Wall clock time and date at job start Tue Mar 31 2020 15:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47270 * 98.65478 * 3 2 1 5 5 C 1.36870 * 119.99863 * 264.62636 * 4 3 2 6 6 H 1.08007 * 120.00106 * 130.83161 * 5 4 3 7 7 C 1.39048 * 120.00626 * 310.83320 * 5 4 3 8 8 N 1.31356 * 120.00752 * 170.04255 * 7 5 4 9 9 Si 1.86806 * 119.99445 * 350.03983 * 7 5 4 10 10 H 1.48503 * 109.47064 * 95.23667 * 9 7 5 11 11 H 1.48497 * 109.47022 * 215.23167 * 9 7 5 12 12 H 1.48499 * 109.47247 * 335.23649 * 9 7 5 13 13 C 1.34770 * 120.00042 * 84.62893 * 4 3 2 14 14 O 1.21597 * 120.00188 * 2.09000 * 13 4 3 15 15 C 1.47728 * 120.00351 * 182.09355 * 13 4 3 16 16 C 1.39648 * 120.15342 * 137.93403 * 15 13 4 17 17 C 1.37933 * 119.84754 * 180.02562 * 16 15 13 18 18 C 1.38379 * 120.14981 * 0.02562 * 17 16 15 19 19 C 1.50697 * 119.84591 * 179.97438 * 18 17 16 20 20 O 1.42900 * 109.46960 * 90.00146 * 19 18 17 21 21 C 1.42903 * 114.00272 * 179.97438 * 20 19 18 22 22 F 1.39899 * 109.47207 * 59.99959 * 21 20 19 23 23 F 1.39894 * 109.47249 * 180.02562 * 21 20 19 24 24 F 1.39899 * 109.46967 * 300.00009 * 21 20 19 25 25 C 1.38374 * 120.30621 * 0.25566 * 18 17 16 26 26 C 1.37935 * 120.15038 * 359.48674 * 25 18 17 27 27 H 1.09008 * 109.46994 * 338.65130 * 3 2 1 28 28 H 1.08995 * 109.47070 * 218.65970 * 3 2 1 29 29 H 0.96998 * 120.00464 * 180.02562 * 8 7 5 30 30 H 1.07997 * 120.07553 * 0.02562 * 16 15 13 31 31 H 1.08003 * 119.92768 * 179.97438 * 17 16 15 32 32 H 1.08998 * 109.47838 * 330.00497 * 19 18 17 33 33 H 1.08999 * 109.47649 * 210.00026 * 19 18 17 34 34 H 1.08003 * 119.92571 * 179.74273 * 25 18 17 35 35 H 1.07995 * 120.07544 * 180.25585 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0963 0.2087 -1.3654 5 6 3.4295 -0.8663 -2.1443 6 1 3.0461 -0.9434 -3.1510 7 6 4.2617 -1.8594 -1.6395 8 7 4.4256 -2.9801 -2.3048 9 14 5.1467 -1.5997 -0.0150 10 1 4.3535 -2.2074 1.0835 11 1 6.4849 -2.2407 -0.0724 12 1 5.3051 -0.1445 0.2353 13 6 3.2173 1.4586 -1.8546 14 8 2.9576 2.4151 -1.1502 15 6 3.6655 1.6668 -3.2468 16 6 3.0456 2.6290 -4.0469 17 6 3.4688 2.8177 -5.3460 18 6 4.5048 2.0559 -5.8571 19 6 4.9613 2.2675 -7.2776 20 8 5.9922 3.2567 -7.3043 21 6 6.4985 3.5336 -8.6117 22 9 5.4596 3.9980 -9.4254 23 9 7.4976 4.5092 -8.5279 24 9 7.0343 2.3641 -9.1616 25 6 5.1197 1.0968 -5.0718 26 6 4.7101 0.9012 -3.7693 27 1 2.9718 -0.9564 0.3741 28 1 2.9710 0.8033 0.6419 29 1 5.0058 -3.6729 -1.9524 30 1 2.2367 3.2239 -3.6493 31 1 2.9900 3.5612 -5.9661 32 1 4.1199 2.6033 -7.8836 33 1 5.3468 1.3302 -7.6789 34 1 5.9249 0.5028 -5.4783 35 1 5.1936 0.1552 -3.1561 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355480039.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:29 Heat of formation + Delta-G solvation = -174.547006 kcal Electronic energy + Delta-G solvation = -27027.675868 eV Core-core repulsion = 22383.323720 eV Total energy + Delta-G solvation = -4644.352149 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.36463 -48.11173 -48.05531 -39.91203 -38.82065 -37.56400 -36.09097 -34.99717 -32.27630 -32.06728 -30.67428 -28.47030 -26.79949 -25.29617 -24.77393 -22.32798 -21.94857 -19.66378 -19.59700 -19.14546 -18.96422 -18.68396 -17.40688 -16.19507 -15.88564 -15.77870 -15.49538 -15.02736 -14.83517 -14.80742 -14.73767 -14.48734 -14.27109 -14.21153 -14.17044 -13.87853 -13.72898 -13.62310 -13.13936 -13.00729 -12.79704 -12.60627 -12.41822 -12.02845 -11.90508 -11.52391 -11.29373 -11.17021 -11.11230 -10.66567 -10.55493 -10.26220 -9.59240 -9.05391 -8.61363 -8.49857 -8.18327 -6.70247 -4.50864 1.06258 1.77232 1.90323 2.83589 2.92246 3.01014 3.03214 3.06887 3.31469 3.42909 3.84424 3.86673 3.94192 4.11130 4.30713 4.50651 4.61840 4.71880 4.81209 4.93054 5.27427 5.33306 5.46318 5.63884 5.77996 5.82677 5.90830 5.92697 6.17486 6.37908 6.62671 6.77475 6.92656 6.98622 7.25509 7.71878 7.99896 8.04932 8.60127 8.90905 9.23367 10.37385 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.017985 B = 0.003107 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.468244 B = 9009.302218 C = 9864.270987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.215 3.785 3 C 0.188 3.812 4 N -0.458 5.458 5 C -0.354 4.354 6 H 0.109 0.891 7 C 0.073 3.927 8 N -0.851 5.851 9 Si 0.861 3.139 10 H -0.266 1.266 11 H -0.278 1.278 12 H -0.251 1.251 13 C 0.536 3.464 14 O -0.575 6.575 15 C -0.080 4.080 16 C -0.083 4.083 17 C -0.110 4.110 18 C -0.097 4.097 19 C 0.101 3.899 20 O -0.365 6.365 21 C 0.593 3.407 22 F -0.178 7.178 23 F -0.144 7.144 24 F -0.177 7.177 25 C -0.107 4.107 26 C -0.050 4.050 27 H 0.110 0.890 28 H 0.115 0.885 29 H 0.280 0.720 30 H 0.127 0.873 31 H 0.123 0.877 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.126 0.874 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.130 7.406 -9.896 13.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.104 4.104 3 C 0.062 3.938 4 N -0.180 5.180 5 C -0.481 4.481 6 H 0.126 0.874 7 C -0.137 4.137 8 N -0.484 5.484 9 Si 0.686 3.314 10 H -0.192 1.192 11 H -0.204 1.204 12 H -0.175 1.175 13 C 0.326 3.674 14 O -0.457 6.457 15 C -0.083 4.083 16 C -0.102 4.102 17 C -0.128 4.128 18 C -0.097 4.097 19 C 0.027 3.973 20 O -0.290 6.290 21 C 0.501 3.499 22 F -0.161 7.161 23 F -0.126 7.126 24 F -0.159 7.159 25 C -0.125 4.125 26 C -0.068 4.068 27 H 0.127 0.873 28 H 0.132 0.868 29 H 0.091 0.909 30 H 0.145 0.855 31 H 0.141 0.859 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.144 0.856 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 4.485 7.745 -9.424 12.997 hybrid contribution 0.899 -0.349 0.364 1.031 sum 5.384 7.395 -9.060 12.875 Atomic orbital electron populations 1.81028 1.13268 1.10081 1.08361 1.29891 0.95704 0.91965 0.92834 1.19354 0.80957 1.04199 0.89283 1.43468 1.57121 1.05885 1.11484 1.19095 1.30127 0.99359 0.99482 0.87401 1.25490 0.95345 0.94811 0.98064 1.69622 1.35055 1.04729 1.38967 0.87077 0.80374 0.80506 0.83427 1.19237 1.20370 1.17484 1.18499 0.78957 0.82732 0.87231 1.90698 1.53872 1.41114 1.60061 1.19873 0.97564 0.96799 0.94036 1.21107 0.99391 0.96676 0.93068 1.20790 0.97351 0.99165 0.95472 1.19296 0.98058 0.98807 0.93539 1.21764 0.88512 0.90299 0.96735 1.88461 1.56296 1.61499 1.22703 1.19583 0.75902 0.74965 0.79438 1.93251 1.59263 1.89064 1.74486 1.93260 1.60717 1.62640 1.95979 1.93260 1.86737 1.49512 1.86425 1.21016 0.99537 0.97727 0.94236 1.21765 0.94675 0.95678 0.94673 0.87265 0.86753 0.90904 0.85520 0.85924 0.90150 0.89897 0.85636 0.82830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.63 18.54 42.15 0.78 -8.85 16 2 C 0.21 4.34 15.71 -20.76 -0.33 4.02 16 3 C 0.19 3.58 4.28 -6.83 -0.03 3.55 16 4 N -0.46 -9.67 1.99 -119.06 -0.24 -9.91 16 5 C -0.35 -7.91 6.61 -15.00 -0.10 -8.01 16 6 H 0.11 2.65 7.46 -52.48 -0.39 2.26 16 7 C 0.07 1.63 5.17 -17.45 -0.09 1.54 16 8 N -0.85 -20.49 13.95 55.50 0.77 -19.72 16 9 Si 0.86 16.80 24.87 -169.99 -4.23 12.57 16 10 H -0.27 -4.96 6.91 56.52 0.39 -4.57 16 11 H -0.28 -5.51 7.11 56.52 0.40 -5.10 16 12 H -0.25 -4.81 7.01 56.52 0.40 -4.41 16 13 C 0.54 11.36 7.23 -12.39 -0.09 11.27 16 14 O -0.57 -13.12 16.61 5.28 0.09 -13.03 16 15 C -0.08 -1.51 5.29 -104.97 -0.56 -2.06 16 16 C -0.08 -1.38 9.66 -39.17 -0.38 -1.76 16 17 C -0.11 -1.53 9.68 -39.64 -0.38 -1.91 16 18 C -0.10 -1.32 5.52 -104.52 -0.58 -1.89 16 19 C 0.10 1.09 5.78 36.00 0.21 1.30 16 20 O -0.37 -4.34 10.56 -35.23 -0.37 -4.71 16 21 C 0.59 6.17 3.75 101.05 0.38 6.55 16 22 F -0.18 -1.78 16.86 2.25 0.04 -1.74 16 23 F -0.14 -1.55 17.53 2.25 0.04 -1.51 16 24 F -0.18 -1.81 16.86 2.25 0.04 -1.77 16 25 C -0.11 -1.60 9.68 -39.64 -0.38 -1.99 16 26 C -0.05 -0.88 8.09 -39.17 -0.32 -1.19 16 27 H 0.11 1.99 4.27 -51.92 -0.22 1.76 16 28 H 0.11 1.97 7.56 -51.93 -0.39 1.57 16 29 H 0.28 6.33 8.31 -40.82 -0.34 5.99 16 30 H 0.13 2.02 8.06 -52.49 -0.42 1.60 16 31 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 32 H 0.08 0.72 7.67 -51.93 -0.40 0.32 16 33 H 0.08 0.78 7.67 -51.93 -0.40 0.38 16 34 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 35 H 0.15 2.91 6.26 -52.49 -0.33 2.58 16 LS Contribution 328.60 15.07 4.95 4.95 Total: -1.00 -26.46 328.60 -3.32 -29.78 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -2.55 Total: 4.53 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: -2.64 Total: 9.41 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 1.32 Total: -38.47 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.28 Total: -17.75 kcal Atomic # 9 Polarization: -5.14 SS G_CDS: 0.12 Total: -5.02 kcal Atomic # 14 Polarization: 16.80 SS G_CDS: -4.23 Total: 12.57 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -26.46 -3.32 -29.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355480039.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.765 kcal (2) G-P(sol) polarization free energy of solvation -26.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds