Wall clock time and date at job start Tue Mar 31 2020 14:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 113.99900 * 2 1 4 4 H 1.09000 * 109.47783 * 30.05015 * 3 2 1 5 5 C 1.50707 * 109.47229 * 270.04495 * 3 2 1 6 6 O 1.21284 * 119.99627 * 0.02562 * 5 3 2 7 7 N 1.34779 * 119.99887 * 179.97438 * 5 3 2 8 8 C 1.38887 * 119.99851 * 180.02562 * 7 5 3 9 9 N 1.29944 * 125.36454 * 180.02562 * 8 7 5 10 10 C 1.31599 * 117.13917 * 180.02562 * 9 8 7 11 11 C 1.50696 * 122.23046 * 179.97438 * 10 9 8 12 12 C 1.34658 * 115.53424 * 359.97438 * 10 9 8 13 13 S 1.76202 * 125.92485 * 179.97438 * 12 10 9 14 14 C 1.76207 * 99.99963 * 180.02562 * 13 12 10 15 15 H 1.07999 * 119.99584 * 0.02562 * 14 13 12 16 16 C 1.38423 * 120.00085 * 179.97438 * 14 13 12 17 17 N 1.31810 * 120.00076 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00101 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46722 * 89.99969 * 18 16 14 20 20 H 1.48497 * 109.47326 * 210.00355 * 18 16 14 21 21 H 1.48504 * 109.46999 * 330.00900 * 18 16 14 22 22 S 1.76141 * 125.36526 * 359.69832 * 8 7 5 23 23 C 1.53003 * 109.46847 * 150.05006 * 3 2 1 24 24 C 1.53001 * 117.49696 * 3.60975 * 23 3 2 25 25 C 1.53000 * 117.50001 * 294.94737 * 23 3 2 26 26 H 1.09000 * 109.46960 * 55.13343 * 1 2 3 27 27 H 1.08999 * 109.47184 * 295.13800 * 1 2 3 28 28 H 1.08995 * 109.47631 * 175.13316 * 1 2 3 29 29 H 0.96997 * 119.99915 * 0.02562 * 7 5 3 30 30 H 1.09000 * 109.47289 * 90.02468 * 11 10 9 31 31 H 1.09002 * 109.46822 * 210.02101 * 11 10 9 32 32 H 1.09001 * 109.47316 * 330.02143 * 11 10 9 33 33 H 0.96997 * 119.99980 * 180.02562 * 17 16 14 34 34 H 1.08998 * 115.54749 * 149.27637 * 23 3 2 35 35 H 1.08992 * 117.49871 * 359.97438 * 24 23 3 36 36 H 1.09004 * 117.49502 * 145.02067 * 24 23 3 37 37 H 1.08993 * 117.49940 * 214.97661 * 25 23 3 38 38 H 1.09002 * 117.49490 * 359.97438 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3454 1.9992 0.5146 5 6 2.2135 1.7648 -1.4209 6 8 1.8919 1.0453 -2.3427 7 7 2.7518 2.9757 -1.6671 8 6 2.9387 3.3993 -2.9765 9 7 3.4467 4.5411 -3.3324 10 6 3.5492 4.7765 -4.6231 11 6 4.1204 6.0623 -5.1627 12 6 3.1096 3.7916 -5.4293 13 16 3.1172 3.8170 -7.1912 14 6 2.4128 2.2363 -7.5230 15 1 2.1266 1.5905 -6.7061 16 6 2.2254 1.8228 -8.8307 17 7 2.5743 2.6113 -9.8277 18 14 1.4781 0.1473 -9.1825 19 1 0.0012 0.2733 -9.2726 20 1 2.0100 -0.3719 -10.4680 21 1 1.8288 -0.7912 -8.0863 22 16 2.5319 2.4700 -4.4165 23 6 3.3595 1.2629 0.7202 24 6 3.8593 -0.0998 1.2040 25 6 3.3528 0.9329 2.2141 26 1 -0.3633 0.5875 -0.8432 27 1 -0.3633 0.4365 0.9303 28 1 -0.3634 -1.0239 -0.0872 29 1 3.0087 3.5512 -0.9298 30 1 5.1969 5.9545 -5.2949 31 1 3.6576 6.2907 -6.1228 32 1 3.9197 6.8718 -4.4609 33 1 2.4426 2.3217 -10.7440 34 1 4.1043 1.9753 0.3655 35 1 3.2268 -0.9659 1.0097 36 1 4.9331 -0.2837 1.1680 37 1 4.0935 1.4278 2.8422 38 1 2.3871 0.7465 2.6840 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348141603.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:47 Heat of formation + Delta-G solvation = -15.002037 kcal Electronic energy + Delta-G solvation = -22840.911061 eV Core-core repulsion = 19323.530864 eV Total energy + Delta-G solvation = -3517.380197 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.58489 -38.80501 -37.99884 -36.44840 -34.68862 -32.81574 -30.79088 -29.13003 -27.09772 -26.51429 -25.75812 -23.56609 -22.62627 -21.74235 -20.78224 -19.76800 -18.30907 -17.71821 -17.06678 -16.83076 -16.25351 -15.65072 -15.45124 -15.13082 -15.09355 -14.73442 -14.11822 -13.90784 -13.74470 -13.29952 -13.19051 -12.67567 -12.17814 -11.91405 -11.85795 -11.78247 -11.63880 -11.38109 -11.25823 -11.22724 -11.00267 -10.75162 -10.56224 -10.50369 -10.37554 -10.25458 -9.52666 -9.49884 -9.05066 -8.74409 -8.64760 -7.79984 -6.59469 -6.49761 -4.27233 1.37989 1.88671 2.37326 2.53873 2.75237 3.08698 3.10882 3.17879 3.32515 3.39019 3.57679 3.62504 3.98819 4.22636 4.45226 4.53499 4.76947 4.83212 4.84321 5.00096 5.04273 5.12076 5.21461 5.24067 5.37557 5.50246 5.59355 5.78825 5.98120 5.99264 6.14037 6.23477 6.44618 6.49154 6.66598 6.96530 7.18950 7.33960 7.96255 8.05077 8.51786 8.89230 10.46321 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014339 B = 0.003688 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.298271 B = 7590.018822 C = 9101.711988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.351 6.351 3 C 0.116 3.884 4 H 0.096 0.904 5 C 0.484 3.516 6 O -0.489 6.489 7 N -0.613 5.613 8 C 0.187 3.813 9 N -0.475 5.475 10 C 0.018 3.982 11 C -0.061 4.061 12 C -0.251 4.251 13 S 0.149 5.851 14 C -0.556 4.556 15 H 0.089 0.911 16 C 0.082 3.918 17 N -0.863 5.863 18 Si 0.924 3.076 19 H -0.271 1.271 20 H -0.277 1.277 21 H -0.264 1.264 22 S 0.200 5.800 23 C -0.168 4.168 24 C -0.156 4.156 25 C -0.167 4.167 26 H 0.049 0.951 27 H 0.043 0.957 28 H 0.092 0.908 29 H 0.414 0.586 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.277 0.723 34 H 0.121 0.879 35 H 0.110 0.890 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.788 -0.911 20.819 20.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.268 6.268 3 C 0.054 3.946 4 H 0.114 0.886 5 C 0.268 3.732 6 O -0.361 6.361 7 N -0.264 5.264 8 C -0.184 4.184 9 N -0.196 5.196 10 C -0.124 4.124 11 C -0.120 4.120 12 C -0.488 4.488 13 S 0.400 5.600 14 C -0.705 4.705 15 H 0.107 0.893 16 C -0.129 4.129 17 N -0.496 5.496 18 Si 0.749 3.251 19 H -0.196 1.196 20 H -0.202 1.202 21 H -0.189 1.189 22 S 0.443 5.557 23 C -0.186 4.186 24 C -0.192 4.192 25 C -0.204 4.204 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.110 0.890 29 H 0.251 0.749 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.139 0.861 35 H 0.128 0.872 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.848 -1.471 19.220 19.295 hybrid contribution -0.592 -0.553 0.674 1.054 sum -1.440 -2.024 19.894 20.048 Atomic orbital electron populations 1.22918 0.80222 1.03685 1.00150 1.88005 1.20356 1.24276 1.94162 1.21265 0.95732 0.87251 0.90325 0.88606 1.21543 0.78068 0.80514 0.93033 1.90719 1.47756 1.52631 1.44988 1.42440 1.61011 1.18203 1.04775 1.23770 1.08708 0.95732 0.90193 1.65818 1.18254 1.17289 1.18260 1.19036 1.09416 0.98667 0.85288 1.20113 0.99909 0.91890 1.00126 1.28773 1.10012 1.01715 1.08271 1.83061 1.69809 1.22514 0.84665 1.23264 1.48424 1.02910 0.95887 0.89349 1.25021 0.94125 0.99034 0.94683 1.70013 1.43202 1.36563 0.99860 0.86040 0.79439 0.81290 0.78378 1.19622 1.20249 1.18860 1.85878 1.61810 1.15749 0.92229 1.22315 0.96390 1.02837 0.97103 1.22918 1.01496 0.93183 1.01646 1.22997 1.03325 1.03570 0.90549 0.93189 0.93865 0.88964 0.74895 0.91881 0.91054 0.91946 0.91316 0.86131 0.87186 0.88610 0.88305 0.88528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.76 101.05 1.09 1.33 16 2 O -0.35 -4.08 8.25 -55.14 -0.45 -4.53 16 3 C 0.12 1.20 2.87 -27.88 -0.08 1.12 16 4 H 0.10 0.73 7.83 -51.93 -0.41 0.32 16 5 C 0.48 7.09 7.12 -10.98 -0.08 7.01 16 6 O -0.49 -9.30 13.99 -14.36 -0.20 -9.50 16 7 N -0.61 -8.91 5.15 -11.78 -0.06 -8.97 16 8 C 0.19 3.60 8.40 -87.20 -0.73 2.87 16 9 N -0.47 -9.52 10.55 -9.78 -0.10 -9.62 16 10 C 0.02 0.39 6.73 -83.96 -0.57 -0.18 16 11 C -0.06 -1.07 10.02 36.00 0.36 -0.71 16 12 C -0.25 -5.85 6.67 29.46 0.20 -5.65 16 13 S 0.15 3.78 20.74 -107.50 -2.23 1.55 16 14 C -0.56 -15.31 9.26 30.80 0.29 -15.02 16 15 H 0.09 2.43 5.97 -52.49 -0.31 2.11 16 16 C 0.08 2.22 5.49 -17.49 -0.10 2.12 16 17 N -0.86 -23.94 13.22 55.47 0.73 -23.21 16 18 Si 0.92 20.90 29.55 -169.99 -5.02 15.87 16 19 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.26 -5.99 7.11 56.52 0.40 -5.59 16 22 S 0.20 4.47 18.35 -107.50 -1.97 2.50 16 23 C -0.17 -1.47 5.61 -90.62 -0.51 -1.98 16 24 C -0.16 -1.35 9.87 -26.69 -0.26 -1.62 16 25 C -0.17 -1.13 10.24 -26.69 -0.27 -1.41 16 26 H 0.05 0.53 8.12 -51.93 -0.42 0.10 16 27 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.41 4.47 8.49 -40.82 -0.35 4.12 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 1.25 7.37 -51.93 -0.38 0.87 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.28 7.12 8.32 -40.82 -0.34 6.78 16 34 H 0.12 0.99 7.64 -51.93 -0.40 0.60 16 35 H 0.11 1.08 7.02 -51.93 -0.36 0.72 16 36 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 351.93 15.07 5.30 5.30 Total: -1.00 -32.54 351.93 -9.40 -41.94 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -4.73 Total: 0.76 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: -0.67 Total: -12.09 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: 0.57 Total: -41.80 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -0.66 Total: -14.03 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 8.24 SS G_CDS: -4.20 Total: 4.04 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.54 -9.40 -41.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348141603.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.936 kcal (2) G-P(sol) polarization free energy of solvation -32.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds