 16 N -0.235 5.235 17 C 0.048 3.952 18 N -0.127 5.127 19 N -0.115 5.115 20 H 0.296 0.704 21 C -0.012 4.012 22 C -0.368 4.368 23 C 0.276 3.724 24 O -0.282 6.282 25 N -0.298 5.298 26 C -0.085 4.085 27 C -0.248 4.248 28 H 0.093 0.907 29 H 0.137 0.863 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.216 0.784 34 H 0.274 0.726 35 H 0.109 0.891 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.819 -19.141 -5.941 21.170 hybrid contribution -1.703 -1.032 1.499 2.492 sum -8.522 -20.172 -4.442 22.345 Atomic orbital electron populations 1.69831 1.07673 1.29434 1.33970 1.25978 0.94768 1.01562 0.92138 0.86241 0.81061 0.80718 0.78651 1.18264 1.19569 1.19926 1.19723 0.98206 0.91208 1.39056 0.90109 1.17698 0.90867 0.92099 0.87922 1.21305 0.99339 0.96786 1.01308 1.20559 0.98178 0.92438 0.98528 1.18446 1.02476 0.91216 1.10341 1.22274 1.01592 0.98745 0.94594 1.86735 1.41132 1.13773 1.33222 1.25334 0.91839 0.98448 0.85858 1.68531 1.29368 1.04496 1.21088 1.21420 0.90694 0.92407 0.90654 1.77756 1.10628 1.02906 1.21397 1.46576 1.24873 1.21620 1.18439 0.70401 1.22711 0.96047 0.94458 0.87966 1.21206 1.08157 1.01868 1.05536 1.18937 0.82391 0.85646 0.85439 1.84584 1.33001 1.74874 1.35752 1.68212 1.08577 1.20950 1.32058 1.20396 0.94518 0.96703 0.96901 1.20958 1.03792 0.92745 1.07256 0.90682 0.86259 0.89103 0.89625 0.89515 0.78374 0.72594 0.89103 0.88712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.69 10.95 55.55 0.61 -19.08 16 2 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 3 Si 0.91 18.14 29.59 -169.99 -5.03 13.11 16 4 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 5 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 6 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 7 C -0.45 -11.65 9.06 -37.74 -0.34 -11.99 16 8 H 0.08 2.00 7.91 -52.49 -0.41 1.58 16 9 C 0.12 3.05 5.57 -106.83 -0.60 2.46 16 10 C -0.17 -4.25 8.70 -38.87 -0.34 -4.59 16 11 C -0.08 -1.76 9.67 -39.66 -0.38 -2.14 16 12 C -0.22 -4.67 5.16 -104.33 -0.54 -5.21 16 13 C -0.02 -0.45 4.88 36.01 0.18 -0.28 16 14 S 0.01 0.19 22.20 -107.50 -2.39 -2.20 16 15 C 0.37 6.35 7.83 -91.03 -0.71 5.64 16 16 N -0.51 -9.13 10.46 -11.82 -0.12 -9.25 16 17 C 0.32 4.92 8.67 -156.42 -1.36 3.56 16 18 N -0.29 -3.92 12.67 31.98 0.41 -3.51 16 19 N -0.42 -2.88 7.18 30.75 0.22 -2.66 16 20 H 0.45 1.03 8.96 -182.68 -1.64 -0.60 16 21 C 0.15 0.95 12.06 -16.78 -0.20 0.75 16 22 C -0.35 -4.01 6.35 -105.04 -0.67 -4.68 16 23 C 0.49 5.98 7.93 -16.12 -0.13 5.85 16 24 O -0.47 -4.05 13.58 -17.34 -0.24 -4.28 16 25 N -0.57 -8.87 8.93 -13.16 -0.12 -8.99 16 26 C -0.06 -1.41 9.67 -39.66 -0.38 -1.79 16 27 C -0.23 -5.42 9.80 -38.87 -0.38 -5.80 16 28 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 29 H 0.12 3.12 6.16 -52.49 -0.32 2.80 16 30 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 31 H 0.09 1.47 8.02 -51.92 -0.42 1.05 16 32 H 0.09 1.56 8.03 -51.91 -0.42 1.14 16 33 H 0.20 0.15 8.06 -52.48 -0.42 -0.27 16 34 H 0.41 1.24 9.06 45.56 0.41 1.65 16 35 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 336.04 15.07 5.06 5.06 Total: -1.00 -33.86 336.04 -11.16 -45.02 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -3.62 Total: 3.28 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -5.94 Total: -16.50 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: 0.99 Total: -43.49 kcal Atomic # 8 Polarization: -4.05 SS G_CDS: -0.24 Total: -4.28 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.11 kcal Atomic # 16 Polarization: 0.19 SS G_CDS: -2.39 Total: -2.20 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.86 -11.16 -45.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342480059.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.034 kcal (2) G-P(sol) polarization free energy of solvation -33.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds