Wall clock time and date at job start Tue Mar 31 2020 15:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47270 * 98.65478 * 3 2 1 5 5 C 1.36870 * 119.99863 * 264.62636 * 4 3 2 6 6 H 1.08007 * 120.00106 * 130.83161 * 5 4 3 7 7 C 1.39048 * 120.00626 * 310.83320 * 5 4 3 8 8 N 1.31356 * 120.00752 * 170.04255 * 7 5 4 9 9 Si 1.86806 * 119.99445 * 350.03983 * 7 5 4 10 10 H 1.48503 * 109.47064 * 95.23667 * 9 7 5 11 11 H 1.48497 * 109.47022 * 215.23167 * 9 7 5 12 12 H 1.48499 * 109.47247 * 335.23649 * 9 7 5 13 13 C 1.34770 * 120.00042 * 84.62893 * 4 3 2 14 14 O 1.21597 * 120.00188 * 2.09000 * 13 4 3 15 15 C 1.47728 * 120.00351 * 182.09355 * 13 4 3 16 16 C 1.39648 * 120.15342 * 137.93403 * 15 13 4 17 17 C 1.37933 * 119.84754 * 180.02562 * 16 15 13 18 18 C 1.38379 * 120.14981 * 0.02562 * 17 16 15 19 19 C 1.50697 * 119.84591 * 179.97438 * 18 17 16 20 20 O 1.42900 * 109.46960 * 90.00146 * 19 18 17 21 21 C 1.42903 * 114.00272 * 179.97438 * 20 19 18 22 22 F 1.39899 * 109.47207 * 59.99959 * 21 20 19 23 23 F 1.39894 * 109.47249 * 180.02562 * 21 20 19 24 24 F 1.39899 * 109.46967 * 300.00009 * 21 20 19 25 25 C 1.38374 * 120.30621 * 0.25566 * 18 17 16 26 26 C 1.37935 * 120.15038 * 359.48674 * 25 18 17 27 27 H 1.09008 * 109.46994 * 338.65130 * 3 2 1 28 28 H 1.08995 * 109.47070 * 218.65970 * 3 2 1 29 29 H 0.96998 * 120.00464 * 180.02562 * 8 7 5 30 30 H 1.07997 * 120.07553 * 0.02562 * 16 15 13 31 31 H 1.08003 * 119.92768 * 179.97438 * 17 16 15 32 32 H 1.08998 * 109.47838 * 330.00497 * 19 18 17 33 33 H 1.08999 * 109.47649 * 210.00026 * 19 18 17 34 34 H 1.08003 * 119.92571 * 179.74273 * 25 18 17 35 35 H 1.07995 * 120.07544 * 180.25585 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0963 0.2087 -1.3654 5 6 3.4295 -0.8663 -2.1443 6 1 3.0461 -0.9434 -3.1510 7 6 4.2617 -1.8594 -1.6395 8 7 4.4256 -2.9801 -2.3048 9 14 5.1467 -1.5997 -0.0150 10 1 4.3535 -2.2074 1.0835 11 1 6.4849 -2.2407 -0.0724 12 1 5.3051 -0.1445 0.2353 13 6 3.2173 1.4586 -1.8546 14 8 2.9576 2.4151 -1.1502 15 6 3.6655 1.6668 -3.2468 16 6 3.0456 2.6290 -4.0469 17 6 3.4688 2.8177 -5.3460 18 6 4.5048 2.0559 -5.8571 19 6 4.9613 2.2675 -7.2776 20 8 5.9922 3.2567 -7.3043 21 6 6.4985 3.5336 -8.6117 22 9 5.4596 3.9980 -9.4254 23 9 7.4976 4.5092 -8.5279 24 9 7.0343 2.3641 -9.1616 25 6 5.1197 1.0968 -5.0718 26 6 4.7101 0.9012 -3.7693 27 1 2.9718 -0.9564 0.3741 28 1 2.9710 0.8033 0.6419 29 1 5.0058 -3.6729 -1.9524 30 1 2.2367 3.2239 -3.6493 31 1 2.9900 3.5612 -5.9661 32 1 4.1199 2.6033 -7.8836 33 1 5.3468 1.3302 -7.6789 34 1 5.9249 0.5028 -5.4783 35 1 5.1936 0.1552 -3.1561 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355480039.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:28 Heat of formation + Delta-G solvation = -189.127218 kcal Electronic energy + Delta-G solvation = -27028.308114 eV Core-core repulsion = 22383.323720 eV Total energy + Delta-G solvation = -4644.984394 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.16594 -48.92319 -48.84372 -41.38318 -40.00751 -38.67624 -37.74479 -36.69361 -34.01716 -33.28123 -31.91293 -29.91719 -28.01737 -26.81058 -25.78577 -23.56732 -23.21424 -21.17441 -20.43831 -20.34497 -19.94575 -19.80860 -18.93673 -17.70411 -17.37185 -17.01334 -16.62107 -16.28441 -15.94129 -15.85789 -15.62228 -15.56079 -15.38709 -15.28586 -15.06093 -15.00933 -14.93811 -14.85918 -14.54352 -14.38367 -14.26512 -14.01030 -13.92969 -13.55086 -13.32596 -13.10443 -12.82727 -12.44120 -12.19365 -12.10506 -11.85352 -11.71729 -11.25536 -10.70789 -9.97176 -9.82372 -9.75580 -8.44575 -6.29096 -0.14275 0.53870 0.97637 1.28305 1.37405 1.43113 1.51738 1.69406 1.80933 2.17104 2.23014 2.62388 2.82230 2.94585 3.01903 3.14881 3.18639 3.63623 3.81300 3.95429 4.06239 4.12571 4.19814 4.24141 4.34582 4.53423 4.71153 4.92628 5.07270 5.16427 5.31775 5.38727 5.53887 5.62054 5.99658 6.01889 6.17440 6.41943 6.88484 7.17977 7.53688 8.66075 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.017985 B = 0.003107 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.468244 B = 9009.302218 C = 9864.270987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C 0.226 3.774 3 C 0.185 3.815 4 N -0.465 5.465 5 C -0.344 4.344 6 H 0.078 0.922 7 C 0.043 3.957 8 N -0.890 5.890 9 Si 0.905 3.095 10 H -0.246 1.246 11 H -0.281 1.281 12 H -0.246 1.246 13 C 0.532 3.468 14 O -0.596 6.596 15 C -0.113 4.113 16 C -0.092 4.092 17 C -0.101 4.101 18 C -0.087 4.087 19 C 0.099 3.901 20 O -0.380 6.380 21 C 0.600 3.400 22 F -0.173 7.173 23 F -0.147 7.147 24 F -0.175 7.175 25 C -0.109 4.109 26 C -0.063 4.063 27 H 0.122 0.878 28 H 0.137 0.863 29 H 0.283 0.717 30 H 0.127 0.873 31 H 0.157 0.843 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.145 0.855 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.741 8.274 -10.738 15.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.092 4.092 3 C 0.059 3.941 4 N -0.186 5.186 5 C -0.471 4.471 6 H 0.095 0.905 7 C -0.164 4.164 8 N -0.525 5.525 9 Si 0.728 3.272 10 H -0.171 1.171 11 H -0.207 1.207 12 H -0.169 1.169 13 C 0.324 3.676 14 O -0.480 6.480 15 C -0.116 4.116 16 C -0.111 4.111 17 C -0.119 4.119 18 C -0.087 4.087 19 C 0.026 3.974 20 O -0.304 6.304 21 C 0.509 3.491 22 F -0.156 7.156 23 F -0.129 7.129 24 F -0.157 7.157 25 C -0.127 4.127 26 C -0.082 4.082 27 H 0.139 0.861 28 H 0.155 0.845 29 H 0.094 0.906 30 H 0.145 0.855 31 H 0.175 0.825 32 H 0.124 0.876 33 H 0.117 0.883 34 H 0.162 0.838 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.084 8.614 -10.266 14.333 hybrid contribution 0.711 -0.555 0.488 1.025 sum 5.795 8.059 -9.778 13.933 Atomic orbital electron populations 1.81029 1.14004 1.11035 1.09091 1.30092 0.95872 0.91172 0.92108 1.19593 0.80207 1.05699 0.88568 1.43514 1.57388 1.05579 1.12169 1.18734 1.30147 0.99539 0.98690 0.90454 1.25950 0.95488 0.94187 1.00771 1.69699 1.36238 1.05720 1.40799 0.86367 0.79408 0.80772 0.80648 1.17056 1.20688 1.16881 1.18946 0.78152 0.82398 0.88136 1.90663 1.54888 1.41556 1.60904 1.19889 0.99235 0.98934 0.93523 1.21241 0.99508 0.96204 0.94141 1.21151 0.96928 0.99252 0.94571 1.19595 0.97037 0.97333 0.94772 1.21859 0.89430 0.91238 0.94894 1.88415 1.56623 1.61727 1.23641 1.19404 0.75836 0.74908 0.78978 1.93264 1.59030 1.89016 1.74255 1.93259 1.60872 1.62781 1.95965 1.93268 1.86725 1.49405 1.86319 1.21243 0.99950 0.98227 0.93241 1.21606 0.95008 0.95697 0.95856 0.86084 0.84548 0.90650 0.85476 0.82507 0.87617 0.88251 0.83773 0.84843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -20.15 18.54 20.01 0.37 -19.78 16 2 C 0.23 9.02 15.71 89.44 1.41 10.43 16 3 C 0.18 6.86 4.28 84.57 0.36 7.22 16 4 N -0.46 -19.72 1.99 -648.84 -1.29 -21.01 16 5 C -0.34 -15.70 6.61 84.10 0.56 -15.15 16 6 H 0.08 3.97 7.46 -2.91 -0.02 3.95 16 7 C 0.04 1.92 5.17 84.96 0.44 2.36 16 8 N -0.89 -43.51 13.95 21.68 0.30 -43.21 16 9 Si 0.91 33.75 24.87 68.60 1.71 35.45 16 10 H -0.25 -8.35 6.91 99.48 0.69 -7.67 16 11 H -0.28 -10.61 7.11 99.48 0.71 -9.90 16 12 H -0.25 -8.88 7.01 99.48 0.70 -8.18 16 13 C 0.53 22.83 7.23 86.75 0.63 23.46 16 14 O -0.60 -27.29 16.61 -4.02 -0.07 -27.36 16 15 C -0.11 -4.32 5.29 -20.09 -0.11 -4.43 16 16 C -0.09 -2.99 9.66 22.54 0.22 -2.77 16 17 C -0.10 -2.59 9.68 22.23 0.22 -2.38 16 18 C -0.09 -2.17 5.52 -19.80 -0.11 -2.28 16 19 C 0.10 1.81 5.78 71.24 0.41 2.23 16 20 O -0.38 -7.90 10.56 -148.98 -1.57 -9.48 16 21 C 0.60 10.91 3.75 113.37 0.43 11.33 16 22 F -0.17 -2.94 16.86 44.97 0.76 -2.18 16 23 F -0.15 -2.86 17.53 44.97 0.79 -2.07 16 24 F -0.17 -3.12 16.86 44.97 0.76 -2.36 16 25 C -0.11 -3.15 9.68 22.23 0.22 -2.93 16 26 C -0.06 -2.27 8.09 22.54 0.18 -2.08 16 27 H 0.12 4.20 4.27 -2.38 -0.01 4.19 16 28 H 0.14 4.48 7.56 -2.39 -0.02 4.46 16 29 H 0.28 12.93 8.31 -92.71 -0.77 12.16 16 30 H 0.13 4.02 8.06 -2.91 -0.02 4.00 16 31 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 32 H 0.11 1.44 7.67 -2.39 -0.02 1.42 16 33 H 0.10 1.52 7.67 -2.39 -0.02 1.51 16 34 H 0.14 3.54 8.06 -2.91 -0.02 3.51 16 35 H 0.13 5.25 6.26 -2.91 -0.02 5.23 16 Total: -1.00 -57.15 328.60 7.74 -49.40 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 1.15 Total: 17.58 kcal Atomic # 6 Polarization: 20.17 SS G_CDS: 4.84 Total: 25.01 kcal Atomic # 7 Polarization: -83.38 SS G_CDS: -0.62 Total: -84.00 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -1.64 Total: -36.83 kcal Atomic # 9 Polarization: -8.92 SS G_CDS: 2.30 Total: -6.62 kcal Atomic # 14 Polarization: 33.75 SS G_CDS: 1.71 Total: 35.45 kcal Total: -57.15 7.74 -49.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355480039.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.724 kcal (2) G-P(sol) polarization free energy of solvation -57.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds