Wall clock time and date at job start Tue Mar 31 2020 15:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86800 * 120.00254 * 2 1 4 4 H 1.48499 * 109.47128 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46931 * 299.99614 * 3 2 1 6 6 H 1.48490 * 109.47155 * 59.99256 * 3 2 1 7 7 C 1.39950 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00011 * 197.72795 * 7 2 1 9 9 C 1.41400 * 119.99509 * 17.72383 * 7 2 1 10 10 C 1.40707 * 120.24843 * 24.53120 * 9 7 2 11 11 C 1.37623 * 119.74849 * 180.22492 * 10 9 7 12 12 C 1.38630 * 120.24117 * 359.52215 * 11 10 9 13 13 C 1.50700 * 119.74498 * 180.22751 * 12 11 10 14 14 S 1.81005 * 109.47059 * 90.00315 * 13 12 11 15 15 C 1.76204 * 100.00042 * 180.02562 * 14 13 12 16 16 N 1.31714 * 118.21742 * 180.02562 * 15 14 13 17 17 C 1.34733 * 120.26653 * 179.97438 * 16 15 14 18 18 N 1.31523 * 135.44175 * 179.97438 * 17 16 15 19 19 N 1.39988 * 109.05574 * 179.97438 * 18 17 16 20 20 H 0.97003 * 125.03203 * 180.02562 * 19 18 17 21 21 C 1.33911 * 109.93789 * 0.02562 * 19 18 17 22 22 C 1.37862 * 107.82794 * 359.97438 * 21 19 18 23 23 C 1.41648 * 135.71625 * 180.02562 * 22 21 19 24 24 O 1.35215 * 120.84869 * 0.02562 * 23 22 21 25 25 N 1.32143 * 118.30392 * 179.75691 * 23 22 21 26 26 C 1.38629 * 120.50679 * 0.25281 * 12 11 10 27 27 C 1.37618 * 120.24753 * 359.97438 * 26 12 11 28 28 H 0.97005 * 119.99803 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.12916 * 0.02562 * 10 9 7 30 30 H 1.08001 * 119.87639 * 179.79220 * 11 10 9 31 31 H 1.09000 * 109.47339 * 210.00089 * 13 12 11 32 32 H 1.09003 * 109.47470 * 330.00527 * 13 12 11 33 33 H 1.08004 * 126.07967 * 179.97438 * 21 19 18 34 34 H 0.96691 * 114.00082 * 89.99768 * 24 23 22 35 35 H 1.08002 * 119.88011 * 179.97438 * 26 12 11 36 36 H 1.08002 * 120.12831 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8836 2.3963 -1.2126 6 1 1.8835 2.3964 1.2123 7 6 2.0080 -1.2120 0.0005 8 1 3.0494 -1.2341 0.2853 9 6 1.3512 -2.4076 -0.3717 10 6 0.2202 -2.3643 -1.2076 11 6 -0.4139 -3.5339 -1.5598 12 6 0.0638 -4.7522 -1.1021 13 6 -0.6361 -6.0265 -1.4988 14 16 0.0871 -6.6598 -3.0325 15 6 -0.8912 -8.1081 -3.2569 16 7 -0.6521 -8.8643 -4.3084 17 6 -1.3749 -9.9815 -4.5199 18 7 -1.3951 -10.9252 -5.4357 19 7 -2.3930 -11.8529 -5.1141 20 1 -2.6070 -12.6433 -5.6341 21 6 -3.0083 -11.4877 -3.9822 22 6 -2.4255 -10.3179 -3.5435 23 6 -2.6084 -9.4442 -2.4437 24 8 -3.5541 -9.6935 -1.5099 25 7 -1.8276 -8.3822 -2.3505 26 6 1.1801 -4.8072 -0.2819 27 6 1.8272 -3.6499 0.0867 28 1 -0.4850 0.8401 -0.0004 29 1 -0.1510 -1.4166 -1.5689 30 1 -1.2842 -3.5028 -2.1985 31 1 -0.5176 -6.7674 -0.7082 32 1 -1.6964 -5.8259 -1.6529 33 1 -3.8172 -12.0157 -3.4991 34 1 -3.2436 -10.2330 -0.7700 35 1 1.5433 -5.7618 0.0691 36 1 2.6969 -3.6951 0.7254 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342480059.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:10 Heat of formation + Delta-G solvation = 71.118290 kcal Electronic energy + Delta-G solvation = -23076.082633 eV Core-core repulsion = 19459.285694 eV Total energy + Delta-G solvation = -3616.796939 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.84234 -40.25290 -39.47521 -38.51773 -35.85474 -34.24947 -33.00149 -32.15357 -31.49958 -31.18106 -29.32841 -26.93750 -25.56050 -24.51931 -22.89514 -22.47851 -21.93157 -20.48468 -19.64388 -19.22377 -18.83772 -17.72583 -17.34374 -17.14198 -16.83123 -16.08164 -15.95431 -15.68629 -15.62635 -15.37317 -14.96755 -14.71099 -14.27748 -13.81752 -13.64317 -13.42530 -13.35596 -12.86829 -12.72179 -12.56164 -12.33306 -12.24425 -12.11179 -11.93725 -11.51633 -11.35545 -11.27752 -10.97488 -10.76692 -10.28819 -9.84506 -9.36850 -9.19991 -8.75500 -8.65163 -6.33147 -0.91444 0.06448 0.26131 0.87710 1.07358 1.16554 1.30253 1.40568 1.46313 1.55444 1.68552 2.21664 2.39498 2.60534 2.75521 2.86987 3.09169 3.58555 3.76524 3.91714 4.16072 4.18758 4.25395 4.54115 4.62220 4.64474 4.82810 4.88495 5.06818 5.15896 5.35949 5.44393 5.70348 5.80867 5.93969 6.03190 6.10512 6.19489 6.19648 6.36815 6.52975 6.69162 6.90522 6.92907 7.01968 8.31232 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.035065 B = 0.002211 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.329136 B =12663.235631 C =12937.348288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.035 3.965 3 Si 0.983 3.017 4 H -0.258 1.258 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.492 4.492 8 H 0.078 0.922 9 C 0.086 3.914 10 C -0.191 4.191 11 C -0.082 4.082 12 C -0.208 4.208 13 C -0.009 4.009 14 S -0.017 6.017 15 C 0.365 3.635 16 N -0.546 5.546 17 C 0.282 3.718 18 N -0.334 5.334 19 N -0.392 5.392 20 H 0.472 0.528 21 C 0.208 3.792 22 C -0.370 4.370 23 C 0.500 3.500 24 O -0.466 6.466 25 N -0.601 5.601 26 C -0.066 4.066 27 C -0.242 4.242 28 H 0.290 0.710 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.268 0.732 34 H 0.438 0.562 35 H 0.120 0.880 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.461 -23.766 -3.623 26.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.181 4.181 3 Si 0.803 3.197 4 H -0.181 1.181 5 H -0.190 1.190 6 H -0.189 1.189 7 C -0.521 4.521 8 H 0.096 0.904 9 C 0.083 3.917 10 C -0.211 4.211 11 C -0.102 4.102 12 C -0.212 4.212 13 C -0.156 4.156 14 S 0.222 5.778 15 C -0.017 4.017 16 N -0.275 5.275 17 C 0.012 3.988 18 N -0.167 5.167 19 N -0.094 5.094 20 H 0.323 0.677 21 C 0.042 3.958 22 C -0.388 4.388 23 C 0.292 3.708 24 O -0.278 6.278 25 N -0.334 5.334 26 C -0.086 4.086 27 C -0.262 4.262 28 H 0.100 0.900 29 H 0.120 0.880 30 H 0.123 0.877 31 H 0.117 0.883 32 H 0.107 0.893 33 H 0.284 0.716 34 H 0.305 0.695 35 H 0.138 0.862 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.935 -22.601 -5.814 24.989 hybrid contribution -1.309 -0.499 1.346 1.943 sum -10.244 -23.100 -4.468 25.662 Atomic orbital electron populations 1.69878 1.09032 1.30687 1.34815 1.26800 0.95513 1.04630 0.91182 0.85150 0.79468 0.76115 0.78953 1.18119 1.18967 1.18930 1.19933 0.98411 0.92424 1.41334 0.90356 1.18034 0.91657 0.93230 0.88789 1.21262 1.00301 0.97003 1.02542 1.20768 0.98494 0.92427 0.98547 1.18736 1.01721 0.92049 1.08701 1.22048 1.01121 0.97317 0.95146 1.86603 1.42282 1.15854 1.33088 1.24762 0.92471 0.97900 0.86564 1.68284 1.31124 1.06191 1.21871 1.21539 0.92205 0.92432 0.92576 1.77639 1.13146 1.03816 1.22094 1.46585 1.23014 1.21075 1.18743 0.67655 1.23688 0.94677 0.91645 0.85808 1.21427 1.08316 1.03886 1.05168 1.19027 0.81241 0.84483 0.86004 1.84554 1.31590 1.75459 1.36230 1.68147 1.09915 1.23186 1.32111 1.20702 0.94217 0.97270 0.96383 1.21170 1.04429 0.92923 1.07675 0.89972 0.87978 0.87681 0.88288 0.89330 0.71609 0.69537 0.86184 0.87990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.75 10.95 21.83 0.24 -42.51 16 2 C 0.03 1.74 5.14 85.26 0.44 2.18 16 3 Si 0.98 38.18 29.59 68.60 2.03 40.21 16 4 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 5 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 6 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 7 C -0.49 -26.54 9.06 23.46 0.21 -26.32 16 8 H 0.08 4.07 7.91 -2.91 -0.02 4.05 16 9 C 0.09 4.67 5.57 -21.29 -0.12 4.55 16 10 C -0.19 -10.18 8.70 22.73 0.20 -9.98 16 11 C -0.08 -3.87 9.67 22.22 0.21 -3.65 16 12 C -0.21 -8.89 5.16 -19.68 -0.10 -8.99 16 13 C -0.01 -0.32 4.88 71.24 0.35 0.03 16 14 S -0.02 -0.63 22.20 -56.49 -1.25 -1.89 16 15 C 0.36 12.73 7.83 180.49 1.41 14.15 16 16 N -0.55 -19.93 10.46 -191.31 -2.00 -21.93 16 17 C 0.28 8.42 8.67 136.90 1.19 9.60 16 18 N -0.33 -8.32 12.67 -52.74 -0.67 -8.99 16 19 N -0.39 -3.73 7.18 -56.63 -0.41 -4.13 16 20 H 0.47 -0.15 8.96 -213.39 -1.91 -2.06 16 21 C 0.21 1.36 12.06 84.29 1.02 2.37 16 22 C -0.37 -7.27 6.35 -20.14 -0.13 -7.40 16 23 C 0.50 10.90 7.93 85.49 0.68 11.57 16 24 O -0.47 -6.01 13.58 -84.97 -1.15 -7.16 16 25 N -0.60 -18.11 8.93 -308.71 -2.76 -20.86 16 26 C -0.07 -2.86 9.67 22.22 0.21 -2.65 16 27 C -0.24 -11.88 9.80 22.73 0.22 -11.65 16 28 H 0.29 13.58 8.30 -92.70 -0.77 12.81 16 29 H 0.10 5.68 6.16 -2.91 -0.02 5.67 16 30 H 0.11 4.52 8.06 -2.91 -0.02 4.49 16 31 H 0.10 3.27 8.02 -2.39 -0.02 3.25 16 32 H 0.09 3.14 8.03 -2.39 -0.02 3.12 16 33 H 0.27 -1.99 8.06 -2.91 -0.02 -2.02 16 34 H 0.44 0.59 9.06 -74.06 -0.67 -0.08 16 35 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 36 H 0.10 4.70 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -80.96 336.04 -1.58 -82.54 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -1.41 Total: 10.91 kcal Atomic # 6 Polarization: -31.98 SS G_CDS: 5.79 Total: -26.19 kcal Atomic # 7 Polarization: -92.82 SS G_CDS: -5.60 Total: -98.42 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: -1.15 Total: -7.16 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 2.03 Total: 40.21 kcal Atomic # 16 Polarization: -0.63 SS G_CDS: -1.25 Total: -1.89 kcal Total: -80.96 -1.58 -82.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342480059.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.662 kcal (2) G-P(sol) polarization free energy of solvation -80.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds