Wall clock time and date at job start Tue Mar 31 2020 15:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46494 * 120.00262 * 2 1 4 4 C 1.50697 * 109.47275 * 279.93975 * 3 2 1 5 5 H 1.08001 * 120.00216 * 355.79351 * 4 3 2 6 6 C 1.37882 * 120.00407 * 175.78341 * 4 3 2 7 7 N 1.31514 * 120.00031 * 180.02562 * 6 4 3 8 8 Si 1.86803 * 119.99523 * 0.02562 * 6 4 3 9 9 H 1.48491 * 109.47210 * 90.00067 * 8 6 4 10 10 H 1.48510 * 109.46591 * 209.99999 * 8 6 4 11 11 H 1.48500 * 109.47065 * 329.99310 * 8 6 4 12 12 S 1.65599 * 119.99717 * 179.97438 * 2 1 3 13 13 O 1.42102 * 106.40525 * 196.97789 * 12 2 1 14 14 O 1.42101 * 106.40482 * 329.90232 * 12 2 1 15 15 N 1.65605 * 107.21608 * 83.43780 * 12 2 1 16 16 C 1.46501 * 119.99800 * 66.58590 * 15 12 2 17 17 H 1.09004 * 109.26065 * 335.18180 * 16 15 12 18 18 C 1.54129 * 109.27519 * 94.69572 * 16 15 12 19 19 S 1.83295 * 101.09213 * 92.13231 * 18 16 15 20 20 C 1.77440 * 96.59521 * 24.88073 * 19 18 16 21 21 C 1.38816 * 130.56815 * 164.57228 * 20 19 18 22 22 C 1.38032 * 120.15839 * 180.20436 * 21 20 19 23 23 C 1.38324 * 119.28913 * 0.02562 * 22 21 20 24 24 C 1.37699 * 120.54559 * 359.88012 * 23 22 21 25 25 C 1.38881 * 108.27694 * 344.56691 * 20 19 18 26 26 H 1.09000 * 109.47231 * 270.00484 * 1 2 3 27 27 H 1.09001 * 109.46755 * 29.99819 * 1 2 3 28 28 H 1.08997 * 109.47429 * 149.99988 * 1 2 3 29 29 H 1.09002 * 109.47580 * 39.94376 * 3 2 1 30 30 H 1.09003 * 109.46994 * 159.94239 * 3 2 1 31 31 H 0.97004 * 119.99558 * 180.02562 * 7 6 4 32 32 H 0.97002 * 120.00373 * 246.57924 * 15 12 2 33 33 H 1.09000 * 111.09905 * 210.09170 * 18 16 15 34 34 H 1.09004 * 111.09509 * 334.13475 * 18 16 15 35 35 H 1.08001 * 119.92437 * 0.22847 * 21 20 19 36 36 H 1.07998 * 120.35618 * 180.02562 * 22 21 20 37 37 H 1.07999 * 119.72322 * 179.85255 * 23 22 21 38 38 H 1.07995 * 119.47003 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.2363 1.8263 -1.3994 5 1 1.8225 1.2576 -2.2191 6 6 2.7999 3.0627 -1.6336 7 7 2.8333 3.5496 -2.8548 8 14 3.5161 4.0462 -0.2160 9 1 4.9503 3.7001 -0.0482 10 1 3.3874 5.4971 -0.5055 11 1 2.7795 3.7233 1.0324 12 16 2.2929 -1.4342 0.0006 13 8 3.6227 -1.1298 0.3986 14 8 1.4722 -2.3711 0.6847 15 7 2.3814 -1.9498 -1.5706 16 6 3.1667 -1.1911 -2.5473 17 1 3.2423 -0.1540 -2.2203 18 6 4.5801 -1.7979 -2.6454 19 16 4.3574 -2.9900 -4.0198 20 6 2.9921 -2.1594 -4.7909 21 6 2.4425 -2.3093 -6.0567 22 6 1.3663 -1.5354 -6.4416 23 6 0.8449 -0.6120 -5.5535 24 6 1.3889 -0.4647 -4.2971 25 6 2.4756 -1.2396 -3.8876 26 1 -0.3634 0.0001 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8899 -0.5138 29 1 1.6969 1.9773 0.6598 30 1 3.2152 1.1006 0.3525 31 1 3.2302 4.4192 -3.0195 32 1 1.9134 -2.7541 -1.8443 33 1 5.3170 -1.0368 -2.9017 34 1 4.8525 -2.3091 -1.7220 35 1 2.8577 -3.0334 -6.7421 36 1 0.9360 -1.6497 -7.4255 37 1 0.0044 -0.0011 -5.8481 38 1 0.9679 0.2613 -3.6175 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344570346.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:47 Heat of formation + Delta-G solvation = -38.284518 kcal Electronic energy + Delta-G solvation = -24802.109594 eV Core-core repulsion = 21283.719793 eV Total energy + Delta-G solvation = -3518.389801 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.30980 -36.88857 -36.01595 -35.69338 -35.39942 -32.57714 -31.23325 -30.59262 -28.80431 -28.49245 -25.32025 -23.71797 -22.65510 -21.99993 -20.90947 -19.04428 -17.77702 -17.60918 -16.88408 -16.73943 -16.31122 -15.34697 -15.17232 -14.90981 -14.59877 -14.37398 -13.87115 -13.58274 -13.28266 -13.16500 -12.86208 -12.63100 -12.55170 -12.32583 -12.19832 -11.90728 -11.80832 -11.61614 -11.53700 -11.43136 -11.30690 -10.84473 -10.73611 -10.54087 -10.28367 -10.09945 -9.67931 -9.62754 -9.25484 -8.77342 -8.65616 -8.22751 -7.28700 -6.28886 -4.31395 0.99732 1.36221 1.53593 1.77137 2.41033 3.18529 3.25115 3.29151 3.32912 3.86406 4.01650 4.24454 4.54585 4.82758 4.88499 5.02885 5.07073 5.23378 5.33551 5.40463 5.48854 5.59863 5.68982 5.81812 5.94721 5.97420 6.11058 6.17396 6.24066 6.38669 6.42632 6.57666 6.71656 6.75251 6.99755 7.07001 7.10693 7.32518 7.43423 8.26039 8.70306 9.31165 10.81507 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.011084 B = 0.006387 C = 0.005175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.511652 B = 4382.768325 C = 5408.973332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.991 5.991 3 C 0.207 3.793 4 C -0.554 4.554 5 H 0.087 0.913 6 C 0.082 3.918 7 N -0.885 5.885 8 Si 0.868 3.132 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.263 1.263 12 S 2.785 3.215 13 O -0.977 6.977 14 O -0.993 6.993 15 N -1.115 6.115 16 C 0.180 3.820 17 H 0.147 0.853 18 C -0.091 4.091 19 S -0.166 6.166 20 C -0.069 4.069 21 C -0.100 4.100 22 C -0.100 4.100 23 C -0.124 4.124 24 C -0.059 4.059 25 C -0.102 4.102 26 H 0.046 0.954 27 H 0.078 0.922 28 H 0.054 0.946 29 H 0.038 0.962 30 H 0.047 0.953 31 H 0.267 0.733 32 H 0.411 0.589 33 H 0.111 0.889 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.810 -8.776 -3.651 9.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.833 5.833 3 C 0.084 3.916 4 C -0.593 4.593 5 H 0.105 0.895 6 C -0.123 4.123 7 N -0.521 5.521 8 Si 0.694 3.306 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.188 1.188 12 S 2.793 3.207 13 O -0.961 6.961 14 O -0.978 6.978 15 N -0.871 5.871 16 C 0.072 3.928 17 H 0.164 0.836 18 C -0.241 4.241 19 S 0.075 5.925 20 C -0.182 4.182 21 C -0.124 4.124 22 C -0.120 4.120 23 C -0.144 4.144 24 C -0.079 4.079 25 C -0.109 4.109 26 H 0.065 0.935 27 H 0.097 0.903 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.244 0.756 33 H 0.129 0.871 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.145 0.855 37 H 0.144 0.856 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.549 -9.984 -3.093 10.566 hybrid contribution -0.636 1.709 0.266 1.843 sum -2.185 -8.275 -2.827 9.013 Atomic orbital electron populations 1.21251 0.79414 1.02582 1.00821 1.57392 1.14623 1.22469 1.88796 1.19701 0.92305 0.80941 0.98668 1.21490 1.40957 1.04029 0.92797 0.89487 1.24841 0.94909 0.97127 0.95458 1.69879 1.43874 1.18757 1.19627 0.86972 0.80540 0.79697 0.83358 1.19688 1.21024 1.18763 1.01839 0.73521 0.72536 0.72843 1.93577 1.36852 1.84586 1.81063 1.93573 1.70092 1.62555 1.71532 1.56160 1.64069 1.37993 1.28907 1.20234 0.86650 0.99209 0.86746 0.83553 1.24964 1.00304 0.99691 0.99162 1.85837 1.39705 1.35350 1.31604 1.22058 0.99333 0.99592 0.97235 1.20306 0.97487 1.00994 0.93601 1.21073 0.95784 0.95792 0.99393 1.21001 1.00765 0.98896 0.93780 1.21133 0.93804 0.96648 0.96363 1.20747 0.98113 0.98022 0.94003 0.93537 0.90287 0.92734 0.94435 0.93530 0.92313 0.75649 0.87093 0.85963 0.85973 0.85512 0.85640 0.84465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.66 10.28 59.85 0.62 2.27 16 2 N -0.99 -18.43 3.24 -123.06 -0.40 -18.83 16 3 C 0.21 4.45 4.50 -5.20 -0.02 4.43 16 4 C -0.55 -13.16 8.10 -34.44 -0.28 -13.43 16 5 H 0.09 2.10 5.46 -52.49 -0.29 1.81 16 6 C 0.08 2.06 5.47 -17.82 -0.10 1.97 16 7 N -0.88 -23.80 13.96 55.43 0.77 -23.02 16 8 Si 0.87 19.54 27.55 -169.99 -4.68 14.86 16 9 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.26 -5.69 6.42 56.52 0.36 -5.33 16 12 S 2.79 50.76 5.99 -107.50 -0.64 50.11 16 13 O -0.98 -20.17 16.27 -57.17 -0.93 -21.10 16 14 O -0.99 -19.27 17.45 -57.17 -1.00 -20.27 16 15 N -1.11 -17.69 5.46 -5.30 -0.03 -17.72 16 16 C 0.18 3.05 3.03 -68.41 -0.21 2.84 16 17 H 0.15 2.89 5.12 -51.93 -0.27 2.62 16 18 C -0.09 -1.43 7.26 37.75 0.27 -1.16 16 19 S -0.17 -2.48 23.08 -107.50 -2.48 -4.96 16 20 C -0.07 -1.07 6.48 -39.13 -0.25 -1.32 16 21 C -0.10 -1.35 10.05 -39.44 -0.40 -1.75 16 22 C -0.10 -1.25 10.08 -39.63 -0.40 -1.65 16 23 C -0.12 -1.73 10.00 -39.75 -0.40 -2.12 16 24 C -0.06 -0.97 9.90 -39.27 -0.39 -1.36 16 25 C -0.10 -1.69 5.48 -103.79 -0.57 -2.26 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 28 H 0.05 0.75 7.96 -51.93 -0.41 0.34 16 29 H 0.04 0.80 6.90 -51.93 -0.36 0.44 16 30 H 0.05 1.04 6.41 -51.93 -0.33 0.71 16 31 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 32 H 0.41 5.76 8.83 -34.48 -0.30 5.46 16 33 H 0.11 1.67 8.14 -51.93 -0.42 1.25 16 34 H 0.12 1.84 8.06 -51.93 -0.42 1.42 16 35 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 36 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 37 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 38 H 0.14 2.44 6.28 -52.49 -0.33 2.11 16 LS Contribution 336.12 15.07 5.07 5.07 Total: -1.00 -29.10 336.12 -10.86 -39.96 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -4.42 Total: 9.45 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -2.12 Total: -13.54 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: 0.35 Total: -59.58 kcal Atomic # 8 Polarization: -39.44 SS G_CDS: -1.93 Total: -41.36 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -4.68 Total: 14.86 kcal Atomic # 16 Polarization: 48.28 SS G_CDS: -3.13 Total: 45.15 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.10 -10.86 -39.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344570346.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.678 kcal (2) G-P(sol) polarization free energy of solvation -29.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds