Wall clock time and date at job start Tue Mar 31 2020 15:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46491 * 120.00431 * 2 1 4 4 C 1.50705 * 109.47023 * 275.00192 * 3 2 1 5 5 H 1.07996 * 119.99859 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00122 * 179.97438 * 4 3 2 7 7 N 1.31523 * 119.99845 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00223 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47103 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47186 * 119.99994 * 8 6 4 11 11 H 1.48499 * 109.47365 * 240.00140 * 8 6 4 12 12 S 1.65608 * 119.99660 * 180.02562 * 2 1 3 13 13 O 1.42098 * 106.39879 * 156.45851 * 12 2 1 14 14 O 1.42095 * 106.40213 * 23.53616 * 12 2 1 15 15 N 1.65602 * 107.21496 * 269.99786 * 12 2 1 16 16 C 1.46503 * 119.99981 * 65.00501 * 15 12 2 17 17 H 1.09002 * 109.26238 * 24.29404 * 16 15 12 18 18 C 1.54138 * 109.26870 * 264.78714 * 16 15 12 19 19 S 1.83291 * 101.08818 * 211.63383 * 18 16 15 20 20 C 1.77439 * 96.59876 * 24.88139 * 19 18 16 21 21 C 1.38813 * 130.57197 * 164.56643 * 20 19 18 22 22 C 1.38024 * 120.16328 * 180.20598 * 21 20 19 23 23 C 1.38321 * 119.28839 * 0.02562 * 22 21 20 24 24 C 1.37701 * 120.54491 * 359.87905 * 23 22 21 25 25 C 1.38881 * 108.27250 * 344.56524 * 20 19 18 26 26 H 1.09000 * 109.47281 * 270.00163 * 1 2 3 27 27 H 1.08995 * 109.47007 * 29.99796 * 1 2 3 28 28 H 1.08997 * 109.47461 * 150.00419 * 1 2 3 29 29 H 1.09003 * 109.46846 * 34.99775 * 3 2 1 30 30 H 1.08998 * 109.47387 * 155.00015 * 3 2 1 31 31 H 0.97000 * 120.00085 * 180.02562 * 7 6 4 32 32 H 0.96996 * 119.99832 * 244.99904 * 15 12 2 33 33 H 1.09000 * 111.09746 * 329.59473 * 18 16 15 34 34 H 1.09005 * 111.09551 * 93.63748 * 18 16 15 35 35 H 1.08006 * 119.92037 * 0.23002 * 21 20 19 36 36 H 1.07999 * 120.35758 * 180.02562 * 22 21 20 37 37 H 1.07999 * 119.72711 * 179.89873 * 23 22 21 38 38 H 1.07997 * 119.47368 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.3415 1.7655 -1.4155 5 1 1.9289 1.1934 -2.2332 6 6 2.9998 2.9507 -1.6664 7 7 3.5018 3.6477 -0.6705 8 14 3.1788 3.5663 -3.4209 9 1 2.5312 2.6065 -4.3508 10 1 2.5272 4.8946 -3.5484 11 1 4.6199 3.6875 -3.7584 12 16 2.2930 -1.4343 -0.0006 13 8 3.5758 -1.1567 -0.5450 14 8 1.4112 -2.4063 -0.5454 15 7 2.5380 -1.8594 1.5810 16 6 1.3945 -2.1789 2.4393 17 1 0.5593 -2.5042 1.8191 18 6 0.9828 -0.9200 3.2276 19 16 0.3550 -1.6658 4.7798 20 6 1.2931 -3.1685 4.6780 21 6 1.5670 -4.1289 5.6421 22 6 2.3363 -5.2301 5.3251 23 6 2.8294 -5.3637 4.0397 24 6 2.5560 -4.4120 3.0828 25 6 1.7777 -3.2924 3.3824 26 1 -0.3634 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8900 -0.5137 29 1 1.6502 2.0042 0.5894 30 1 3.1858 1.1175 0.4343 31 1 3.9647 4.4817 -0.8470 32 1 3.4387 -1.8969 1.9391 33 1 1.8430 -0.2789 3.4201 34 1 0.1963 -0.3720 2.7087 35 1 1.1768 -4.0144 6.6427 36 1 2.5510 -5.9795 6.0726 37 1 3.4335 -6.2218 3.7843 38 1 2.9495 -4.5338 2.0845 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344570345.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:43 Heat of formation + Delta-G solvation = -62.172947 kcal Electronic energy + Delta-G solvation = -23942.484828 eV Core-core repulsion = 20423.059147 eV Total energy + Delta-G solvation = -3519.425681 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.56753 -38.38772 -37.45582 -37.12263 -36.92350 -34.51147 -32.70927 -31.70531 -30.16974 -29.61420 -26.80228 -25.00911 -24.23755 -23.75354 -22.20365 -20.64929 -19.19621 -18.93165 -18.43884 -18.16844 -17.52812 -16.85949 -16.47255 -16.26313 -16.18948 -15.80985 -15.32205 -15.04954 -14.95423 -14.57624 -14.16649 -14.05892 -13.96210 -13.65312 -13.37299 -13.29615 -13.20847 -13.09557 -12.99845 -12.94070 -12.66221 -12.48898 -12.41242 -12.07876 -11.97647 -11.72710 -11.47637 -10.86028 -10.68275 -10.59412 -9.87367 -9.80325 -8.48820 -8.21007 -6.32178 -0.45365 0.10710 0.29912 0.51515 1.13078 1.38201 1.40967 1.52053 1.96410 2.39506 2.54630 2.66887 3.10522 3.16438 3.33465 3.50778 3.79287 3.89744 4.03319 4.14236 4.16025 4.35257 4.42649 4.51305 4.69866 4.72415 4.79647 4.85140 4.97004 5.09546 5.20747 5.22860 5.38593 5.44593 5.50609 5.68325 5.78853 5.90060 5.98605 6.10918 6.76510 7.36873 8.86508 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.022660 B = 0.003632 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.356426 B = 7707.331690 C = 8211.686309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.998 5.998 3 C 0.273 3.727 4 C -0.549 4.549 5 H 0.052 0.948 6 C 0.013 3.987 7 N -0.923 5.923 8 Si 0.954 3.046 9 H -0.270 1.270 10 H -0.271 1.271 11 H -0.281 1.281 12 S 2.797 3.203 13 O -1.005 7.005 14 O -1.005 7.005 15 N -1.108 6.108 16 C 0.193 3.807 17 H 0.115 0.885 18 C -0.107 4.107 19 S -0.144 6.144 20 C -0.087 4.087 21 C -0.096 4.096 22 C -0.090 4.090 23 C -0.121 4.121 24 C -0.095 4.095 25 C -0.129 4.129 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.033 0.967 30 H 0.018 0.982 31 H 0.267 0.733 32 H 0.424 0.576 33 H 0.109 0.891 34 H 0.134 0.866 35 H 0.145 0.855 36 H 0.166 0.834 37 H 0.154 0.846 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.349 -15.841 14.191 21.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.840 5.840 3 C 0.150 3.850 4 C -0.588 4.588 5 H 0.070 0.930 6 C -0.186 4.186 7 N -0.563 5.563 8 Si 0.779 3.221 9 H -0.195 1.195 10 H -0.196 1.196 11 H -0.206 1.206 12 S 2.805 3.195 13 O -0.989 6.989 14 O -0.988 6.988 15 N -0.869 5.869 16 C 0.085 3.915 17 H 0.133 0.867 18 C -0.257 4.257 19 S 0.098 5.902 20 C -0.200 4.200 21 C -0.120 4.120 22 C -0.109 4.109 23 C -0.140 4.140 24 C -0.115 4.115 25 C -0.136 4.136 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.051 0.949 30 H 0.036 0.964 31 H 0.076 0.924 32 H 0.259 0.741 33 H 0.128 0.872 34 H 0.152 0.848 35 H 0.163 0.837 36 H 0.183 0.817 37 H 0.172 0.828 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.073 -15.582 14.194 21.936 hybrid contribution 1.443 0.544 -1.480 2.137 sum -4.631 -15.038 12.715 20.230 Atomic orbital electron populations 1.21701 0.78072 1.04009 1.02515 1.57436 1.15662 1.21813 1.89128 1.18623 0.90485 0.80114 0.95815 1.21884 1.36086 1.06529 0.94345 0.92999 1.25704 0.94881 0.96836 1.01221 1.70007 1.37959 1.15709 1.32595 0.85570 0.77962 0.78419 0.80146 1.19461 1.19573 1.20637 1.01292 0.72268 0.72614 0.73299 1.93592 1.42838 1.85369 1.77085 1.93518 1.67606 1.60204 1.77458 1.56008 1.15099 1.85067 1.30678 1.20202 0.88871 0.90830 0.91611 0.86729 1.25141 1.06223 0.99708 0.94585 1.86100 1.54690 1.16294 1.33152 1.22186 1.01938 0.99589 0.96303 1.20769 0.99220 0.93402 0.98578 1.21554 0.95283 0.96988 0.97115 1.21368 1.00259 0.99233 0.93180 1.21061 0.96905 0.92824 1.00695 1.20746 1.02198 0.97474 0.93211 0.90808 0.90661 0.90556 0.94862 0.96438 0.92417 0.74086 0.87229 0.84777 0.83731 0.81680 0.82836 0.85815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.52 10.68 127.77 1.36 3.89 16 2 N -1.00 -38.64 3.23 -543.25 -1.75 -40.39 16 3 C 0.27 13.25 5.08 85.64 0.43 13.68 16 4 C -0.55 -30.46 9.38 25.60 0.24 -30.22 16 5 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 6 C 0.01 0.74 5.46 84.65 0.46 1.20 16 7 N -0.92 -53.30 13.29 21.45 0.28 -53.01 16 8 Si 0.95 44.26 29.54 68.60 2.03 46.28 16 9 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 12 S 2.80 105.19 6.08 -56.49 -0.34 104.85 16 13 O -1.00 -47.28 17.11 -128.00 -2.19 -49.47 16 14 O -1.00 -39.25 16.07 -128.00 -2.06 -41.31 16 15 N -1.11 -31.01 5.25 -170.67 -0.90 -31.91 16 16 C 0.19 4.76 3.23 44.68 0.14 4.90 16 17 H 0.12 2.82 7.48 -2.39 -0.02 2.80 16 18 C -0.11 -2.46 7.23 72.37 0.52 -1.93 16 19 S -0.14 -3.21 23.08 -56.49 -1.30 -4.51 16 20 C -0.09 -1.90 6.48 22.56 0.15 -1.76 16 21 C -0.10 -1.64 10.05 22.36 0.22 -1.41 16 22 C -0.09 -1.20 10.08 22.24 0.22 -0.98 16 23 C -0.12 -1.85 10.00 22.16 0.22 -1.62 16 24 C -0.09 -1.96 9.69 22.47 0.22 -1.74 16 25 C -0.13 -3.00 5.63 -19.33 -0.11 -3.11 16 26 H 0.07 1.72 5.92 -2.39 -0.01 1.70 16 27 H 0.07 2.41 8.07 -2.39 -0.02 2.39 16 28 H 0.08 2.22 7.02 -2.39 -0.02 2.20 16 29 H 0.03 1.62 8.11 -2.39 -0.02 1.60 16 30 H 0.02 0.92 7.61 -2.39 -0.02 0.90 16 31 H 0.27 14.51 8.31 -92.71 -0.77 13.73 16 32 H 0.42 10.75 8.83 -96.75 -0.85 9.89 16 33 H 0.11 2.61 8.10 -2.39 -0.02 2.59 16 34 H 0.13 2.78 5.92 -2.38 -0.01 2.76 16 35 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 36 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16 37 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 38 H 0.12 2.53 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -71.31 343.35 -1.90 -73.21 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 0.24 Total: 15.36 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: 4.10 Total: -19.09 kcal Atomic # 7 Polarization: -122.95 SS G_CDS: -2.36 Total: -125.31 kcal Atomic # 8 Polarization: -86.53 SS G_CDS: -4.25 Total: -90.78 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Atomic # 16 Polarization: 101.98 SS G_CDS: -1.65 Total: 100.34 kcal Total: -71.31 -1.90 -73.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344570345.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.035 kcal (2) G-P(sol) polarization free energy of solvation -71.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds