Wall clock time and date at job start Tue Mar 31 2020 14:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99848 * 2 1 4 4 C 1.53001 * 109.47058 * 180.02562 * 3 2 1 5 5 C 1.50700 * 115.55082 * 60.67486 * 4 3 2 6 6 O 1.21279 * 119.99681 * 245.62554 * 5 4 3 7 7 N 1.34773 * 119.99689 * 65.62915 * 5 4 3 8 8 C 1.38896 * 119.99499 * 185.08892 * 7 5 4 9 9 N 1.29947 * 125.36392 * 179.72503 * 8 7 5 10 10 C 1.31595 * 117.13751 * 179.77292 * 9 8 7 11 11 C 1.50697 * 122.22678 * 180.27108 * 10 9 8 12 12 C 1.34651 * 115.53707 * 0.51605 * 10 9 8 13 13 S 1.76199 * 125.92844 * 179.74832 * 12 10 9 14 14 C 1.76197 * 100.00057 * 180.02562 * 13 12 10 15 15 H 1.08002 * 119.99874 * 0.02562 * 14 13 12 16 16 C 1.38427 * 120.00439 * 180.02562 * 14 13 12 17 17 N 1.31810 * 120.00453 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99741 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47388 * 89.99813 * 18 16 14 20 20 H 1.48498 * 109.47311 * 210.00124 * 18 16 14 21 21 H 1.48510 * 109.47180 * 330.00011 * 18 16 14 22 22 S 1.76137 * 125.36807 * 0.02562 * 8 7 5 23 23 C 1.52997 * 117.49704 * 275.00234 * 4 3 2 24 24 C 1.53008 * 117.49608 * 206.34323 * 4 3 2 25 25 H 1.09003 * 109.47172 * 60.00014 * 1 2 3 26 26 H 1.09008 * 109.47070 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47309 * 299.99725 * 1 2 3 28 28 H 1.09005 * 109.47307 * 300.00026 * 3 2 1 29 29 H 1.09000 * 109.47047 * 59.99982 * 3 2 1 30 30 H 0.96996 * 120.00842 * 5.08861 * 7 5 4 31 31 H 1.09008 * 109.46948 * 270.25910 * 11 10 9 32 32 H 1.08994 * 109.47967 * 30.26480 * 11 10 9 33 33 H 1.09006 * 109.47184 * 150.26754 * 11 10 9 34 34 H 0.97000 * 119.99837 * 179.97438 * 17 16 14 35 35 H 1.09005 * 117.49788 * 0.02562 * 23 4 3 36 36 H 1.08996 * 117.50331 * 145.02427 * 23 4 3 37 37 H 1.08991 * 117.49638 * 214.97748 * 24 4 3 38 38 H 1.09001 * 117.49490 * 359.97438 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1303 0.4698 -1.1864 6 8 4.7012 -0.5891 -1.0322 7 7 4.0280 1.0072 -2.4181 8 6 4.4819 0.3001 -3.5241 9 7 4.4303 0.7145 -4.7547 10 6 4.9129 -0.0882 -5.6790 11 6 4.9165 0.2794 -7.1405 12 6 5.3985 -1.2621 -5.2325 13 16 6.0998 -2.5362 -6.2271 14 6 6.4933 -3.7166 -4.9796 15 1 6.2723 -3.5022 -3.9444 16 6 7.0856 -4.9188 -5.3262 17 7 7.3795 -5.8020 -4.3929 18 14 7.4685 -5.2894 -7.1166 19 1 8.8352 -4.8075 -7.4406 20 1 7.3929 -6.7546 -7.3460 21 1 6.4816 -4.6005 -7.9867 22 16 5.2113 -1.3025 -3.4806 23 6 4.2308 1.0107 1.3510 24 6 4.3359 2.3413 0.6015 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6885 1.8465 -0.8900 29 1 1.6885 1.8464 0.8900 30 1 3.6374 1.8877 -2.5323 31 1 3.9885 -0.0579 -7.6023 32 1 5.0010 1.3612 -7.2429 33 1 5.7626 -0.1994 -7.6335 34 1 7.7943 -6.6445 -4.6359 35 1 3.6016 0.9819 2.2407 36 1 5.1189 0.3795 1.3826 37 1 5.2929 2.5848 0.1403 38 1 3.7758 3.1884 0.9977 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353111053.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:23 Heat of formation + Delta-G solvation = -37.558499 kcal Electronic energy + Delta-G solvation = -22837.532869 eV Core-core repulsion = 19319.174550 eV Total energy + Delta-G solvation = -3518.358318 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.79600 -40.35359 -39.02142 -37.35640 -36.20646 -34.83579 -32.14433 -29.34327 -28.82140 -27.92607 -26.94496 -26.01725 -23.71260 -23.35641 -22.23664 -20.77371 -19.60493 -19.20118 -18.28186 -17.51742 -17.29745 -17.24273 -16.99542 -16.90618 -16.27339 -15.96334 -15.58735 -15.34002 -15.01790 -14.74167 -14.51611 -13.60018 -13.55377 -13.46864 -13.41853 -13.32824 -13.16980 -13.12016 -12.56847 -12.39539 -12.29647 -12.17524 -11.93831 -11.75033 -11.45024 -11.33160 -11.24145 -10.87400 -10.64418 -10.61460 -10.58031 -9.65080 -8.62637 -8.55067 -6.36151 -0.32605 0.12089 0.73752 1.03996 1.11576 1.28280 1.38720 1.46925 1.63024 1.93434 2.13376 2.31986 2.49113 2.76072 2.97643 3.35627 3.56622 3.70885 3.80774 3.95225 4.33644 4.35005 4.44843 4.50221 4.59159 4.64426 4.68959 4.72918 4.83948 4.84482 4.92095 4.94240 5.02492 5.15075 5.42478 5.59654 5.88608 6.06694 6.19977 6.72148 6.75329 6.78977 8.50358 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.016505 B = 0.003477 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.083790 B = 8050.652894 C = 8712.954838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.425 6.425 3 C 0.102 3.898 4 C -0.174 4.174 5 C 0.545 3.455 6 O -0.539 6.539 7 N -0.599 5.599 8 C 0.234 3.766 9 N -0.483 5.483 10 C 0.052 3.948 11 C -0.064 4.064 12 C -0.276 4.276 13 S 0.065 5.935 14 C -0.570 4.570 15 H 0.065 0.935 16 C 0.048 3.952 17 N -0.908 5.908 18 Si 0.916 3.084 19 H -0.251 1.251 20 H -0.253 1.253 21 H -0.218 1.218 22 S 0.155 5.845 23 C -0.143 4.143 24 C -0.112 4.112 25 H 0.050 0.950 26 H 0.081 0.919 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.101 0.899 30 H 0.436 0.564 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.282 0.718 35 H 0.131 0.869 36 H 0.082 0.918 37 H 0.104 0.896 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.991 20.455 7.028 24.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.344 6.344 3 C 0.026 3.974 4 C -0.178 4.178 5 C 0.333 3.667 6 O -0.414 6.414 7 N -0.250 5.250 8 C -0.138 4.138 9 N -0.205 5.205 10 C -0.089 4.089 11 C -0.123 4.123 12 C -0.511 4.511 13 S 0.310 5.690 14 C -0.718 4.718 15 H 0.083 0.917 16 C -0.159 4.159 17 N -0.544 5.544 18 Si 0.734 3.266 19 H -0.175 1.175 20 H -0.177 1.177 21 H -0.142 1.142 22 S 0.401 5.599 23 C -0.180 4.180 24 C -0.149 4.149 25 H 0.069 0.931 26 H 0.100 0.900 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.119 0.881 30 H 0.277 0.723 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.149 0.851 36 H 0.101 0.899 37 H 0.123 0.877 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -11.191 18.947 6.739 23.014 hybrid contribution -0.117 -0.256 0.269 0.390 sum -11.308 18.691 7.008 22.942 Atomic orbital electron populations 1.22907 0.79102 1.03440 1.01430 1.87972 1.21752 1.29021 1.95702 1.22128 0.86907 0.84856 1.03511 1.21272 0.95543 1.08221 0.92723 1.20644 0.78028 0.84813 0.83244 1.90718 1.42677 1.23910 1.84061 1.42521 1.59296 1.21004 1.02220 1.24249 1.03755 0.95914 0.89918 1.66101 1.22637 1.34298 0.97465 1.19887 1.02199 0.88923 0.97876 1.20326 1.03234 1.03096 0.85694 1.28105 1.14842 1.05669 1.02440 1.81814 1.69694 1.07656 1.09876 1.22859 1.48285 1.05237 0.95431 0.91677 1.25753 0.92724 0.94007 1.03366 1.70125 1.39761 1.08724 1.35768 0.85877 0.81690 0.80506 0.78486 1.17547 1.17690 1.14158 1.86626 1.59168 1.13738 1.00331 1.23157 1.01962 1.00017 0.92900 1.23394 1.00498 0.91879 0.99114 0.93138 0.89996 0.91527 0.90922 0.88118 0.72287 0.89821 0.89163 0.90728 0.90837 0.85072 0.89933 0.87745 0.82971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.66 16 2 O -0.42 -9.91 10.55 -148.98 -1.57 -11.48 16 3 C 0.10 1.54 5.77 71.98 0.42 1.96 16 4 C -0.17 -3.36 2.19 -52.93 -0.12 -3.47 16 5 C 0.55 16.79 6.90 87.66 0.60 17.39 16 6 O -0.54 -22.60 14.24 -3.03 -0.04 -22.64 16 7 N -0.60 -17.52 5.40 -309.58 -1.67 -19.19 16 8 C 0.23 9.09 8.39 179.15 1.50 10.59 16 9 N -0.48 -18.46 10.55 -184.87 -1.95 -20.41 16 10 C 0.05 2.11 6.73 41.77 0.28 2.39 16 11 C -0.06 -1.98 10.02 71.24 0.71 -1.26 16 12 C -0.28 -12.99 6.67 67.00 0.45 -12.55 16 13 S 0.06 3.19 18.70 -56.49 -1.06 2.13 16 14 C -0.57 -34.04 9.80 67.87 0.67 -33.37 16 15 H 0.07 4.31 6.21 -2.91 -0.02 4.29 16 16 C 0.05 2.81 5.49 84.74 0.47 3.27 16 17 N -0.91 -55.85 13.98 21.59 0.30 -55.55 16 18 Si 0.92 41.53 27.73 68.60 1.90 43.43 16 19 H -0.25 -10.93 7.11 99.48 0.71 -10.23 16 20 H -0.25 -10.84 7.11 99.48 0.71 -10.14 16 21 H -0.22 -9.20 6.73 99.48 0.67 -8.53 16 22 S 0.16 7.53 18.37 -56.49 -1.04 6.49 16 23 C -0.14 -2.45 9.77 30.62 0.30 -2.15 16 24 C -0.11 -1.22 9.95 30.62 0.30 -0.92 16 25 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 27 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.10 0.79 8.11 -2.39 -0.02 0.77 16 30 H 0.44 8.89 8.82 -92.71 -0.82 8.07 16 31 H 0.08 2.32 8.14 -2.38 -0.02 2.31 16 32 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.07 2.28 7.38 -2.38 -0.02 2.26 16 34 H 0.28 15.79 8.32 -92.71 -0.77 15.02 16 35 H 0.13 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.08 1.89 8.00 -2.39 -0.02 1.87 16 37 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.15 0.44 8.14 -2.39 -0.02 0.42 16 Total: -1.00 -80.95 353.28 1.95 -79.00 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.25 Total: 14.68 kcal Atomic # 6 Polarization: -23.29 SS G_CDS: 6.83 Total: -16.45 kcal Atomic # 7 Polarization: -91.84 SS G_CDS: -3.32 Total: -95.16 kcal Atomic # 8 Polarization: -32.51 SS G_CDS: -1.62 Total: -34.13 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 1.90 Total: 43.43 kcal Atomic # 16 Polarization: 10.72 SS G_CDS: -2.09 Total: 8.62 kcal Total: -80.95 1.95 -79.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353111053.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.443 kcal (2) G-P(sol) polarization free energy of solvation -80.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds