Wall clock time and date at job start Tue Mar 31 2020 15:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00284 * 2 1 4 4 H 1.48501 * 109.47066 * 239.99727 * 3 2 1 5 5 H 1.48504 * 109.46800 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47333 * 119.99819 * 3 2 1 7 7 C 1.37876 * 119.99993 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00507 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99907 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47079 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47171 * 180.02562 * 10 9 7 12 12 C 1.34783 * 119.99943 * 180.02562 * 11 10 9 13 13 O 1.21275 * 119.99914 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.99600 * 179.97438 * 12 11 10 15 15 N 1.46498 * 109.46769 * 179.97438 * 14 12 11 16 16 C 1.34777 * 119.99828 * 179.72341 * 15 14 12 17 17 O 1.21583 * 119.99943 * 0.28074 * 16 15 14 18 18 C 1.47623 * 120.00136 * 180.27895 * 16 15 14 19 19 C 1.39887 * 120.17861 * 89.72786 * 18 16 15 20 20 F 1.35104 * 120.10251 * 359.97438 * 19 18 16 21 21 C 1.38237 * 119.79294 * 179.72233 * 19 18 16 22 22 C 1.38293 * 120.15455 * 0.55598 * 21 19 18 23 23 C 1.38349 * 120.36034 * 359.71455 * 22 21 19 24 24 C 1.38075 * 120.20300 * 0.02562 * 23 22 21 25 25 Cl 1.73607 * 120.07855 * 180.02562 * 24 23 22 26 26 H 0.96996 * 119.99510 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.46394 * 60.00125 * 9 7 2 28 28 H 1.08994 * 109.46994 * 300.00204 * 9 7 2 29 29 H 1.08996 * 109.47280 * 59.99788 * 10 9 7 30 30 H 1.09008 * 109.47349 * 300.00089 * 10 9 7 31 31 H 0.96995 * 119.99612 * 359.97438 * 11 10 9 32 32 H 1.09004 * 109.47210 * 60.00194 * 14 12 11 33 33 H 1.08994 * 109.47121 * 300.00164 * 14 12 11 34 34 H 0.97001 * 120.00384 * 0.02562 * 15 14 12 35 35 H 1.07998 * 119.92386 * 180.29497 * 21 19 18 36 36 H 1.07996 * 119.82112 * 179.69610 * 22 21 19 37 37 H 1.08000 * 119.90042 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 7 1.5127 -4.9308 0.0012 12 6 2.1866 -6.0981 0.0027 13 8 3.3993 -6.0980 0.0040 14 6 1.4330 -7.4031 0.0026 15 7 2.3850 -8.5166 0.0037 16 6 1.9357 -9.7873 0.0095 17 8 0.7403 -10.0094 0.0087 18 6 2.8949 -10.9093 0.0169 19 6 3.3543 -11.4339 1.2296 20 9 2.9217 -10.9148 2.3995 21 6 4.2480 -12.4885 1.2272 22 6 4.6963 -13.0165 0.0302 23 6 4.2506 -12.4989 -1.1729 24 6 3.3537 -11.4492 -1.1878 25 17 2.7960 -10.8027 -2.6994 26 1 -0.4849 0.8401 -0.0004 27 1 0.6247 -2.5570 -0.8897 28 1 0.6240 -2.5567 0.8902 29 1 2.8711 -3.6040 0.8922 30 1 2.8726 -3.6048 -0.8877 31 1 0.5427 -4.9307 0.0005 32 1 0.8073 -7.4614 -0.8881 33 1 0.8054 -7.4603 0.8919 34 1 3.3387 -8.3394 0.0047 35 1 4.6003 -12.8982 2.1623 36 1 5.3983 -13.8371 0.0347 37 1 4.6052 -12.9173 -2.1033 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344609427.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:52 Heat of formation + Delta-G solvation = -107.098163 kcal Electronic energy + Delta-G solvation = -24037.789594 eV Core-core repulsion = 19948.158927 eV Total energy + Delta-G solvation = -4089.630667 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.47022 -40.54904 -39.51053 -38.61757 -36.98743 -35.21159 -34.47752 -32.93583 -32.03953 -31.09311 -30.07698 -27.85177 -24.91278 -24.05907 -23.39036 -21.22047 -20.94969 -20.44107 -18.87481 -17.97972 -17.34293 -16.79060 -16.52760 -16.26600 -15.98283 -15.82022 -15.65313 -15.31972 -14.84666 -14.62089 -14.49519 -14.06881 -13.87652 -13.71272 -13.43559 -13.02099 -12.74925 -12.43406 -12.33276 -12.18525 -11.90779 -11.54191 -11.27593 -11.05878 -10.70662 -10.43866 -10.39913 -10.00221 -9.61143 -9.56571 -9.41612 -9.33250 -9.29879 -8.66826 -8.42836 -6.12621 -4.16037 0.22240 0.39106 1.45426 2.14657 2.57904 2.74128 2.80838 3.28948 3.33126 3.35560 3.53385 3.59932 4.07378 4.23602 4.31907 4.38479 4.51733 4.73442 4.86826 5.13898 5.22164 5.24386 5.26227 5.31463 5.37190 5.54693 5.98459 6.01267 6.23679 6.25611 6.63619 6.73866 7.15391 7.44991 7.55684 7.73983 7.84418 7.87066 8.20893 8.40679 8.89438 9.49014 10.98842 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.023815 B = 0.002092 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.446479 B =13383.695400 C =13674.627366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.059 0.941 9 C 0.012 3.988 10 C 0.121 3.879 11 N -0.714 5.714 12 C 0.502 3.498 13 O -0.548 6.548 14 C 0.097 3.903 15 N -0.700 5.700 16 C 0.567 3.433 17 O -0.518 6.518 18 C -0.153 4.153 19 C 0.148 3.852 20 F -0.121 7.121 21 C -0.150 4.150 22 C -0.061 4.061 23 C -0.122 4.122 24 C 0.020 3.980 25 Cl -0.037 7.037 26 H 0.263 0.737 27 H 0.023 0.977 28 H 0.023 0.977 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.402 0.598 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.415 0.585 35 H 0.150 0.850 36 H 0.149 0.851 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.719 -28.944 -0.973 29.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.563 4.563 8 H 0.077 0.923 9 C -0.025 4.025 10 C 0.000 4.000 11 N -0.363 5.363 12 C 0.286 3.714 13 O -0.427 6.427 14 C -0.030 4.030 15 N -0.354 5.354 16 C 0.351 3.649 17 O -0.393 6.393 18 C -0.158 4.158 19 C 0.127 3.873 20 F -0.099 7.099 21 C -0.169 4.169 22 C -0.080 4.080 23 C -0.141 4.141 24 C -0.008 4.008 25 Cl -0.007 7.007 26 H 0.073 0.927 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.236 0.764 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.253 0.747 35 H 0.168 0.832 36 H 0.167 0.833 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 7.488 -28.821 -1.068 29.797 hybrid contribution 0.199 1.236 0.100 1.256 sum 7.687 -27.584 -0.968 28.652 Atomic orbital electron populations 1.69941 1.06088 1.27069 1.50081 1.24999 0.94909 0.99441 0.94921 0.86560 0.79513 0.82607 0.78781 1.20103 1.21217 1.20094 1.20990 0.93188 0.90343 1.51735 0.92293 1.19332 0.94186 0.91026 0.97993 1.21796 0.96121 0.81129 1.01001 1.46257 1.10864 1.06331 1.72874 1.20342 0.88270 0.85643 0.77140 1.90672 1.13757 1.87390 1.50902 1.21191 0.92188 0.84449 1.05182 1.45623 1.11661 1.04184 1.73963 1.17719 0.87877 0.82331 0.76975 1.90848 1.15259 1.84532 1.48679 1.19749 1.02602 1.01182 0.92259 1.17465 0.95503 0.94229 0.80053 1.91595 1.87961 1.85547 1.44784 1.21254 0.98458 0.96409 1.00797 1.21151 0.97706 0.98620 0.90498 1.21128 0.97242 0.95626 1.00069 1.20716 0.97108 0.96291 0.86638 1.98440 1.88136 1.85259 1.28906 0.92723 0.95824 0.95825 0.92306 0.92314 0.76414 0.87998 0.88008 0.74706 0.83218 0.83324 0.83396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.85 13.29 55.43 0.74 -25.11 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.29 9.11 -34.44 -0.31 -14.60 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 10 C 0.12 2.47 5.61 -4.05 -0.02 2.45 16 11 N -0.71 -11.62 5.56 -60.30 -0.33 -11.95 16 12 C 0.50 7.81 7.90 -10.98 -0.09 7.73 16 13 O -0.55 -10.20 15.67 5.56 0.09 -10.11 16 14 C 0.10 1.21 6.15 -5.19 -0.03 1.18 16 15 N -0.70 -8.92 5.52 -62.50 -0.35 -9.27 16 16 C 0.57 7.57 5.95 -12.43 -0.07 7.50 16 17 O -0.52 -8.37 17.11 5.29 0.09 -8.27 16 18 C -0.15 -1.67 5.64 -104.88 -0.59 -2.26 16 19 C 0.15 1.42 7.29 -38.97 -0.28 1.14 16 20 F -0.12 -1.36 16.83 2.25 0.04 -1.32 16 21 C -0.15 -0.92 10.01 -39.56 -0.40 -1.32 16 22 C -0.06 -0.28 10.03 -39.52 -0.40 -0.68 16 23 C -0.12 -0.73 9.81 -39.60 -0.39 -1.12 16 24 C 0.02 0.18 6.35 -39.07 -0.25 -0.06 16 25 Cl -0.04 -0.37 28.04 -51.86 -1.45 -1.82 16 26 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 27 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 31 H 0.40 5.60 8.47 -40.82 -0.35 5.25 16 32 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.41 5.20 7.42 -40.82 -0.30 4.90 16 35 H 0.15 0.56 8.06 -52.49 -0.42 0.14 16 36 H 0.15 0.18 8.06 -52.49 -0.42 -0.24 16 37 H 0.15 0.54 8.06 -52.49 -0.42 0.12 16 LS Contribution 352.25 15.07 5.31 5.31 Total: -1.00 -33.39 352.25 -7.96 -41.36 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -4.00 Total: 3.39 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -3.07 Total: 1.65 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: 0.06 Total: -46.33 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: 0.18 Total: -18.39 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.45 Total: -1.82 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.39 -7.96 -41.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344609427.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.741 kcal (2) G-P(sol) polarization free energy of solvation -33.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds