Wall clock time and date at job start Tue Mar 31 2020 14:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99848 * 2 1 4 4 C 1.53001 * 109.47058 * 180.02562 * 3 2 1 5 5 C 1.50700 * 115.55082 * 60.67486 * 4 3 2 6 6 O 1.21279 * 119.99681 * 245.62554 * 5 4 3 7 7 N 1.34773 * 119.99689 * 65.62915 * 5 4 3 8 8 C 1.38896 * 119.99499 * 185.08892 * 7 5 4 9 9 N 1.29947 * 125.36392 * 179.72503 * 8 7 5 10 10 C 1.31595 * 117.13751 * 179.77292 * 9 8 7 11 11 C 1.50697 * 122.22678 * 180.27108 * 10 9 8 12 12 C 1.34651 * 115.53707 * 0.51605 * 10 9 8 13 13 S 1.76199 * 125.92844 * 179.74832 * 12 10 9 14 14 C 1.76197 * 100.00057 * 180.02562 * 13 12 10 15 15 H 1.08002 * 119.99874 * 0.02562 * 14 13 12 16 16 C 1.38427 * 120.00439 * 180.02562 * 14 13 12 17 17 N 1.31810 * 120.00453 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99741 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47388 * 89.99813 * 18 16 14 20 20 H 1.48498 * 109.47311 * 210.00124 * 18 16 14 21 21 H 1.48510 * 109.47180 * 330.00011 * 18 16 14 22 22 S 1.76137 * 125.36807 * 0.02562 * 8 7 5 23 23 C 1.52997 * 117.49704 * 275.00234 * 4 3 2 24 24 C 1.53008 * 117.49608 * 206.34323 * 4 3 2 25 25 H 1.09003 * 109.47172 * 60.00014 * 1 2 3 26 26 H 1.09008 * 109.47070 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47309 * 299.99725 * 1 2 3 28 28 H 1.09005 * 109.47307 * 300.00026 * 3 2 1 29 29 H 1.09000 * 109.47047 * 59.99982 * 3 2 1 30 30 H 0.96996 * 120.00842 * 5.08861 * 7 5 4 31 31 H 1.09008 * 109.46948 * 270.25910 * 11 10 9 32 32 H 1.08994 * 109.47967 * 30.26480 * 11 10 9 33 33 H 1.09006 * 109.47184 * 150.26754 * 11 10 9 34 34 H 0.97000 * 119.99837 * 179.97438 * 17 16 14 35 35 H 1.09005 * 117.49788 * 0.02562 * 23 4 3 36 36 H 1.08996 * 117.50331 * 145.02427 * 23 4 3 37 37 H 1.08991 * 117.49638 * 214.97748 * 24 4 3 38 38 H 1.09001 * 117.49490 * 359.97438 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1303 0.4698 -1.1864 6 8 4.7012 -0.5891 -1.0322 7 7 4.0280 1.0072 -2.4181 8 6 4.4819 0.3001 -3.5241 9 7 4.4303 0.7145 -4.7547 10 6 4.9129 -0.0882 -5.6790 11 6 4.9165 0.2794 -7.1405 12 6 5.3985 -1.2621 -5.2325 13 16 6.0998 -2.5362 -6.2271 14 6 6.4933 -3.7166 -4.9796 15 1 6.2723 -3.5022 -3.9444 16 6 7.0856 -4.9188 -5.3262 17 7 7.3795 -5.8020 -4.3929 18 14 7.4685 -5.2894 -7.1166 19 1 8.8352 -4.8075 -7.4406 20 1 7.3929 -6.7546 -7.3460 21 1 6.4816 -4.6005 -7.9867 22 16 5.2113 -1.3025 -3.4806 23 6 4.2308 1.0107 1.3510 24 6 4.3359 2.3413 0.6015 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6885 1.8465 -0.8900 29 1 1.6885 1.8464 0.8900 30 1 3.6374 1.8877 -2.5323 31 1 3.9885 -0.0579 -7.6023 32 1 5.0010 1.3612 -7.2429 33 1 5.7626 -0.1994 -7.6335 34 1 7.7943 -6.6445 -4.6359 35 1 3.6016 0.9819 2.2407 36 1 5.1189 0.3795 1.3826 37 1 5.2929 2.5848 0.1403 38 1 3.7758 3.1884 0.9977 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353111053.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:24 Heat of formation + Delta-G solvation = -13.034886 kcal Electronic energy + Delta-G solvation = -22836.469445 eV Core-core repulsion = 19319.174550 eV Total energy + Delta-G solvation = -3517.294895 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.57051 -38.80609 -38.05564 -36.51904 -34.73228 -32.72484 -30.62342 -28.64810 -27.16302 -26.09051 -25.86727 -24.85593 -22.82103 -22.24043 -20.73637 -19.27178 -18.04886 -17.63480 -17.01885 -16.46580 -16.18769 -15.84732 -15.70563 -15.25858 -15.01135 -14.84831 -14.21739 -13.96985 -13.72932 -13.19218 -12.84441 -12.74621 -12.58671 -12.15297 -11.99815 -11.89540 -11.70346 -11.54768 -11.30974 -11.28530 -11.03119 -10.72155 -10.62948 -10.57127 -10.11285 -9.97252 -9.79652 -9.42982 -9.13788 -8.82205 -8.74210 -7.84988 -6.69585 -6.52451 -4.25713 1.34477 1.82998 2.40626 2.50167 2.76617 2.89097 3.05484 3.12395 3.22099 3.40149 3.54839 3.69410 4.05621 4.28705 4.40828 4.51652 4.53120 4.65922 4.87268 4.91316 5.04295 5.10557 5.15919 5.20604 5.24830 5.40629 5.46642 5.60794 5.82727 5.88150 6.08980 6.14109 6.36905 6.43370 6.83815 6.90926 7.17815 7.70429 8.01547 8.27592 8.45570 8.87200 10.55479 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.016505 B = 0.003477 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.083790 B = 8050.652894 C = 8712.954838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.380 6.380 3 C 0.104 3.896 4 C -0.158 4.158 5 C 0.549 3.451 6 O -0.490 6.490 7 N -0.613 5.613 8 C 0.196 3.804 9 N -0.483 5.483 10 C 0.031 3.969 11 C -0.063 4.063 12 C -0.239 4.239 13 S 0.052 5.948 14 C -0.545 4.545 15 H 0.105 0.895 16 C 0.102 3.898 17 N -0.857 5.857 18 Si 0.852 3.148 19 H -0.261 1.261 20 H -0.265 1.265 21 H -0.236 1.236 22 S 0.232 5.768 23 C -0.131 4.131 24 C -0.150 4.150 25 H 0.042 0.958 26 H 0.089 0.911 27 H 0.041 0.959 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.414 0.586 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.276 0.724 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.346 16.775 7.754 21.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C 0.027 3.973 4 C -0.161 4.161 5 C 0.334 3.666 6 O -0.362 6.362 7 N -0.262 5.262 8 C -0.174 4.174 9 N -0.205 5.205 10 C -0.111 4.111 11 C -0.122 4.122 12 C -0.476 4.476 13 S 0.300 5.700 14 C -0.693 4.693 15 H 0.122 0.878 16 C -0.109 4.109 17 N -0.491 5.491 18 Si 0.675 3.325 19 H -0.186 1.186 20 H -0.190 1.190 21 H -0.160 1.160 22 S 0.478 5.522 23 C -0.168 4.168 24 C -0.187 4.187 25 H 0.061 0.939 26 H 0.107 0.893 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.251 0.749 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.125 0.875 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.509 15.198 7.440 19.410 hybrid contribution -0.491 0.622 -0.203 0.818 sum -10.000 15.820 7.237 20.066 Atomic orbital electron populations 1.22778 0.80635 1.03260 0.99838 1.88025 1.19825 1.26722 1.95331 1.21884 0.88693 0.85661 1.01028 1.21170 0.94153 1.05937 0.94879 1.19491 0.79465 0.85349 0.82310 1.90720 1.40616 1.21451 1.83434 1.42345 1.59999 1.20438 1.03402 1.23984 1.07008 0.97644 0.88785 1.65867 1.21770 1.35016 0.97804 1.19107 1.05751 0.90354 0.95863 1.20141 1.02102 1.01272 0.88698 1.28152 1.11738 1.04559 1.03122 1.82431 1.67737 1.08269 1.11606 1.22667 1.47771 1.03359 0.95508 0.87756 1.24737 0.93298 0.94553 0.98353 1.70014 1.38162 1.07847 1.33069 0.86817 0.81207 0.79946 0.84481 1.18579 1.18998 1.15981 1.86215 1.57186 1.10298 0.98537 1.23060 1.02637 0.98518 0.92581 1.23188 1.01113 0.92126 1.02294 0.93940 0.89265 0.94023 0.92376 0.91838 0.74933 0.91739 0.91745 0.91096 0.91340 0.87374 0.87112 0.87469 0.87277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.70 10.55 -35.23 -0.37 -5.07 16 3 C 0.10 0.96 5.77 37.16 0.21 1.17 16 4 C -0.16 -1.69 2.19 -155.66 -0.34 -2.03 16 5 C 0.55 8.53 6.90 -10.99 -0.08 8.46 16 6 O -0.49 -9.80 14.24 5.56 0.08 -9.72 16 7 N -0.61 -9.37 5.40 -11.78 -0.06 -9.43 16 8 C 0.20 3.85 8.39 -87.19 -0.73 3.12 16 9 N -0.48 -9.65 10.55 -9.78 -0.10 -9.75 16 10 C 0.03 0.65 6.73 -83.96 -0.57 0.08 16 11 C -0.06 -1.06 10.02 36.00 0.36 -0.70 16 12 C -0.24 -5.55 6.67 29.46 0.20 -5.35 16 13 S 0.05 1.27 18.70 -107.50 -2.01 -0.74 16 14 C -0.54 -15.44 9.80 30.80 0.30 -15.14 16 15 H 0.10 3.18 6.21 -52.49 -0.33 2.86 16 16 C 0.10 2.86 5.49 -17.49 -0.10 2.76 16 17 N -0.86 -25.09 13.98 55.47 0.78 -24.32 16 18 Si 0.85 19.91 27.73 -169.99 -4.71 15.19 16 19 H -0.26 -5.98 7.11 56.52 0.40 -5.58 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 21 H -0.24 -5.27 6.73 56.52 0.38 -4.89 16 22 S 0.23 5.34 18.37 -107.50 -1.97 3.37 16 23 C -0.13 -1.23 9.77 -26.69 -0.26 -1.49 16 24 C -0.15 -1.10 9.95 -26.69 -0.27 -1.37 16 25 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 27 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.41 8.11 -51.93 -0.42 -0.01 16 30 H 0.41 4.81 8.82 -40.82 -0.36 4.45 16 31 H 0.06 1.01 8.14 -51.92 -0.42 0.58 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 1.17 7.38 -51.93 -0.38 0.79 16 34 H 0.28 7.41 8.32 -40.82 -0.34 7.08 16 35 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.11 1.22 8.00 -51.93 -0.42 0.81 16 37 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 353.28 15.07 5.32 5.32 Total: -1.00 -34.19 353.28 -8.07 -42.27 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -4.87 Total: 1.97 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -0.15 Total: -9.09 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: 0.61 Total: -43.50 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.29 Total: -14.79 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.71 Total: 15.19 kcal Atomic # 16 Polarization: 6.62 SS G_CDS: -3.99 Total: 2.63 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.19 -8.07 -42.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353111053.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.233 kcal (2) G-P(sol) polarization free energy of solvation -34.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds