Wall clock time and date at job start Tue Mar 31 2020 15:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46502 * 109.46783 * 216.46135 * 3 2 1 5 5 C 1.37097 * 119.99915 * 264.22846 * 4 3 2 6 6 H 1.07996 * 119.99735 * 197.72039 * 5 4 3 7 7 C 1.38946 * 120.00026 * 17.72654 * 5 4 3 8 8 N 1.31411 * 120.00179 * 21.39507 * 7 5 4 9 9 Si 1.86802 * 120.00181 * 201.39584 * 7 5 4 10 10 H 1.48501 * 109.47016 * 89.99714 * 9 7 5 11 11 H 1.48491 * 109.47447 * 209.99709 * 9 7 5 12 12 H 1.48499 * 109.46948 * 330.00388 * 9 7 5 13 13 C 1.34777 * 120.00165 * 84.23337 * 4 3 2 14 14 O 1.21291 * 120.00127 * 179.97438 * 13 4 3 15 15 C 1.50701 * 119.99915 * 359.97438 * 13 4 3 16 16 C 1.50702 * 109.47258 * 179.97438 * 15 13 4 17 17 C 1.33719 * 122.07536 * 125.00168 * 16 15 13 18 18 S 1.76248 * 108.21695 * 179.78249 * 17 16 15 19 19 C 1.76178 * 89.83936 * 0.30348 * 18 17 16 20 20 C 1.47869 * 125.47163 * 179.97438 * 19 18 17 21 21 C 1.39973 * 120.56114 * 359.69358 * 20 19 18 22 22 C 1.38358 * 118.29415 * 180.02562 * 21 20 19 23 23 C 1.38339 * 119.30731 * 0.02562 * 22 21 20 24 24 N 1.31912 * 121.07298 * 0.02562 * 23 22 21 25 25 C 1.31705 * 121.87464 * 359.65406 * 24 23 22 26 26 N 1.30224 * 109.05096 * 359.69273 * 19 18 17 27 27 H 1.09000 * 109.47673 * 96.46316 * 3 2 1 28 28 H 1.09005 * 109.47421 * 336.46046 * 3 2 1 29 29 H 0.96999 * 120.00271 * 180.02562 * 8 7 5 30 30 H 1.09011 * 109.46823 * 60.00469 * 15 13 4 31 31 H 1.09000 * 109.47546 * 300.00273 * 15 13 4 32 32 H 1.07999 * 125.88981 * 0.02562 * 17 16 15 33 33 H 1.08004 * 120.84980 * 0.02562 * 21 20 19 34 34 H 1.08010 * 120.34622 * 180.02562 * 22 21 20 35 35 H 1.08005 * 119.46279 * 179.97438 * 23 22 21 36 36 H 1.08003 * 119.71960 * 180.31654 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0957 1.1118 0.8209 5 6 3.4362 2.3017 0.2312 6 1 4.0522 3.0113 0.7636 7 6 2.9888 2.5947 -1.0512 8 7 1.9357 1.9766 -1.5369 9 14 3.8840 3.8673 -2.0848 10 1 4.9492 3.2013 -2.8768 11 1 2.9211 4.5245 -3.0045 12 1 4.4939 4.8877 -1.1948 13 6 3.2098 0.9641 2.1556 14 8 3.6141 1.8839 2.8352 15 6 2.8351 -0.3437 2.8038 16 6 3.0537 -0.2477 4.2918 17 6 2.0814 -0.5123 5.1709 18 16 2.7319 -0.2940 6.7943 19 6 4.2901 0.1532 6.1044 20 6 5.4963 0.5215 6.8763 21 6 5.4667 0.5433 8.2755 22 6 6.6221 0.8952 8.9505 23 6 7.7586 1.2119 8.2282 24 7 7.7569 1.1838 6.9093 25 6 6.6843 0.8492 6.2222 26 7 4.2105 0.1014 4.8056 27 1 2.9714 0.1165 -1.0211 28 1 2.9718 -0.9414 0.4104 29 1 1.6235 2.1809 -2.4323 30 1 3.4558 -1.1420 2.3966 31 1 1.7860 -0.5611 2.6036 32 1 1.0727 -0.8122 4.9280 33 1 4.5652 0.2918 8.8144 34 1 6.6365 0.9225 10.0302 35 1 8.6617 1.4874 8.7525 36 1 6.7233 0.8329 5.1430 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355683002.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:33 Heat of formation + Delta-G solvation = 93.435249 kcal Electronic energy + Delta-G solvation = -23927.802971 eV Core-core repulsion = 20311.973768 eV Total energy + Delta-G solvation = -3615.829203 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 2.87 seconds Orbital eigenvalues (eV) -40.38424 -39.66969 -38.38420 -35.74999 -34.34677 -33.49480 -32.29870 -31.86341 -30.52190 -28.13868 -27.33927 -25.52060 -24.56344 -23.77482 -22.23923 -19.89828 -19.06674 -18.02738 -17.69712 -17.12165 -16.51057 -16.28974 -16.14802 -15.92030 -14.91045 -14.54876 -14.40954 -14.11667 -13.94455 -13.61065 -13.48603 -13.28029 -13.09540 -12.98629 -12.54686 -12.25014 -12.03422 -11.83403 -11.53319 -11.38674 -11.16359 -11.13021 -10.57773 -10.39540 -10.36296 -10.27718 -9.86889 -9.74655 -9.40259 -9.24889 -9.16422 -8.62697 -8.19818 -8.02200 -6.49253 -3.97966 0.15078 1.04068 1.30555 1.39886 1.70498 2.97654 3.12147 3.24192 3.28572 3.56210 3.72039 3.78846 3.84193 3.95444 4.13359 4.35977 4.59683 4.67097 4.78797 4.83889 4.90923 4.94059 5.18631 5.19554 5.28575 5.39303 5.55832 5.69556 5.71665 5.81659 5.86150 5.91745 6.13161 6.28916 6.47342 6.50568 7.49081 7.77522 7.86964 7.93681 8.30384 8.70650 9.02618 9.20880 9.75763 10.57184 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.015253 B = 0.003371 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.210437 B = 8303.371581 C = 9815.560562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.245 3.755 3 C 0.220 3.780 4 N -0.446 5.446 5 C -0.310 4.310 6 H 0.108 0.892 7 C 0.031 3.969 8 N -0.880 5.880 9 Si 0.926 3.074 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.464 3.536 14 O -0.553 6.553 15 C -0.071 4.071 16 C 0.108 3.892 17 C -0.241 4.241 18 S 0.063 5.937 19 C 0.110 3.890 20 C -0.067 4.067 21 C -0.059 4.059 22 C -0.173 4.173 23 C 0.105 3.895 24 N -0.482 5.482 25 C 0.152 3.848 26 N -0.417 5.417 27 H 0.128 0.872 28 H 0.084 0.916 29 H 0.273 0.727 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.179 0.821 33 H 0.135 0.865 34 H 0.140 0.860 35 H 0.158 0.842 36 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.463 -8.545 16.113 19.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C -0.073 4.073 3 C 0.092 3.908 4 N -0.167 5.167 5 C -0.437 4.437 6 H 0.126 0.874 7 C -0.172 4.172 8 N -0.519 5.519 9 Si 0.753 3.247 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.194 1.194 13 C 0.251 3.749 14 O -0.434 6.434 15 C -0.114 4.114 16 C -0.025 4.025 17 C -0.379 4.379 18 S 0.319 5.681 19 C -0.166 4.166 20 C -0.073 4.073 21 C -0.087 4.087 22 C -0.193 4.193 23 C -0.052 4.052 24 N -0.190 5.190 25 C -0.009 4.009 26 N -0.129 5.129 27 H 0.146 0.854 28 H 0.102 0.898 29 H 0.083 0.917 30 H 0.121 0.879 31 H 0.114 0.886 32 H 0.197 0.803 33 H 0.153 0.847 34 H 0.158 0.842 35 H 0.176 0.824 36 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 5.632 -7.828 16.520 19.128 hybrid contribution -0.611 0.445 -1.197 1.416 sum 5.021 -7.383 15.323 17.734 Atomic orbital electron populations 1.80899 1.13617 1.10548 1.10318 1.29377 0.95418 0.91004 0.91500 1.18758 0.81533 0.89934 1.00550 1.43604 1.57242 1.11989 1.03907 1.19718 1.29771 0.96089 0.98099 0.87405 1.25249 0.95014 0.98703 0.98243 1.69851 1.19973 1.43894 1.18167 0.85907 0.79016 0.80328 0.79431 1.20126 1.21188 1.19366 1.19751 0.84040 0.88930 0.82154 1.90586 1.48882 1.42259 1.61642 1.20393 1.03224 0.99512 0.88273 1.19581 0.87283 0.98608 0.97031 1.26749 1.04945 1.12660 0.93589 1.84563 1.08329 1.65203 1.10033 1.25487 0.95482 1.04476 0.91205 1.18860 0.92271 1.03469 0.92695 1.21594 0.98954 0.95680 0.92479 1.22012 0.93627 1.02073 1.01584 1.22962 0.97939 0.94235 0.90096 1.67817 1.29162 1.13202 1.08810 1.23180 0.86079 0.90287 1.01330 1.66215 1.25344 1.12706 1.08613 0.85404 0.89844 0.91692 0.87917 0.88593 0.80321 0.84674 0.84219 0.82428 0.81029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.92 18.54 42.15 0.78 -10.13 16 2 C 0.25 5.23 12.95 -20.76 -0.27 4.96 16 3 C 0.22 4.20 4.91 -6.83 -0.03 4.17 16 4 N -0.45 -10.21 2.60 -117.93 -0.31 -10.52 16 5 C -0.31 -7.95 9.32 -14.93 -0.14 -8.09 16 6 H 0.11 2.96 7.39 -52.49 -0.39 2.58 16 7 C 0.03 0.77 4.87 -17.47 -0.09 0.68 16 8 N -0.88 -22.02 9.48 55.50 0.53 -21.49 16 9 Si 0.93 19.76 29.60 -169.99 -5.03 14.73 16 10 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 11 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 12 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 13 C 0.46 10.39 7.52 -10.98 -0.08 10.30 16 14 O -0.55 -14.54 15.07 5.55 0.08 -14.45 16 15 C -0.07 -1.20 4.78 -29.03 -0.14 -1.34 16 16 C 0.11 1.82 5.61 -84.40 -0.47 1.35 16 17 C -0.24 -3.41 11.02 29.15 0.32 -3.09 16 18 S 0.06 0.78 22.49 -107.50 -2.42 -1.64 16 19 C 0.11 1.65 7.36 -14.29 -0.11 1.55 16 20 C -0.07 -0.89 5.89 -104.83 -0.62 -1.51 16 21 C -0.06 -0.59 9.73 -38.89 -0.38 -0.97 16 22 C -0.17 -1.44 10.10 -39.50 -0.40 -1.84 16 23 C 0.11 1.02 11.17 -17.48 -0.20 0.82 16 24 N -0.48 -6.31 10.35 -12.91 -0.13 -6.44 16 25 C 0.15 2.14 10.85 -17.13 -0.19 1.95 16 26 N -0.42 -7.38 9.24 -7.55 -0.07 -7.45 16 27 H 0.13 2.53 6.46 -51.93 -0.34 2.19 16 28 H 0.08 1.18 6.68 -51.93 -0.35 0.83 16 29 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 30 H 0.10 1.43 7.42 -51.92 -0.39 1.05 16 31 H 0.10 1.49 7.38 -51.93 -0.38 1.11 16 32 H 0.18 2.08 8.06 -52.49 -0.42 1.66 16 33 H 0.14 1.09 7.42 -52.48 -0.39 0.70 16 34 H 0.14 0.69 8.06 -52.48 -0.42 0.27 16 35 H 0.16 1.01 8.06 -52.48 -0.42 0.58 16 36 H 0.17 2.59 7.83 -52.48 -0.41 2.18 16 LS Contribution 337.81 15.07 5.09 5.09 Total: -1.00 -33.16 337.81 -7.30 -40.46 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -3.04 Total: 2.91 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: -2.78 Total: 8.95 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: 0.80 Total: -56.04 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: 0.08 Total: -14.45 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.03 Total: 14.73 kcal Atomic # 16 Polarization: 0.78 SS G_CDS: -2.42 Total: -1.64 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.16 -7.30 -40.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355683002.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.891 kcal (2) G-P(sol) polarization free energy of solvation -33.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.88 seconds