Wall clock time and date at job start Tue Mar 31 2020 14:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 113.99900 * 2 1 4 4 H 1.09000 * 109.47783 * 30.05015 * 3 2 1 5 5 C 1.50707 * 109.47229 * 270.04495 * 3 2 1 6 6 O 1.21284 * 119.99627 * 0.02562 * 5 3 2 7 7 N 1.34779 * 119.99887 * 179.97438 * 5 3 2 8 8 C 1.38887 * 119.99851 * 180.02562 * 7 5 3 9 9 N 1.29944 * 125.36454 * 180.02562 * 8 7 5 10 10 C 1.31599 * 117.13917 * 180.02562 * 9 8 7 11 11 C 1.50696 * 122.23046 * 179.97438 * 10 9 8 12 12 C 1.34658 * 115.53424 * 359.97438 * 10 9 8 13 13 S 1.76202 * 125.92485 * 179.97438 * 12 10 9 14 14 C 1.76207 * 99.99963 * 180.02562 * 13 12 10 15 15 H 1.07999 * 119.99584 * 0.02562 * 14 13 12 16 16 C 1.38423 * 120.00085 * 179.97438 * 14 13 12 17 17 N 1.31810 * 120.00076 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00101 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46722 * 89.99969 * 18 16 14 20 20 H 1.48497 * 109.47326 * 210.00355 * 18 16 14 21 21 H 1.48504 * 109.46999 * 330.00900 * 18 16 14 22 22 S 1.76141 * 125.36526 * 359.69832 * 8 7 5 23 23 C 1.53003 * 109.46847 * 150.05006 * 3 2 1 24 24 C 1.53001 * 117.49696 * 3.60975 * 23 3 2 25 25 C 1.53000 * 117.50001 * 294.94737 * 23 3 2 26 26 H 1.09000 * 109.46960 * 55.13343 * 1 2 3 27 27 H 1.08999 * 109.47184 * 295.13800 * 1 2 3 28 28 H 1.08995 * 109.47631 * 175.13316 * 1 2 3 29 29 H 0.96997 * 119.99915 * 0.02562 * 7 5 3 30 30 H 1.09000 * 109.47289 * 90.02468 * 11 10 9 31 31 H 1.09002 * 109.46822 * 210.02101 * 11 10 9 32 32 H 1.09001 * 109.47316 * 330.02143 * 11 10 9 33 33 H 0.96997 * 119.99980 * 180.02562 * 17 16 14 34 34 H 1.08998 * 115.54749 * 149.27637 * 23 3 2 35 35 H 1.08992 * 117.49871 * 359.97438 * 24 23 3 36 36 H 1.09004 * 117.49502 * 145.02067 * 24 23 3 37 37 H 1.08993 * 117.49940 * 214.97661 * 25 23 3 38 38 H 1.09002 * 117.49490 * 359.97438 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3454 1.9992 0.5146 5 6 2.2135 1.7648 -1.4209 6 8 1.8919 1.0453 -2.3427 7 7 2.7518 2.9757 -1.6671 8 6 2.9387 3.3993 -2.9765 9 7 3.4467 4.5411 -3.3324 10 6 3.5492 4.7765 -4.6231 11 6 4.1204 6.0623 -5.1627 12 6 3.1096 3.7916 -5.4293 13 16 3.1172 3.8170 -7.1912 14 6 2.4128 2.2363 -7.5230 15 1 2.1266 1.5905 -6.7061 16 6 2.2254 1.8228 -8.8307 17 7 2.5743 2.6113 -9.8277 18 14 1.4781 0.1473 -9.1825 19 1 0.0012 0.2733 -9.2726 20 1 2.0100 -0.3719 -10.4680 21 1 1.8288 -0.7912 -8.0863 22 16 2.5319 2.4700 -4.4165 23 6 3.3595 1.2629 0.7202 24 6 3.8593 -0.0998 1.2040 25 6 3.3528 0.9329 2.2141 26 1 -0.3633 0.5875 -0.8432 27 1 -0.3633 0.4365 0.9303 28 1 -0.3634 -1.0239 -0.0872 29 1 3.0087 3.5512 -0.9298 30 1 5.1969 5.9545 -5.2949 31 1 3.6576 6.2907 -6.1228 32 1 3.9197 6.8718 -4.4609 33 1 2.4426 2.3217 -10.7440 34 1 4.1043 1.9753 0.3655 35 1 3.2268 -0.9659 1.0097 36 1 4.9331 -0.2837 1.1680 37 1 4.0935 1.4278 2.8422 38 1 2.3871 0.7465 2.6840 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348141603.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:46 Heat of formation + Delta-G solvation = -35.296507 kcal Electronic energy + Delta-G solvation = -22841.791095 eV Core-core repulsion = 19323.530864 eV Total energy + Delta-G solvation = -3518.260231 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.77386 -40.31337 -39.07635 -37.19129 -36.07285 -34.83103 -32.26127 -30.09924 -28.77788 -27.73204 -27.34877 -24.95179 -23.21626 -22.86386 -21.97215 -21.16413 -19.96062 -19.19342 -18.46338 -17.82776 -17.43108 -17.09020 -16.91305 -16.63906 -16.39185 -15.69593 -15.59117 -15.25125 -14.95731 -14.63243 -14.40034 -14.10002 -13.55580 -13.43225 -13.29299 -13.08624 -12.90405 -12.64737 -12.50327 -12.45777 -12.25080 -12.14405 -12.05330 -11.77742 -11.40050 -11.33627 -11.14678 -10.93894 -10.55403 -10.49404 -10.40432 -9.55012 -8.59108 -8.38274 -6.31354 -0.25762 0.20142 0.81410 1.10307 1.25302 1.32394 1.37683 1.44793 1.61055 1.98829 2.13102 2.56599 2.80047 2.90561 3.07968 3.30179 3.62727 3.76187 3.85855 4.10125 4.19595 4.34999 4.42694 4.47729 4.50622 4.67611 4.81832 4.84822 4.87755 4.95710 5.00195 5.04328 5.22438 5.28189 5.36793 5.46329 5.76618 6.00651 6.04220 6.73309 6.84508 6.85789 8.48725 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014339 B = 0.003688 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.298271 B = 7590.018822 C = 9101.711988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.370 6.370 3 C 0.124 3.876 4 H 0.135 0.865 5 C 0.483 3.517 6 O -0.531 6.531 7 N -0.598 5.598 8 C 0.227 3.773 9 N -0.479 5.479 10 C 0.037 3.963 11 C -0.062 4.062 12 C -0.281 4.281 13 S 0.101 5.899 14 C -0.577 4.577 15 H 0.079 0.921 16 C 0.036 3.964 17 N -0.895 5.895 18 Si 0.984 3.016 19 H -0.262 1.262 20 H -0.263 1.263 21 H -0.269 1.269 22 S 0.150 5.850 23 C -0.179 4.179 24 C -0.175 4.175 25 C -0.138 4.138 26 H 0.031 0.969 27 H 0.076 0.924 28 H 0.098 0.902 29 H 0.437 0.563 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.282 0.718 34 H 0.127 0.873 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.118 0.882 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.872 -0.583 24.308 24.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.287 6.287 3 C 0.063 3.937 4 H 0.152 0.848 5 C 0.270 3.730 6 O -0.406 6.406 7 N -0.252 5.252 8 C -0.146 4.146 9 N -0.201 5.201 10 C -0.105 4.105 11 C -0.121 4.121 12 C -0.516 4.516 13 S 0.349 5.651 14 C -0.725 4.725 15 H 0.097 0.903 16 C -0.171 4.171 17 N -0.530 5.530 18 Si 0.805 3.195 19 H -0.187 1.187 20 H -0.187 1.187 21 H -0.194 1.194 22 S 0.395 5.605 23 C -0.197 4.197 24 C -0.212 4.212 25 C -0.174 4.174 26 H 0.049 0.951 27 H 0.094 0.906 28 H 0.116 0.884 29 H 0.279 0.721 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.145 0.855 35 H 0.112 0.888 36 H 0.117 0.883 37 H 0.136 0.864 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.928 -1.126 22.782 22.829 hybrid contribution -0.556 -0.642 -0.030 0.850 sum -1.484 -1.769 22.752 22.869 Atomic orbital electron populations 1.23075 0.79167 1.04206 1.01004 1.88007 1.21655 1.25100 1.93900 1.21471 0.97545 0.87569 0.87141 0.84823 1.22722 0.76106 0.79511 0.94670 1.90716 1.49259 1.53736 1.46845 1.42610 1.60521 1.18788 1.03321 1.24116 1.04777 0.94215 0.91488 1.66040 1.19549 1.17147 1.17395 1.19729 1.06293 0.98950 0.85478 1.20247 1.00563 0.90842 1.00464 1.28586 1.13037 1.02857 1.07136 1.82852 1.72574 1.22598 0.87071 1.23442 1.49154 1.03754 0.96154 0.90320 1.25863 0.94455 1.02448 0.94330 1.70086 1.44425 1.38190 1.00258 0.85152 0.78999 0.76898 0.78416 1.18722 1.18672 1.19393 1.86111 1.62815 1.17101 0.94488 1.22360 0.95549 1.03012 0.98826 1.22944 1.01578 0.92991 1.03684 1.23093 1.04072 1.01061 0.89221 0.95051 0.90603 0.88382 0.72148 0.90302 0.91379 0.89361 0.90867 0.85513 0.88750 0.88270 0.86362 0.87503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.76 113.37 1.22 1.57 16 2 O -0.37 -7.85 8.25 -129.94 -1.07 -8.92 16 3 C 0.12 2.21 2.87 29.85 0.09 2.29 16 4 H 0.13 1.41 7.83 -2.39 -0.02 1.39 16 5 C 0.48 13.29 7.12 87.66 0.62 13.92 16 6 O -0.53 -20.11 13.99 16.00 0.22 -19.88 16 7 N -0.60 -15.91 5.15 -309.57 -1.59 -17.50 16 8 C 0.23 8.44 8.40 179.15 1.50 9.94 16 9 N -0.48 -18.30 10.55 -184.87 -1.95 -20.25 16 10 C 0.04 1.53 6.73 41.77 0.28 1.81 16 11 C -0.06 -2.08 10.02 71.23 0.71 -1.36 16 12 C -0.28 -13.36 6.67 67.00 0.45 -12.91 16 13 S 0.10 5.36 20.74 -56.49 -1.17 4.19 16 14 C -0.58 -33.12 9.26 67.86 0.63 -32.49 16 15 H 0.08 4.54 5.97 -2.91 -0.02 4.52 16 16 C 0.04 2.02 5.49 84.74 0.46 2.48 16 17 N -0.90 -51.14 13.22 21.59 0.29 -50.85 16 18 Si 0.98 43.82 29.55 68.60 2.03 45.85 16 19 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 20 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 22 S 0.15 6.87 18.35 -56.49 -1.04 5.83 16 23 C -0.18 -2.54 5.61 -10.79 -0.06 -2.60 16 24 C -0.17 -2.66 9.87 30.62 0.30 -2.35 16 25 C -0.14 -1.30 10.24 30.62 0.31 -0.99 16 26 H 0.03 0.62 8.12 -2.39 -0.02 0.60 16 27 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.44 7.79 8.49 -92.71 -0.79 7.00 16 30 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.07 2.36 7.37 -2.39 -0.02 2.34 16 32 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.28 14.83 8.32 -92.71 -0.77 14.06 16 34 H 0.13 1.64 7.64 -2.39 -0.02 1.62 16 35 H 0.09 1.74 7.02 -2.39 -0.02 1.73 16 36 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 37 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -73.64 351.93 2.56 -71.08 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 0.32 Total: 11.15 kcal Atomic # 6 Polarization: -27.22 SS G_CDS: 6.52 Total: -20.69 kcal Atomic # 7 Polarization: -85.34 SS G_CDS: -3.26 Total: -88.60 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -0.85 Total: -28.81 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: 12.23 SS G_CDS: -2.21 Total: 10.02 kcal Total: -73.64 2.56 -71.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348141603.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.785 kcal (2) G-P(sol) polarization free energy of solvation -73.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds