Wall clock time and date at job start Tue Mar 31 2020 15:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00284 * 2 1 4 4 H 1.48501 * 109.47066 * 239.99727 * 3 2 1 5 5 H 1.48504 * 109.46800 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47333 * 119.99819 * 3 2 1 7 7 C 1.37876 * 119.99993 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00507 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99907 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47079 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47171 * 180.02562 * 10 9 7 12 12 C 1.34783 * 119.99943 * 180.02562 * 11 10 9 13 13 O 1.21275 * 119.99914 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.99600 * 179.97438 * 12 11 10 15 15 N 1.46498 * 109.46769 * 179.97438 * 14 12 11 16 16 C 1.34777 * 119.99828 * 179.72341 * 15 14 12 17 17 O 1.21583 * 119.99943 * 0.28074 * 16 15 14 18 18 C 1.47623 * 120.00136 * 180.27895 * 16 15 14 19 19 C 1.39887 * 120.17861 * 89.72786 * 18 16 15 20 20 F 1.35104 * 120.10251 * 359.97438 * 19 18 16 21 21 C 1.38237 * 119.79294 * 179.72233 * 19 18 16 22 22 C 1.38293 * 120.15455 * 0.55598 * 21 19 18 23 23 C 1.38349 * 120.36034 * 359.71455 * 22 21 19 24 24 C 1.38075 * 120.20300 * 0.02562 * 23 22 21 25 25 Cl 1.73607 * 120.07855 * 180.02562 * 24 23 22 26 26 H 0.96996 * 119.99510 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.46394 * 60.00125 * 9 7 2 28 28 H 1.08994 * 109.46994 * 300.00204 * 9 7 2 29 29 H 1.08996 * 109.47280 * 59.99788 * 10 9 7 30 30 H 1.09008 * 109.47349 * 300.00089 * 10 9 7 31 31 H 0.96995 * 119.99612 * 359.97438 * 11 10 9 32 32 H 1.09004 * 109.47210 * 60.00194 * 14 12 11 33 33 H 1.08994 * 109.47121 * 300.00164 * 14 12 11 34 34 H 0.97001 * 120.00384 * 0.02562 * 15 14 12 35 35 H 1.07998 * 119.92386 * 180.29497 * 21 19 18 36 36 H 1.07996 * 119.82112 * 179.69610 * 22 21 19 37 37 H 1.08000 * 119.90042 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 7 1.5127 -4.9308 0.0012 12 6 2.1866 -6.0981 0.0027 13 8 3.3993 -6.0980 0.0040 14 6 1.4330 -7.4031 0.0026 15 7 2.3850 -8.5166 0.0037 16 6 1.9357 -9.7873 0.0095 17 8 0.7403 -10.0094 0.0087 18 6 2.8949 -10.9093 0.0169 19 6 3.3543 -11.4339 1.2296 20 9 2.9217 -10.9148 2.3995 21 6 4.2480 -12.4885 1.2272 22 6 4.6963 -13.0165 0.0302 23 6 4.2506 -12.4989 -1.1729 24 6 3.3537 -11.4492 -1.1878 25 17 2.7960 -10.8027 -2.6994 26 1 -0.4849 0.8401 -0.0004 27 1 0.6247 -2.5570 -0.8897 28 1 0.6240 -2.5567 0.8902 29 1 2.8711 -3.6040 0.8922 30 1 2.8726 -3.6048 -0.8877 31 1 0.5427 -4.9307 0.0005 32 1 0.8073 -7.4614 -0.8881 33 1 0.8054 -7.4603 0.8919 34 1 3.3387 -8.3394 0.0047 35 1 4.6003 -12.8982 2.1623 36 1 5.3983 -13.8371 0.0347 37 1 4.6052 -12.9173 -2.1033 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344609427.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:52 Heat of formation + Delta-G solvation = -130.599518 kcal Electronic energy + Delta-G solvation = -24038.808690 eV Core-core repulsion = 19948.158927 eV Total energy + Delta-G solvation = -4090.649762 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.20560 -41.53842 -40.63513 -39.48573 -37.65534 -36.77883 -35.66686 -34.87005 -32.75171 -31.79405 -31.62559 -29.11276 -26.57355 -24.99283 -23.96722 -22.96646 -21.94738 -21.75952 -19.79961 -18.71640 -18.53224 -18.02695 -17.76819 -17.48552 -17.02859 -16.87669 -16.57721 -16.46302 -16.08195 -15.89104 -15.73666 -15.04812 -15.00929 -14.61540 -14.38314 -14.31857 -14.27189 -13.68502 -13.25429 -13.24483 -12.92456 -12.77065 -12.56148 -12.52289 -12.25802 -12.24883 -11.72375 -11.50441 -11.43485 -11.05162 -10.61231 -10.48452 -10.21134 -10.09832 -9.90894 -8.24623 -6.35190 -0.36528 -0.15549 0.80301 1.15805 1.41606 1.43348 1.44007 1.51505 1.61292 2.22808 2.30632 2.44636 2.95088 3.10336 3.30161 3.59686 3.70910 3.75801 4.08434 4.20179 4.20366 4.28026 4.45483 4.48485 4.59467 4.81935 4.84145 4.95667 4.98433 5.09677 5.20190 5.45353 5.54105 5.57277 5.77192 6.12819 6.14668 6.44514 6.77988 6.80179 7.07524 7.34188 8.86891 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.023815 B = 0.002092 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.446479 B =13383.695400 C =13674.627366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.006 3.994 3 Si 0.965 3.035 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.021 3.979 10 C 0.141 3.859 11 N -0.709 5.709 12 C 0.508 3.492 13 O -0.577 6.577 14 C 0.105 3.895 15 N -0.700 5.700 16 C 0.569 3.431 17 O -0.554 6.554 18 C -0.181 4.181 19 C 0.122 3.878 20 F -0.138 7.138 21 C -0.140 4.140 22 C -0.041 4.041 23 C -0.113 4.113 24 C 0.005 3.995 25 Cl -0.054 7.054 26 H 0.266 0.734 27 H 0.009 0.991 28 H 0.009 0.991 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.414 0.586 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.416 0.584 35 H 0.178 0.822 36 H 0.195 0.805 37 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.585 -30.755 -0.985 32.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.789 3.211 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.586 4.586 8 H 0.078 0.922 9 C -0.017 4.017 10 C 0.018 3.982 11 N -0.360 5.360 12 C 0.295 3.705 13 O -0.457 6.457 14 C -0.022 4.022 15 N -0.353 5.353 16 C 0.354 3.646 17 O -0.432 6.432 18 C -0.185 4.185 19 C 0.102 3.898 20 F -0.117 7.117 21 C -0.158 4.158 22 C -0.059 4.059 23 C -0.131 4.131 24 C -0.023 4.023 25 Cl -0.025 7.025 26 H 0.074 0.926 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.251 0.749 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.254 0.746 35 H 0.195 0.805 36 H 0.212 0.788 37 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 9.355 -30.649 -1.081 32.063 hybrid contribution -0.331 1.696 0.110 1.732 sum 9.024 -28.952 -0.971 30.342 Atomic orbital electron populations 1.70051 1.07551 1.28061 1.50928 1.25880 0.95795 1.03141 0.94463 0.85505 0.78291 0.78150 0.79147 1.19305 1.20742 1.19303 1.21441 0.93627 0.91883 1.51604 0.92157 1.19151 0.94295 0.91763 0.96483 1.21279 0.95009 0.81679 1.00241 1.46030 1.11439 1.05379 1.73155 1.20723 0.87897 0.86117 0.75783 1.90660 1.15205 1.87835 1.52029 1.21168 0.91873 0.82606 1.06567 1.45679 1.11659 1.04276 1.73688 1.18128 0.87913 0.82815 0.75718 1.90811 1.16899 1.85079 1.50460 1.19683 1.03762 1.01365 0.93725 1.17835 0.97100 0.95778 0.79054 1.91544 1.88463 1.86088 1.45596 1.21665 0.96655 0.94665 1.02842 1.21707 0.96784 0.98481 0.88944 1.21556 0.95539 0.94009 1.02045 1.20914 0.98431 0.97582 0.85355 1.98429 1.88555 1.85738 1.29793 0.92562 0.97224 0.97246 0.93086 0.93065 0.74930 0.86515 0.86608 0.74602 0.80490 0.78755 0.80719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.11 13.29 21.45 0.28 -53.83 16 2 C 0.01 0.34 5.46 84.65 0.46 0.80 16 3 Si 0.96 43.28 29.54 68.60 2.03 45.30 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 7 C -0.55 -30.11 9.11 25.60 0.23 -29.88 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 9 C 0.02 1.01 5.09 29.85 0.15 1.16 16 10 C 0.14 5.81 5.61 86.38 0.48 6.30 16 11 N -0.71 -23.08 5.56 -463.06 -2.57 -25.65 16 12 C 0.51 15.78 7.90 87.66 0.69 16.47 16 13 O -0.58 -21.53 15.67 -3.01 -0.05 -21.57 16 14 C 0.10 2.60 6.15 85.63 0.53 3.12 16 15 N -0.70 -18.05 5.52 -469.92 -2.60 -20.64 16 16 C 0.57 15.49 5.95 86.72 0.52 16.01 16 17 O -0.55 -18.40 17.11 -3.98 -0.07 -18.47 16 18 C -0.18 -3.92 5.64 -20.03 -0.11 -4.03 16 19 C 0.12 2.26 7.29 22.67 0.17 2.43 16 20 F -0.14 -3.14 16.83 44.97 0.76 -2.39 16 21 C -0.14 -1.30 10.01 22.28 0.22 -1.07 16 22 C -0.04 -0.20 10.03 22.31 0.22 0.03 16 23 C -0.11 -1.01 9.81 22.26 0.22 -0.79 16 24 C 0.00 0.08 6.35 22.60 0.14 0.23 16 25 Cl -0.05 -1.07 28.04 -2.72 -0.08 -1.15 16 26 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 27 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.05 2.18 8.14 -2.38 -0.02 2.16 16 31 H 0.41 11.47 8.47 -92.71 -0.79 10.69 16 32 H 0.12 2.61 8.14 -2.38 -0.02 2.59 16 33 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.42 10.63 7.42 -92.71 -0.69 9.94 16 35 H 0.18 0.63 8.06 -2.91 -0.02 0.61 16 36 H 0.20 -0.78 8.06 -2.91 -0.02 -0.80 16 37 H 0.18 0.60 8.06 -2.91 -0.02 0.57 16 Total: -1.00 -73.92 352.25 1.30 -72.61 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -0.33 Total: 15.00 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: 3.93 Total: 10.78 kcal Atomic # 7 Polarization: -95.24 SS G_CDS: -4.88 Total: -100.12 kcal Atomic # 8 Polarization: -39.93 SS G_CDS: -0.12 Total: -40.04 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.76 Total: -2.39 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -0.08 Total: -1.15 kcal Total: -73.92 1.30 -72.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344609427.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.987 kcal (2) G-P(sol) polarization free energy of solvation -73.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds