Wall clock time and date at job start Tue Mar 31 2020 14:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.46918 * 2 1 4 4 C 1.52998 * 109.47073 * 240.00335 * 2 1 3 5 5 C 1.50699 * 109.47589 * 59.99915 * 4 2 1 6 6 H 1.08001 * 119.99497 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00199 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99571 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 119.99976 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47347 * 59.99750 * 9 7 5 11 11 H 1.48505 * 109.47140 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47099 * 299.99714 * 9 7 5 13 13 C 1.52990 * 109.47215 * 119.99762 * 2 1 3 14 14 N 1.46504 * 109.47672 * 300.00000 * 13 2 1 15 15 S 1.65597 * 120.00409 * 164.99788 * 14 13 2 16 16 O 1.42101 * 106.39989 * 311.46204 * 15 14 13 17 17 O 1.42097 * 106.40207 * 178.54635 * 15 14 13 18 18 C 1.76193 * 107.21777 * 65.00066 * 15 14 13 19 19 C 1.33717 * 124.50853 * 89.97932 * 18 15 14 20 20 C 1.37618 * 115.09620 * 179.97438 * 19 18 15 21 21 C 1.36635 * 113.26559 * 359.97438 * 20 19 18 22 22 C 1.43200 * 125.45492 * 179.97438 * 21 20 19 23 23 N 8.50196 * 139.39400 * 120.97915 * 2 1 3 24 24 S 1.70609 * 124.51572 * 269.97494 * 18 15 14 25 25 H 1.09004 * 109.47269 * 300.00338 * 1 2 3 26 26 H 1.09004 * 109.47248 * 59.99892 * 1 2 3 27 27 H 1.08993 * 109.47556 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47009 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.46857 * 299.99750 * 3 2 1 30 30 H 1.08996 * 109.47152 * 59.99902 * 3 2 1 31 31 H 1.09002 * 109.46988 * 179.97438 * 4 2 1 32 32 H 1.09001 * 109.46729 * 299.99444 * 4 2 1 33 33 H 0.97002 * 119.99537 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.47208 * 180.02562 * 13 2 1 35 35 H 1.09001 * 109.47258 * 60.00145 * 13 2 1 36 36 H 0.97004 * 119.99137 * 345.00072 * 14 13 2 37 37 H 1.08000 * 122.45621 * 359.97438 * 19 18 15 38 38 H 1.07992 * 123.36634 * 180.26508 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8703 -0.4821 -3.7320 8 7 2.6264 -1.5514 -3.8526 9 14 1.2471 0.3980 -5.2572 10 1 1.7420 1.7982 -5.2577 11 1 1.7422 -0.3019 -6.4697 12 1 -0.2379 0.3979 -5.2567 13 6 2.0399 -0.7211 1.2492 14 7 1.5517 -0.0306 2.4454 15 16 1.6256 -0.7780 3.9213 16 8 1.0838 -2.0791 3.7397 17 8 1.1154 0.1511 4.8676 18 6 3.3301 -0.9985 4.3094 19 6 4.0770 -0.1100 4.9731 20 6 5.3873 -0.4810 5.1712 21 6 5.6866 -1.7063 4.6458 22 6 6.9678 -2.3436 4.7016 23 7 7.9847 -2.8483 4.7442 24 16 4.2473 -2.3742 3.8884 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 3.1299 -0.7208 -1.2495 32 1 1.6766 -1.7489 -1.2492 33 1 2.8608 -1.8828 -4.7336 34 1 3.1299 -0.7207 1.2494 35 1 1.6766 -1.7488 1.2492 36 1 1.1850 0.8646 2.3729 37 1 3.6810 0.8301 5.3279 38 1 6.1059 0.1327 5.6938 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344957156.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:09 Heat of formation + Delta-G solvation = -25.770486 kcal Electronic energy + Delta-G solvation = -23121.556949 eV Core-core repulsion = 19603.709797 eV Total energy + Delta-G solvation = -3517.847152 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -38.69136 -37.84688 -37.27061 -36.78697 -36.00443 -33.67504 -31.97152 -30.81078 -27.08838 -26.52883 -26.01679 -25.83543 -22.81671 -21.51491 -20.79247 -19.04920 -18.53734 -17.38550 -17.00172 -16.58491 -16.40212 -15.75756 -14.74412 -14.69455 -14.62933 -14.50967 -14.21350 -13.85801 -13.47537 -13.33626 -13.14719 -12.88628 -12.71649 -12.51366 -12.24108 -12.18665 -12.11963 -12.01050 -11.70663 -11.38842 -11.27652 -11.02771 -10.89339 -10.66155 -10.48136 -10.30282 -9.97425 -9.72489 -9.42300 -9.23144 -9.09409 -8.96596 -8.39161 -6.03928 -4.04913 -0.42535 0.19336 0.69578 1.19493 1.68046 2.40554 2.80427 2.91743 3.30012 3.34398 3.35659 3.37127 3.53783 4.32334 4.42609 4.66445 4.83169 5.15710 5.25799 5.28884 5.31861 5.46800 5.64751 5.69448 5.74236 6.04158 6.13945 6.25366 6.32984 6.60911 6.63061 6.91608 6.97120 7.02343 7.07328 7.09098 7.57597 7.70233 7.94415 8.36656 8.99409 9.58533 11.07435 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014294 B = 0.003489 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.419916 B = 8023.020874 C = 9276.365491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.064 4.064 3 C -0.129 4.129 4 C 0.034 3.966 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.118 3.882 14 N -1.103 6.103 15 S 2.715 3.285 16 O -0.946 6.946 17 O -0.953 6.953 18 C -0.816 4.816 19 C -0.009 4.009 20 C -0.089 4.089 21 C -0.133 4.133 22 C 0.275 3.725 23 N -0.387 5.387 24 S 0.381 5.619 25 H 0.033 0.967 26 H 0.066 0.934 27 H 0.049 0.951 28 H 0.048 0.952 29 H 0.068 0.932 30 H 0.031 0.969 31 H 0.018 0.982 32 H 0.020 0.980 33 H 0.261 0.739 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.420 0.580 37 H 0.164 0.836 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.334 3.008 18.082 18.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.066 4.066 3 C -0.186 4.186 4 C -0.004 4.004 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.007 4.007 14 N -0.867 5.867 15 S 2.798 3.202 16 O -0.936 6.936 17 O -0.943 6.943 18 C -1.018 5.018 19 C -0.044 4.044 20 C -0.126 4.126 21 C -0.256 4.256 22 C -0.042 4.042 23 N -0.065 5.065 24 S 0.653 5.347 25 H 0.052 0.948 26 H 0.085 0.915 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.050 0.950 31 H 0.037 0.963 32 H 0.038 0.962 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.258 0.742 37 H 0.182 0.818 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 3.043 0.252 17.751 18.011 hybrid contribution 0.336 2.475 -0.345 2.521 sum 3.379 2.726 17.405 17.939 Atomic orbital electron populations 1.21770 0.94999 1.01429 1.00485 1.20810 0.95776 0.95730 0.94284 1.21777 1.00436 0.95929 1.00470 1.19132 0.96299 0.95362 0.89567 1.21146 1.31301 1.12123 0.90492 0.92260 1.24994 0.95278 0.95054 0.99059 1.69943 1.36897 1.22993 1.23587 0.86717 0.79206 0.79745 0.82656 1.20356 1.21424 1.20301 1.21710 0.98222 0.96523 0.84250 1.55469 1.77772 1.30885 1.22594 1.01505 0.72081 0.74004 0.72597 1.93631 1.74591 1.39631 1.85743 1.93589 1.76772 1.63528 1.60458 1.35739 1.33491 1.10343 1.22210 1.19684 0.91762 0.99331 0.93652 1.20915 0.97133 0.94073 1.00494 1.21104 0.93744 0.99980 1.10800 1.24228 0.91639 0.93897 0.94392 1.81335 1.10132 1.07412 1.07590 1.83403 0.93364 1.11902 1.45997 0.94827 0.91490 0.93180 0.93323 0.91331 0.94988 0.96330 0.96170 0.92980 0.91937 0.90246 0.74213 0.81849 0.82048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 8.05 37.15 0.30 -1.87 16 2 C -0.06 -1.10 0.55 -154.51 -0.08 -1.19 16 3 C -0.13 -2.03 8.05 37.16 0.30 -1.73 16 4 C 0.03 0.77 4.04 -27.88 -0.11 0.66 16 5 C -0.51 -12.98 7.65 -34.44 -0.26 -13.24 16 6 H 0.06 1.45 5.68 -52.49 -0.30 1.15 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -25.42 13.29 55.43 0.74 -24.68 16 9 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 13 C 0.12 1.67 5.11 -4.04 -0.02 1.65 16 14 N -1.10 -12.87 5.33 -10.61 -0.06 -12.93 16 15 S 2.72 31.84 5.86 -107.50 -0.63 31.21 16 16 O -0.95 -13.71 17.29 -57.17 -0.99 -14.70 16 17 O -0.95 -12.62 17.74 -57.17 -1.01 -13.63 16 18 C -0.82 -7.94 6.32 29.15 0.18 -7.75 16 19 C -0.01 -0.07 9.77 -41.39 -0.40 -0.47 16 20 C -0.09 -0.63 10.24 -40.39 -0.41 -1.04 16 21 C -0.13 -1.15 6.32 -38.24 -0.24 -1.39 16 22 C 0.27 2.79 15.83 -22.47 -0.36 2.44 16 23 N -0.39 -4.73 18.54 41.84 0.78 -3.96 16 24 S 0.38 3.61 22.82 -107.50 -2.45 1.15 16 25 H 0.03 0.46 7.20 -51.93 -0.37 0.09 16 26 H 0.07 1.21 6.62 -51.93 -0.34 0.87 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.07 1.20 6.62 -51.93 -0.34 0.86 16 30 H 0.03 0.40 6.60 -51.93 -0.34 0.06 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 1.15 7.75 -51.93 -0.40 0.75 16 36 H 0.42 4.35 6.47 -34.47 -0.22 4.13 16 37 H 0.16 0.95 8.02 -52.49 -0.42 0.53 16 38 H 0.16 0.70 8.06 -52.49 -0.42 0.27 16 LS Contribution 351.16 15.07 5.29 5.29 Total: -1.00 -31.67 351.16 -8.99 -40.66 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -4.42 Total: -1.52 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: -1.21 Total: -22.49 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: 1.46 Total: -41.57 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -2.00 Total: -28.33 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 35.45 SS G_CDS: -3.08 Total: 32.37 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.67 -8.99 -40.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344957156.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.893 kcal (2) G-P(sol) polarization free energy of solvation -31.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds