Wall clock time and date at job start Tue Mar 31 2020 14:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.46918 * 2 1 4 4 C 1.52998 * 109.47073 * 240.00335 * 2 1 3 5 5 C 1.50699 * 109.47589 * 59.99915 * 4 2 1 6 6 H 1.08001 * 119.99497 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00199 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99571 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 119.99976 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47347 * 59.99750 * 9 7 5 11 11 H 1.48505 * 109.47140 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47099 * 299.99714 * 9 7 5 13 13 C 1.52990 * 109.47215 * 119.99762 * 2 1 3 14 14 N 1.46504 * 109.47672 * 300.00000 * 13 2 1 15 15 S 1.65597 * 120.00409 * 164.99788 * 14 13 2 16 16 O 1.42101 * 106.39989 * 311.46204 * 15 14 13 17 17 O 1.42097 * 106.40207 * 178.54635 * 15 14 13 18 18 C 1.76193 * 107.21777 * 65.00066 * 15 14 13 19 19 C 1.33717 * 124.50853 * 89.97932 * 18 15 14 20 20 C 1.37618 * 115.09620 * 179.97438 * 19 18 15 21 21 C 1.36635 * 113.26559 * 359.97438 * 20 19 18 22 22 C 1.43200 * 125.45492 * 179.97438 * 21 20 19 23 23 N 8.50196 * 139.39400 * 120.97915 * 2 1 3 24 24 S 1.70609 * 124.51572 * 269.97494 * 18 15 14 25 25 H 1.09004 * 109.47269 * 300.00338 * 1 2 3 26 26 H 1.09004 * 109.47248 * 59.99892 * 1 2 3 27 27 H 1.08993 * 109.47556 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47009 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.46857 * 299.99750 * 3 2 1 30 30 H 1.08996 * 109.47152 * 59.99902 * 3 2 1 31 31 H 1.09002 * 109.46988 * 179.97438 * 4 2 1 32 32 H 1.09001 * 109.46729 * 299.99444 * 4 2 1 33 33 H 0.97002 * 119.99537 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.47208 * 180.02562 * 13 2 1 35 35 H 1.09001 * 109.47258 * 60.00145 * 13 2 1 36 36 H 0.97004 * 119.99137 * 345.00072 * 14 13 2 37 37 H 1.08000 * 122.45621 * 359.97438 * 19 18 15 38 38 H 1.07992 * 123.36634 * 180.26508 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8703 -0.4821 -3.7320 8 7 2.6264 -1.5514 -3.8526 9 14 1.2471 0.3980 -5.2572 10 1 1.7420 1.7982 -5.2577 11 1 1.7422 -0.3019 -6.4697 12 1 -0.2379 0.3979 -5.2567 13 6 2.0399 -0.7211 1.2492 14 7 1.5517 -0.0306 2.4454 15 16 1.6256 -0.7780 3.9213 16 8 1.0838 -2.0791 3.7397 17 8 1.1154 0.1511 4.8676 18 6 3.3301 -0.9985 4.3094 19 6 4.0770 -0.1100 4.9731 20 6 5.3873 -0.4810 5.1712 21 6 5.6866 -1.7063 4.6458 22 6 6.9678 -2.3436 4.7016 23 7 7.9847 -2.8483 4.7442 24 16 4.2473 -2.3742 3.8884 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 3.1299 -0.7208 -1.2495 32 1 1.6766 -1.7489 -1.2492 33 1 2.8608 -1.8828 -4.7336 34 1 3.1299 -0.7207 1.2494 35 1 1.6766 -1.7488 1.2492 36 1 1.1850 0.8646 2.3729 37 1 3.6810 0.8301 5.3279 38 1 6.1059 0.1327 5.6938 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344957156.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:08 Heat of formation + Delta-G solvation = -46.955836 kcal Electronic energy + Delta-G solvation = -23122.475615 eV Core-core repulsion = 19603.709797 eV Total energy + Delta-G solvation = -3518.765818 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.38304 -39.17078 -38.29670 -37.62131 -37.02419 -35.21345 -33.63417 -31.53483 -28.91591 -27.85080 -27.24173 -26.58010 -24.61559 -22.20465 -21.58968 -20.01103 -19.84435 -18.46565 -18.28332 -17.78882 -17.35823 -16.84653 -16.46254 -15.73682 -15.59603 -15.44398 -15.24769 -14.91859 -14.61950 -14.39416 -14.10895 -14.03789 -13.84862 -13.81651 -13.45168 -13.26366 -13.24891 -13.19264 -12.85417 -12.67327 -12.58832 -12.51195 -12.21667 -12.12435 -12.07315 -11.93552 -11.45947 -10.89507 -10.80148 -10.49998 -10.43998 -10.37227 -9.77833 -8.09127 -6.14761 -1.13988 -0.71294 -0.04612 0.49000 1.03348 1.45637 1.46294 1.53294 1.63567 1.96936 2.06048 2.48150 2.58307 2.63172 3.26083 3.41621 3.96272 4.03949 4.19463 4.23600 4.33198 4.53795 4.63296 4.72805 4.81226 4.84889 4.95435 5.08178 5.13321 5.23615 5.28358 5.55384 5.60715 5.63406 5.65985 5.91200 5.97982 6.11447 6.13041 6.39879 7.00454 7.52325 9.02552 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014294 B = 0.003489 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.419916 B = 8023.020874 C = 9276.365491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.062 4.062 3 C -0.126 4.126 4 C 0.037 3.963 5 C -0.513 4.513 6 H 0.068 0.932 7 C -0.001 4.001 8 N -0.935 5.935 9 Si 0.950 3.050 10 H -0.268 1.268 11 H -0.292 1.292 12 H -0.271 1.271 13 C 0.125 3.875 14 N -1.097 6.097 15 S 2.735 3.265 16 O -0.978 6.978 17 O -0.965 6.965 18 C -0.825 4.825 19 C 0.004 3.996 20 C -0.069 4.069 21 C -0.136 4.136 22 C 0.296 3.704 23 N -0.428 5.428 24 S 0.350 5.650 25 H 0.067 0.933 26 H 0.049 0.951 27 H 0.037 0.963 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.071 0.929 31 H -0.003 1.003 32 H -0.010 1.010 33 H 0.258 0.742 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.429 0.571 37 H 0.191 0.809 38 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.177 5.423 19.702 20.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.063 4.063 3 C -0.183 4.183 4 C -0.001 4.001 5 C -0.552 4.552 6 H 0.086 0.914 7 C -0.198 4.198 8 N -0.576 5.576 9 Si 0.776 3.224 10 H -0.193 1.193 11 H -0.218 1.218 12 H -0.196 1.196 13 C -0.001 4.001 14 N -0.861 5.861 15 S 2.821 3.179 16 O -0.969 6.969 17 O -0.955 6.955 18 C -1.029 5.029 19 C -0.032 4.032 20 C -0.106 4.106 21 C -0.260 4.260 22 C -0.020 4.020 23 N -0.106 5.106 24 S 0.622 5.378 25 H 0.086 0.914 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.015 0.985 32 H 0.009 0.991 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.268 0.732 37 H 0.208 0.792 38 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 2.837 2.688 19.365 19.756 hybrid contribution 0.403 1.750 -0.761 1.950 sum 3.240 4.437 18.604 19.399 Atomic orbital electron populations 1.21751 0.94583 1.00972 1.01306 1.20644 0.96101 0.96475 0.93096 1.21729 1.00470 0.94662 1.01426 1.19018 0.94833 0.94288 0.91924 1.21606 1.30215 1.11971 0.91373 0.91404 1.25821 0.95798 0.95848 1.02295 1.70083 1.38806 1.24807 1.23949 0.85733 0.78837 0.78883 0.78965 1.19315 1.21828 1.19597 1.21447 0.98977 0.95861 0.83778 1.55249 1.78053 1.31050 1.21777 1.00599 0.72323 0.72920 0.72021 1.93595 1.76070 1.41148 1.86043 1.93574 1.77633 1.63744 1.60537 1.35401 1.32376 1.11182 1.23944 1.20095 0.91654 0.99612 0.91832 1.21309 0.97309 0.93160 0.98777 1.21108 0.92623 1.00641 1.11579 1.24330 0.91471 0.92971 0.93179 1.81358 1.11478 1.08618 1.09117 1.83610 0.94325 1.12625 1.47207 0.91449 0.93150 0.94335 0.93322 0.93316 0.91061 0.98466 0.99122 0.93306 0.90585 0.91109 0.73232 0.79218 0.78623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.18 8.05 71.98 0.58 -3.60 16 2 C -0.06 -2.07 0.55 -52.19 -0.03 -2.10 16 3 C -0.13 -3.70 8.05 71.98 0.58 -3.12 16 4 C 0.04 1.73 4.04 29.85 0.12 1.85 16 5 C -0.51 -26.29 7.65 25.60 0.20 -26.10 16 6 H 0.07 3.29 5.68 -2.91 -0.02 3.28 16 7 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 8 N -0.94 -54.61 13.29 21.45 0.28 -54.33 16 9 Si 0.95 42.54 29.54 68.60 2.03 44.56 16 10 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 11 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 12 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 13 C 0.13 3.42 5.11 86.37 0.44 3.86 16 14 N -1.10 -23.07 5.33 -187.49 -1.00 -24.07 16 15 S 2.74 59.04 5.86 -56.49 -0.33 58.71 16 16 O -0.98 -27.74 17.29 -128.00 -2.21 -29.96 16 17 O -0.96 -22.99 17.74 -128.00 -2.27 -25.26 16 18 C -0.82 -14.16 6.32 66.79 0.42 -13.74 16 19 C 0.00 0.05 9.77 21.10 0.21 0.26 16 20 C -0.07 -0.70 10.24 21.75 0.22 -0.48 16 21 C -0.14 -2.07 6.32 23.14 0.15 -1.93 16 22 C 0.30 5.65 15.83 88.33 1.40 7.05 16 23 N -0.43 -10.22 18.54 19.00 0.35 -9.87 16 24 S 0.35 6.29 22.82 -56.49 -1.29 5.00 16 25 H 0.07 1.70 7.20 -2.39 -0.02 1.69 16 26 H 0.05 1.78 6.62 -2.38 -0.02 1.77 16 27 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.05 1.63 6.62 -2.39 -0.02 1.61 16 30 H 0.07 1.53 6.60 -2.39 -0.02 1.51 16 31 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 32 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 33 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 34 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.07 2.06 7.75 -2.39 -0.02 2.05 16 36 H 0.43 7.41 6.47 -96.74 -0.63 6.79 16 37 H 0.19 1.27 8.02 -2.91 -0.02 1.24 16 38 H 0.20 0.67 8.06 -2.91 -0.02 0.65 16 Total: -1.00 -69.76 351.16 0.79 -68.98 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: 0.48 Total: 3.84 kcal Atomic # 6 Polarization: -42.35 SS G_CDS: 4.75 Total: -37.60 kcal Atomic # 7 Polarization: -87.91 SS G_CDS: -0.36 Total: -88.27 kcal Atomic # 8 Polarization: -50.74 SS G_CDS: -4.48 Total: -55.22 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Atomic # 16 Polarization: 65.33 SS G_CDS: -1.62 Total: 63.71 kcal Total: -69.76 0.79 -68.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344957156.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.019 kcal (2) G-P(sol) polarization free energy of solvation -69.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds