Wall clock time and date at job start Tue Mar 31 2020 15:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46502 * 109.46783 * 216.46135 * 3 2 1 5 5 C 1.37097 * 119.99915 * 264.22846 * 4 3 2 6 6 H 1.07996 * 119.99735 * 197.72039 * 5 4 3 7 7 C 1.38946 * 120.00026 * 17.72654 * 5 4 3 8 8 N 1.31411 * 120.00179 * 21.39507 * 7 5 4 9 9 Si 1.86802 * 120.00181 * 201.39584 * 7 5 4 10 10 H 1.48501 * 109.47016 * 89.99714 * 9 7 5 11 11 H 1.48491 * 109.47447 * 209.99709 * 9 7 5 12 12 H 1.48499 * 109.46948 * 330.00388 * 9 7 5 13 13 C 1.34777 * 120.00165 * 84.23337 * 4 3 2 14 14 O 1.21291 * 120.00127 * 179.97438 * 13 4 3 15 15 C 1.50701 * 119.99915 * 359.97438 * 13 4 3 16 16 C 1.50702 * 109.47258 * 179.97438 * 15 13 4 17 17 C 1.33719 * 122.07536 * 125.00168 * 16 15 13 18 18 S 1.76248 * 108.21695 * 179.78249 * 17 16 15 19 19 C 1.76178 * 89.83936 * 0.30348 * 18 17 16 20 20 C 1.47869 * 125.47163 * 179.97438 * 19 18 17 21 21 C 1.39973 * 120.56114 * 359.69358 * 20 19 18 22 22 C 1.38358 * 118.29415 * 180.02562 * 21 20 19 23 23 C 1.38339 * 119.30731 * 0.02562 * 22 21 20 24 24 N 1.31912 * 121.07298 * 0.02562 * 23 22 21 25 25 C 1.31705 * 121.87464 * 359.65406 * 24 23 22 26 26 N 1.30224 * 109.05096 * 359.69273 * 19 18 17 27 27 H 1.09000 * 109.47673 * 96.46316 * 3 2 1 28 28 H 1.09005 * 109.47421 * 336.46046 * 3 2 1 29 29 H 0.96999 * 120.00271 * 180.02562 * 8 7 5 30 30 H 1.09011 * 109.46823 * 60.00469 * 15 13 4 31 31 H 1.09000 * 109.47546 * 300.00273 * 15 13 4 32 32 H 1.07999 * 125.88981 * 0.02562 * 17 16 15 33 33 H 1.08004 * 120.84980 * 0.02562 * 21 20 19 34 34 H 1.08010 * 120.34622 * 180.02562 * 22 21 20 35 35 H 1.08005 * 119.46279 * 179.97438 * 23 22 21 36 36 H 1.08003 * 119.71960 * 180.31654 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0957 1.1118 0.8209 5 6 3.4362 2.3017 0.2312 6 1 4.0522 3.0113 0.7636 7 6 2.9888 2.5947 -1.0512 8 7 1.9357 1.9766 -1.5369 9 14 3.8840 3.8673 -2.0848 10 1 4.9492 3.2013 -2.8768 11 1 2.9211 4.5245 -3.0045 12 1 4.4939 4.8877 -1.1948 13 6 3.2098 0.9641 2.1556 14 8 3.6141 1.8839 2.8352 15 6 2.8351 -0.3437 2.8038 16 6 3.0537 -0.2477 4.2918 17 6 2.0814 -0.5123 5.1709 18 16 2.7319 -0.2940 6.7943 19 6 4.2901 0.1532 6.1044 20 6 5.4963 0.5215 6.8763 21 6 5.4667 0.5433 8.2755 22 6 6.6221 0.8952 8.9505 23 6 7.7586 1.2119 8.2282 24 7 7.7569 1.1838 6.9093 25 6 6.6843 0.8492 6.2222 26 7 4.2105 0.1014 4.8056 27 1 2.9714 0.1165 -1.0211 28 1 2.9718 -0.9414 0.4104 29 1 1.6235 2.1809 -2.4323 30 1 3.4558 -1.1420 2.3966 31 1 1.7860 -0.5611 2.6036 32 1 1.0727 -0.8122 4.9280 33 1 4.5652 0.2918 8.8144 34 1 6.6365 0.9225 10.0302 35 1 8.6617 1.4874 8.7525 36 1 6.7233 0.8329 5.1430 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355683002.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:32 Heat of formation + Delta-G solvation = 71.997796 kcal Electronic energy + Delta-G solvation = -23928.732569 eV Core-core repulsion = 20311.973768 eV Total energy + Delta-G solvation = -3616.758801 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.39892 -40.87139 -39.88358 -37.51290 -36.13579 -34.52129 -33.78134 -33.09210 -31.67000 -29.49810 -28.91409 -26.71762 -26.13029 -24.63245 -23.28189 -21.37215 -20.25962 -19.74445 -18.89593 -18.22611 -17.95936 -17.87479 -17.09304 -16.89013 -16.57686 -16.02545 -15.64292 -15.44272 -15.25623 -14.78694 -14.68969 -14.56709 -14.25256 -14.08113 -14.05150 -13.82398 -13.49989 -13.20989 -13.08370 -12.91534 -12.79462 -12.45329 -12.30142 -12.12799 -12.04217 -11.31958 -11.09288 -10.85779 -10.61719 -10.40863 -10.33898 -10.18030 -9.88985 -9.24370 -8.39439 -5.94051 -0.82145 0.22030 0.27798 0.43294 0.62434 1.39680 1.47238 1.56669 1.79482 1.92239 2.08975 2.26938 2.37016 2.82769 2.88533 3.00770 3.20452 3.49549 3.61318 3.74316 3.86080 3.92436 4.05323 4.09767 4.20387 4.32988 4.45572 4.53008 4.60635 4.75432 4.80901 4.93436 4.98970 5.05213 5.21293 5.49737 5.66473 6.05630 6.43333 6.79078 6.95185 7.02041 7.15816 7.37975 7.97466 8.64342 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.015253 B = 0.003371 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.210437 B = 8303.371581 C = 9815.560562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C 0.258 3.742 3 C 0.220 3.780 4 N -0.458 5.458 5 C -0.337 4.337 6 H 0.076 0.924 7 C 0.007 3.993 8 N -0.892 5.892 9 Si 0.982 3.018 10 H -0.259 1.259 11 H -0.285 1.285 12 H -0.282 1.282 13 C 0.457 3.543 14 O -0.602 6.602 15 C -0.059 4.059 16 C 0.074 3.926 17 C -0.245 4.245 18 S 0.134 5.866 19 C 0.090 3.910 20 C -0.088 4.088 21 C -0.057 4.057 22 C -0.154 4.154 23 C 0.102 3.898 24 N -0.510 5.510 25 C 0.127 3.873 26 N -0.461 5.461 27 H 0.123 0.877 28 H 0.140 0.860 29 H 0.274 0.726 30 H 0.132 0.868 31 H 0.112 0.888 32 H 0.204 0.796 33 H 0.159 0.841 34 H 0.186 0.814 35 H 0.193 0.807 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.402 -9.779 18.321 21.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.187 5.187 2 C -0.059 4.059 3 C 0.094 3.906 4 N -0.179 5.179 5 C -0.465 4.465 6 H 0.094 0.906 7 C -0.195 4.195 8 N -0.531 5.531 9 Si 0.807 3.193 10 H -0.184 1.184 11 H -0.211 1.211 12 H -0.207 1.207 13 C 0.247 3.753 14 O -0.485 6.485 15 C -0.102 4.102 16 C -0.059 4.059 17 C -0.384 4.384 18 S 0.391 5.609 19 C -0.186 4.186 20 C -0.094 4.094 21 C -0.085 4.085 22 C -0.173 4.173 23 C -0.056 4.056 24 N -0.219 5.219 25 C -0.033 4.033 26 N -0.174 5.174 27 H 0.141 0.859 28 H 0.158 0.842 29 H 0.084 0.916 30 H 0.150 0.850 31 H 0.131 0.869 32 H 0.221 0.779 33 H 0.177 0.823 34 H 0.203 0.797 35 H 0.210 0.790 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.557 -9.099 18.714 21.538 hybrid contribution -0.548 0.867 -1.704 1.989 sum 5.009 -8.232 17.010 19.550 Atomic orbital electron populations 1.80900 1.14648 1.11682 1.11483 1.29763 0.95775 0.89955 0.90451 1.19087 0.80192 0.91029 1.00305 1.43763 1.57333 1.12143 1.04675 1.19531 1.30669 0.97344 0.98924 0.90619 1.25792 0.95197 1.00124 0.98349 1.69925 1.20260 1.44623 1.18264 0.85087 0.78250 0.78145 0.77779 1.18376 1.21084 1.20709 1.20716 0.82374 0.90430 0.81820 1.90550 1.50671 1.44546 1.62775 1.20329 1.04494 0.96777 0.88585 1.19662 0.88095 1.00829 0.97266 1.27141 1.05482 1.11222 0.94578 1.84158 1.05511 1.63418 1.07829 1.25873 0.97371 1.04215 0.91101 1.18977 0.91444 1.04834 0.94160 1.21929 1.00648 0.94920 0.90998 1.22496 0.91991 0.99170 1.03642 1.23650 0.99939 0.92994 0.88979 1.67763 1.29075 1.14183 1.10872 1.22825 0.87415 0.92549 1.00478 1.66185 1.26524 1.14335 1.10386 0.85908 0.84223 0.91610 0.84977 0.86949 0.77937 0.82331 0.79664 0.78993 0.83994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -23.03 18.54 20.01 0.37 -22.66 16 2 C 0.26 10.78 12.95 89.44 1.16 11.94 16 3 C 0.22 8.20 4.91 84.57 0.42 8.62 16 4 N -0.46 -21.29 2.60 -645.41 -1.68 -22.97 16 5 C -0.34 -17.88 9.32 84.04 0.78 -17.10 16 6 H 0.08 4.43 7.39 -2.91 -0.02 4.41 16 7 C 0.01 0.37 4.87 84.93 0.41 0.78 16 8 N -0.89 -44.58 9.48 21.66 0.21 -44.37 16 9 Si 0.98 41.02 29.60 68.60 2.03 43.05 16 10 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 11 H -0.29 -11.81 7.11 99.48 0.71 -11.10 16 12 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 13 C 0.46 20.95 7.52 87.66 0.66 21.61 16 14 O -0.60 -33.26 15.07 -3.06 -0.05 -33.31 16 15 C -0.06 -1.97 4.78 29.10 0.14 -1.83 16 16 C 0.07 2.50 5.61 41.61 0.23 2.74 16 17 C -0.25 -6.59 11.02 66.79 0.74 -5.85 16 18 S 0.13 3.07 22.49 -56.49 -1.27 1.80 16 19 C 0.09 2.73 7.36 87.48 0.64 3.37 16 20 C -0.09 -2.35 5.89 -20.00 -0.12 -2.47 16 21 C -0.06 -1.02 9.73 22.72 0.22 -0.80 16 22 C -0.15 -2.01 10.10 22.32 0.23 -1.79 16 23 C 0.10 1.75 11.17 84.70 0.95 2.69 16 24 N -0.51 -13.55 10.35 -194.77 -2.02 -15.57 16 25 C 0.13 3.82 10.85 85.02 0.92 4.74 16 26 N -0.46 -16.88 9.24 -177.80 -1.64 -18.52 16 27 H 0.12 4.76 6.46 -2.39 -0.02 4.74 16 28 H 0.14 3.57 6.68 -2.38 -0.02 3.56 16 29 H 0.27 13.23 8.31 -92.71 -0.77 12.46 16 30 H 0.13 3.47 7.42 -2.38 -0.02 3.45 16 31 H 0.11 3.31 7.38 -2.39 -0.02 3.29 16 32 H 0.20 4.21 8.06 -2.91 -0.02 4.18 16 33 H 0.16 1.98 7.42 -2.91 -0.02 1.96 16 34 H 0.19 0.75 8.06 -2.91 -0.02 0.73 16 35 H 0.19 1.80 8.06 -2.91 -0.02 1.77 16 36 H 0.14 4.91 7.83 -2.91 -0.02 4.89 16 Total: -1.00 -76.98 337.81 4.48 -72.50 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 1.15 Total: 13.40 kcal Atomic # 6 Polarization: 19.28 SS G_CDS: 7.38 Total: 26.66 kcal Atomic # 7 Polarization: -119.34 SS G_CDS: -4.76 Total: -124.10 kcal Atomic # 8 Polarization: -33.26 SS G_CDS: -0.05 Total: -33.31 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Atomic # 16 Polarization: 3.07 SS G_CDS: -1.27 Total: 1.80 kcal Total: -76.98 4.48 -72.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355683002.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.493 kcal (2) G-P(sol) polarization free energy of solvation -76.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds