Wall clock time and date at job start Tue Mar 31 2020 14:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 119.99868 * 2 1 4 4 C 1.53001 * 109.47127 * 120.00137 * 3 2 1 5 5 O 1.42903 * 109.47391 * 0.02562 * 3 2 1 6 6 C 1.52998 * 109.47320 * 240.00038 * 3 2 1 7 7 C 1.50701 * 109.47213 * 60.12665 * 6 3 2 8 8 O 1.21292 * 119.99897 * 354.31292 * 7 6 3 9 9 N 1.34778 * 120.00281 * 174.31471 * 7 6 3 10 10 C 1.38896 * 119.99719 * 180.02562 * 9 7 6 11 11 N 1.29943 * 125.35996 * 179.97438 * 10 9 7 12 12 C 1.31594 * 117.13817 * 179.97438 * 11 10 9 13 13 C 1.50701 * 122.23008 * 179.97438 * 12 11 10 14 14 C 1.34660 * 115.53798 * 359.97438 * 12 11 10 15 15 S 1.76202 * 125.92882 * 179.97438 * 14 12 11 16 16 C 1.76205 * 99.99464 * 180.02562 * 15 14 12 17 17 H 1.07996 * 120.00110 * 359.97438 * 16 15 14 18 18 C 1.38426 * 119.99498 * 180.02562 * 16 15 14 19 19 N 1.31808 * 120.00374 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99869 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47045 * 89.99971 * 20 18 16 22 22 H 1.48502 * 109.47138 * 209.99663 * 20 18 16 23 23 H 1.48498 * 109.46847 * 329.99935 * 20 18 16 24 24 S 1.76137 * 125.37062 * 359.97243 * 10 9 7 25 25 H 1.08001 * 120.00095 * 0.02562 * 1 2 3 26 26 H 1.07997 * 120.00401 * 179.97438 * 1 2 3 27 27 H 1.08000 * 120.00155 * 180.02562 * 2 1 3 28 28 H 1.08993 * 109.47322 * 184.93386 * 4 3 2 29 29 H 1.09000 * 109.47027 * 304.93739 * 4 3 2 30 30 H 1.09002 * 109.46875 * 64.93636 * 4 3 2 31 31 H 0.96701 * 113.99789 * 299.99832 * 5 3 2 32 32 H 1.08998 * 109.47339 * 300.13115 * 6 3 2 33 33 H 1.08997 * 109.47703 * 180.12864 * 6 3 2 34 34 H 0.96998 * 119.99865 * 359.97438 * 9 7 6 35 35 H 1.08994 * 109.47061 * 90.02689 * 13 12 11 36 36 H 1.09007 * 109.46970 * 210.02099 * 13 12 11 37 37 H 1.08996 * 109.47478 * 330.02100 * 13 12 11 38 38 H 0.97001 * 120.00218 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3862 1.2492 5 8 1.1349 2.3913 0.0006 6 6 2.9431 1.3863 -1.2492 7 6 2.0764 1.3096 -2.4797 8 8 0.8871 1.0974 -2.3715 9 7 2.6228 1.4766 -3.7004 10 6 1.8239 1.4064 -4.8344 11 7 2.2392 1.5515 -6.0570 12 6 1.3396 1.4527 -7.0123 13 6 1.6946 1.6019 -8.4693 14 6 0.0806 1.2093 -6.6011 15 16 -1.3299 1.0276 -7.6414 16 6 -2.5718 0.7392 -6.4252 17 1 -2.3083 0.7215 -5.3780 18 6 -3.8851 0.5345 -6.8121 19 7 -4.2066 0.5556 -8.0902 20 14 -5.2017 0.2281 -5.5228 21 1 -5.7897 1.5239 -5.0982 22 1 -6.2659 -0.6338 -6.0971 23 1 -4.5961 -0.4493 -4.3482 24 16 0.0882 1.1068 -4.8418 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9352 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 3.4205 2.3649 1.2946 29 1 2.3277 1.2406 2.1370 30 1 3.7078 0.6106 1.2060 31 1 0.5433 2.4034 -0.7642 32 1 3.6499 0.5565 -1.2504 33 1 3.4898 2.3292 -1.2481 34 1 3.5739 1.6466 -3.7868 35 1 1.9552 0.6271 -8.8814 36 1 0.8410 2.0090 -9.0114 37 1 2.5441 2.2774 -8.5690 38 1 -5.1269 0.4125 -8.3613 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352846215.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:51 Heat of formation + Delta-G solvation = -31.196454 kcal Electronic energy + Delta-G solvation = -23087.591198 eV Core-core repulsion = 19569.508759 eV Total energy + Delta-G solvation = -3518.082440 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.63882 -38.80446 -37.81207 -34.76200 -33.08733 -32.83904 -31.56196 -30.48802 -28.55143 -27.08559 -25.78450 -23.88362 -22.37253 -21.17150 -19.92075 -19.51987 -18.13638 -17.71496 -17.09172 -16.59979 -16.01958 -15.87541 -15.43043 -15.12211 -14.64987 -14.30507 -14.02104 -13.80495 -13.21597 -12.90657 -12.80502 -12.69532 -12.52622 -12.22512 -11.99664 -11.92629 -11.81218 -11.40548 -11.27985 -11.17358 -11.07708 -10.83903 -10.59987 -10.28000 -10.25073 -9.99611 -9.55293 -9.22423 -9.05229 -8.76645 -8.67219 -7.82044 -6.61693 -6.52285 -4.29635 1.35395 1.86574 2.33987 2.42026 2.51917 2.85112 3.06827 3.08741 3.15963 3.34068 3.60121 3.96362 4.07599 4.37414 4.49491 4.63647 4.81043 5.01897 5.05435 5.14046 5.19297 5.22805 5.29960 5.57253 5.57877 5.87940 5.96164 6.01572 6.11485 6.21515 6.42858 6.47246 6.62963 6.80139 6.93799 7.13170 7.31287 7.57174 7.93508 8.02308 8.49943 8.86820 10.44084 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.012656 B = 0.004231 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.939615 B = 6616.156865 C = 8606.947858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.200 4.200 3 C 0.179 3.821 4 C -0.133 4.133 5 O -0.561 6.561 6 C -0.159 4.159 7 C 0.506 3.494 8 O -0.504 6.504 9 N -0.614 5.614 10 C 0.185 3.815 11 N -0.476 5.476 12 C 0.018 3.982 13 C -0.061 4.061 14 C -0.252 4.252 15 S 0.149 5.851 16 C -0.556 4.556 17 H 0.089 0.911 18 C 0.082 3.918 19 N -0.863 5.863 20 Si 0.924 3.076 21 H -0.271 1.271 22 H -0.277 1.277 23 H -0.265 1.265 24 S 0.204 5.796 25 H 0.102 0.898 26 H 0.095 0.905 27 H 0.109 0.891 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.387 0.613 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.414 0.586 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.868 0.583 12.667 18.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.218 4.218 3 C 0.137 3.863 4 C -0.191 4.191 5 O -0.371 6.371 6 C -0.199 4.199 7 C 0.292 3.708 8 O -0.379 6.379 9 N -0.263 5.263 10 C -0.186 4.186 11 N -0.197 5.197 12 C -0.124 4.124 13 C -0.121 4.121 14 C -0.489 4.489 15 S 0.400 5.600 16 C -0.705 4.705 17 H 0.107 0.893 18 C -0.129 4.129 19 N -0.496 5.496 20 Si 0.749 3.251 21 H -0.196 1.196 22 H -0.203 1.203 23 H -0.189 1.189 24 S 0.447 5.553 25 H 0.121 0.879 26 H 0.113 0.887 27 H 0.127 0.873 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.240 0.760 32 H 0.127 0.873 33 H 0.124 0.876 34 H 0.251 0.749 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.660 0.500 12.590 17.861 hybrid contribution -0.087 -0.319 0.485 0.587 sum 12.573 0.181 13.075 18.141 Atomic orbital electron populations 1.23698 0.95969 1.02012 0.96156 1.23191 0.96835 0.97567 1.04246 1.19792 0.88126 0.85601 0.92756 1.21697 0.98687 1.02551 0.96125 1.86441 1.50884 1.48590 1.51190 1.22408 0.99568 1.05726 0.92194 1.20892 0.89316 0.76624 0.83932 1.90671 1.15551 1.46841 1.84843 1.42470 1.11631 1.69216 1.02946 1.23801 0.94974 1.11386 0.88473 1.65810 1.37356 1.19182 0.97349 1.19031 0.86684 1.11331 0.95382 1.20116 1.01539 1.01565 0.88865 1.28781 1.05062 1.11640 1.03369 1.83091 0.90825 1.78738 1.07373 1.23256 0.94669 1.57391 0.95192 0.89336 1.25022 0.98118 0.93143 0.96567 1.70011 1.20367 1.44421 1.14794 0.86039 0.79638 0.78942 0.80506 1.19589 1.20267 1.18908 1.85772 1.00595 1.70278 0.98625 0.87938 0.88701 0.87327 0.91577 0.91379 0.91017 0.76008 0.87294 0.87566 0.74887 0.91901 0.91049 0.91948 0.91292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 12.60 29.02 0.37 -1.38 16 2 C -0.20 -2.20 7.47 -36.02 -0.27 -2.46 16 3 C 0.18 1.77 1.08 -91.77 -0.10 1.67 16 4 C -0.13 -1.01 8.82 37.16 0.33 -0.68 16 5 O -0.56 -6.94 11.92 -51.72 -0.62 -7.55 16 6 C -0.16 -1.33 4.97 -27.88 -0.14 -1.47 16 7 C 0.51 6.42 7.28 -10.98 -0.08 6.34 16 8 O -0.50 -7.94 9.48 -10.95 -0.10 -8.04 16 9 N -0.61 -8.31 5.40 -11.78 -0.06 -8.37 16 10 C 0.18 3.41 8.40 -87.19 -0.73 2.68 16 11 N -0.48 -9.37 10.55 -9.78 -0.10 -9.47 16 12 C 0.02 0.38 6.73 -83.96 -0.57 -0.19 16 13 C -0.06 -1.07 10.02 36.01 0.36 -0.71 16 14 C -0.25 -5.73 6.67 29.47 0.20 -5.54 16 15 S 0.15 3.72 20.74 -107.50 -2.23 1.49 16 16 C -0.56 -15.02 9.26 30.80 0.29 -14.73 16 17 H 0.09 2.36 5.97 -52.49 -0.31 2.05 16 18 C 0.08 2.19 5.49 -17.49 -0.10 2.09 16 19 N -0.86 -23.67 13.22 55.47 0.73 -22.94 16 20 Si 0.92 20.54 29.55 -169.99 -5.02 15.51 16 21 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 22 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 23 H -0.26 -5.86 7.11 56.52 0.40 -5.45 16 24 S 0.20 4.32 18.35 -107.50 -1.97 2.35 16 25 H 0.10 1.34 6.41 -52.49 -0.34 1.00 16 26 H 0.09 1.11 8.06 -52.49 -0.42 0.69 16 27 H 0.11 1.05 8.06 -52.49 -0.42 0.62 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.39 5.07 5.79 45.56 0.26 5.34 16 32 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.41 4.20 8.82 -40.82 -0.36 3.84 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.07 1.24 7.38 -51.93 -0.38 0.86 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.28 7.05 8.32 -40.82 -0.34 6.71 16 LS Contribution 345.12 15.07 5.20 5.20 Total: -1.00 -31.14 345.12 -8.69 -39.83 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -4.07 Total: 6.36 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: -0.44 Total: -14.37 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: 0.57 Total: -40.78 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.72 Total: -15.59 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 8.04 SS G_CDS: -4.20 Total: 3.84 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.14 -8.69 -39.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352846215.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.632 kcal (2) G-P(sol) polarization free energy of solvation -31.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds