Wall clock time and date at job start Tue Mar 31 2020 15:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46494 * 120.00262 * 2 1 4 4 C 1.50697 * 109.47275 * 279.93975 * 3 2 1 5 5 H 1.08001 * 120.00216 * 355.79351 * 4 3 2 6 6 C 1.37882 * 120.00407 * 175.78341 * 4 3 2 7 7 N 1.31514 * 120.00031 * 180.02562 * 6 4 3 8 8 Si 1.86803 * 119.99523 * 0.02562 * 6 4 3 9 9 H 1.48491 * 109.47210 * 90.00067 * 8 6 4 10 10 H 1.48510 * 109.46591 * 209.99999 * 8 6 4 11 11 H 1.48500 * 109.47065 * 329.99310 * 8 6 4 12 12 S 1.65599 * 119.99717 * 179.97438 * 2 1 3 13 13 O 1.42102 * 106.40525 * 196.97789 * 12 2 1 14 14 O 1.42101 * 106.40482 * 329.90232 * 12 2 1 15 15 N 1.65605 * 107.21608 * 83.43780 * 12 2 1 16 16 C 1.46501 * 119.99800 * 66.58590 * 15 12 2 17 17 H 1.09004 * 109.26065 * 335.18180 * 16 15 12 18 18 C 1.54129 * 109.27519 * 94.69572 * 16 15 12 19 19 S 1.83295 * 101.09213 * 92.13231 * 18 16 15 20 20 C 1.77440 * 96.59521 * 24.88073 * 19 18 16 21 21 C 1.38816 * 130.56815 * 164.57228 * 20 19 18 22 22 C 1.38032 * 120.15839 * 180.20436 * 21 20 19 23 23 C 1.38324 * 119.28913 * 0.02562 * 22 21 20 24 24 C 1.37699 * 120.54559 * 359.88012 * 23 22 21 25 25 C 1.38881 * 108.27694 * 344.56691 * 20 19 18 26 26 H 1.09000 * 109.47231 * 270.00484 * 1 2 3 27 27 H 1.09001 * 109.46755 * 29.99819 * 1 2 3 28 28 H 1.08997 * 109.47429 * 149.99988 * 1 2 3 29 29 H 1.09002 * 109.47580 * 39.94376 * 3 2 1 30 30 H 1.09003 * 109.46994 * 159.94239 * 3 2 1 31 31 H 0.97004 * 119.99558 * 180.02562 * 7 6 4 32 32 H 0.97002 * 120.00373 * 246.57924 * 15 12 2 33 33 H 1.09000 * 111.09905 * 210.09170 * 18 16 15 34 34 H 1.09004 * 111.09509 * 334.13475 * 18 16 15 35 35 H 1.08001 * 119.92437 * 0.22847 * 21 20 19 36 36 H 1.07998 * 120.35618 * 180.02562 * 22 21 20 37 37 H 1.07999 * 119.72322 * 179.85255 * 23 22 21 38 38 H 1.07995 * 119.47003 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.2363 1.8263 -1.3994 5 1 1.8225 1.2576 -2.2191 6 6 2.7999 3.0627 -1.6336 7 7 2.8333 3.5496 -2.8548 8 14 3.5161 4.0462 -0.2160 9 1 4.9503 3.7001 -0.0482 10 1 3.3874 5.4971 -0.5055 11 1 2.7795 3.7233 1.0324 12 16 2.2929 -1.4342 0.0006 13 8 3.6227 -1.1298 0.3986 14 8 1.4722 -2.3711 0.6847 15 7 2.3814 -1.9498 -1.5706 16 6 3.1667 -1.1911 -2.5473 17 1 3.2423 -0.1540 -2.2203 18 6 4.5801 -1.7979 -2.6454 19 16 4.3574 -2.9900 -4.0198 20 6 2.9921 -2.1594 -4.7909 21 6 2.4425 -2.3093 -6.0567 22 6 1.3663 -1.5354 -6.4416 23 6 0.8449 -0.6120 -5.5535 24 6 1.3889 -0.4647 -4.2971 25 6 2.4756 -1.2396 -3.8876 26 1 -0.3634 0.0001 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8899 -0.5138 29 1 1.6969 1.9773 0.6598 30 1 3.2152 1.1006 0.3525 31 1 3.2302 4.4192 -3.0195 32 1 1.9134 -2.7541 -1.8443 33 1 5.3170 -1.0368 -2.9017 34 1 4.8525 -2.3091 -1.7220 35 1 2.8577 -3.0334 -6.7421 36 1 0.9360 -1.6497 -7.4255 37 1 0.0044 -0.0011 -5.8481 38 1 0.9679 0.2613 -3.6175 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344570346.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:46 Heat of formation + Delta-G solvation = -57.752653 kcal Electronic energy + Delta-G solvation = -24802.953796 eV Core-core repulsion = 21283.719793 eV Total energy + Delta-G solvation = -3519.234003 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.47946 -38.42156 -37.40422 -37.14431 -36.96395 -34.45283 -32.46404 -31.72945 -30.23629 -29.98827 -26.83107 -24.94629 -23.88511 -23.66014 -22.11689 -20.51047 -19.30629 -19.00145 -18.45513 -18.24986 -17.66937 -16.83294 -16.37371 -16.22000 -15.99536 -15.76017 -15.40126 -14.92843 -14.59215 -14.52230 -14.29531 -14.14356 -14.04992 -13.65628 -13.48856 -13.38019 -13.26793 -13.18998 -13.02517 -12.99224 -12.60783 -12.40182 -12.27353 -12.01835 -11.96212 -11.39765 -11.32579 -10.88618 -10.72394 -10.51438 -9.83728 -9.75666 -8.45125 -8.23715 -6.27152 -0.44163 0.17888 0.39173 0.58967 1.19391 1.38422 1.43699 1.48268 1.89038 2.37391 2.50172 2.76912 3.09818 3.25984 3.39912 3.63275 3.94405 3.98812 4.09216 4.19362 4.27381 4.45526 4.51504 4.63595 4.66984 4.75353 4.83046 4.86354 4.99453 5.03156 5.06863 5.30461 5.37181 5.45402 5.48440 5.59368 5.70556 5.97096 6.01490 6.35177 6.79481 7.36861 8.88584 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.011084 B = 0.006387 C = 0.005175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.511652 B = 4382.768325 C = 5408.973332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.995 5.995 3 C 0.212 3.788 4 C -0.540 4.540 5 H 0.076 0.924 6 C 0.034 3.966 7 N -0.924 5.924 8 Si 0.911 3.089 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.247 1.247 12 S 2.800 3.200 13 O -1.002 7.002 14 O -1.002 7.002 15 N -1.102 6.102 16 C 0.183 3.817 17 H 0.116 0.884 18 C -0.098 4.098 19 S -0.147 6.147 20 C -0.085 4.085 21 C -0.099 4.099 22 C -0.087 4.087 23 C -0.126 4.126 24 C -0.081 4.081 25 C -0.121 4.121 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.044 0.956 30 H 0.039 0.961 31 H 0.265 0.735 32 H 0.421 0.579 33 H 0.110 0.890 34 H 0.126 0.874 35 H 0.148 0.852 36 H 0.167 0.833 37 H 0.144 0.856 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.508 -9.972 -4.413 11.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.836 5.836 3 C 0.087 3.913 4 C -0.579 4.579 5 H 0.094 0.906 6 C -0.167 4.167 7 N -0.564 5.564 8 Si 0.737 3.263 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.170 1.170 12 S 2.808 3.192 13 O -0.986 6.986 14 O -0.986 6.986 15 N -0.861 5.861 16 C 0.074 3.926 17 H 0.133 0.867 18 C -0.248 4.248 19 S 0.094 5.906 20 C -0.198 4.198 21 C -0.123 4.123 22 C -0.107 4.107 23 C -0.146 4.146 24 C -0.102 4.102 25 C -0.128 4.128 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.256 0.744 33 H 0.129 0.871 34 H 0.144 0.856 35 H 0.166 0.834 36 H 0.185 0.815 37 H 0.162 0.838 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.275 -11.201 -3.831 12.055 hybrid contribution -0.486 2.000 0.408 2.098 sum -2.761 -9.201 -3.423 10.198 Atomic orbital electron populations 1.21477 0.77672 1.03425 1.02211 1.57341 1.15859 1.21424 1.89016 1.19494 0.92439 0.82177 0.97158 1.21727 1.39011 1.03365 0.93771 0.90566 1.25458 0.95761 0.98373 0.97072 1.69987 1.45840 1.19218 1.21305 0.86258 0.79832 0.78438 0.81821 1.20025 1.21120 1.17030 1.01284 0.72790 0.72172 0.72996 1.93541 1.38275 1.84915 1.81833 1.93556 1.70180 1.62677 1.72185 1.55846 1.64060 1.38213 1.27979 1.20081 0.87585 0.97652 0.87238 0.86669 1.24942 0.99524 1.00251 1.00115 1.85690 1.39549 1.34516 1.30846 1.22288 0.99736 0.99764 0.98040 1.20726 0.97346 1.01198 0.93005 1.21505 0.94704 0.93986 1.00488 1.21286 1.01074 0.99327 0.92926 1.21094 0.94680 0.96956 0.97438 1.20691 0.98792 0.99237 0.94057 0.91829 0.90500 0.90954 0.93768 0.94312 0.92585 0.74438 0.87115 0.85604 0.83443 0.81544 0.83796 0.86937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.95 10.28 127.77 1.31 4.27 16 2 N -1.00 -36.64 3.24 -543.25 -1.76 -38.40 16 3 C 0.21 9.06 4.50 85.63 0.39 9.45 16 4 C -0.54 -26.07 8.10 25.60 0.21 -25.86 16 5 H 0.08 3.81 5.46 -2.91 -0.02 3.80 16 6 C 0.03 1.75 5.47 84.66 0.46 2.21 16 7 N -0.92 -50.99 13.96 21.45 0.30 -50.69 16 8 Si 0.91 40.19 27.55 68.60 1.89 42.08 16 9 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 10 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.25 -10.12 6.42 99.48 0.64 -9.48 16 12 S 2.80 101.18 5.99 -56.49 -0.34 100.85 16 13 O -1.00 -41.47 16.27 -128.00 -2.08 -43.56 16 14 O -1.00 -37.78 17.45 -128.00 -2.23 -40.02 16 15 N -1.10 -34.90 5.46 -170.67 -0.93 -35.83 16 16 C 0.18 6.30 3.03 44.68 0.14 6.44 16 17 H 0.12 4.73 5.12 -2.38 -0.01 4.72 16 18 C -0.10 -3.10 7.26 72.36 0.53 -2.57 16 19 S -0.15 -4.22 23.08 -56.49 -1.30 -5.52 16 20 C -0.09 -2.53 6.48 22.56 0.15 -2.38 16 21 C -0.10 -2.40 10.05 22.36 0.22 -2.17 16 22 C -0.09 -1.88 10.08 22.24 0.22 -1.65 16 23 C -0.13 -3.30 10.00 22.16 0.22 -3.08 16 24 C -0.08 -2.68 9.90 22.47 0.22 -2.46 16 25 C -0.12 -4.01 5.48 -19.33 -0.11 -4.11 16 26 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.08 2.35 8.07 -2.39 -0.02 2.33 16 28 H 0.07 1.91 7.96 -2.39 -0.02 1.89 16 29 H 0.04 1.84 6.90 -2.39 -0.02 1.82 16 30 H 0.04 1.74 6.41 -2.39 -0.02 1.72 16 31 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 32 H 0.42 11.57 8.83 -96.74 -0.85 10.72 16 33 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 34 H 0.13 3.80 8.06 -2.38 -0.02 3.78 16 35 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 36 H 0.17 2.28 8.06 -2.91 -0.02 2.25 16 37 H 0.14 3.14 8.06 -2.91 -0.02 3.11 16 38 H 0.11 4.20 6.28 -2.91 -0.02 4.18 16 Total: -1.00 -62.04 336.12 -2.31 -64.35 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: 0.18 Total: 28.65 kcal Atomic # 6 Polarization: -25.88 SS G_CDS: 3.96 Total: -21.92 kcal Atomic # 7 Polarization: -122.52 SS G_CDS: -2.39 Total: -124.91 kcal Atomic # 8 Polarization: -79.26 SS G_CDS: -4.32 Total: -83.57 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 1.89 Total: 42.08 kcal Atomic # 16 Polarization: 96.96 SS G_CDS: -1.64 Total: 95.32 kcal Total: -62.04 -2.31 -64.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344570346.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.602 kcal (2) G-P(sol) polarization free energy of solvation -62.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds