Wall clock time and date at job start Tue Mar 31 2020 15:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99994 * 2 1 4 4 H 1.48493 * 109.47488 * 270.00295 * 3 2 1 5 5 H 1.48499 * 109.46811 * 30.00919 * 3 2 1 6 6 H 1.48502 * 109.46876 * 150.00386 * 3 2 1 7 7 C 1.38727 * 119.99997 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00009 * 359.97438 * 7 2 1 9 9 S 1.76199 * 120.00236 * 179.97438 * 7 2 1 10 10 C 1.76199 * 100.00148 * 185.11594 * 9 7 2 11 11 C 1.39223 * 120.01888 * 265.52583 * 10 9 7 12 12 C 1.38134 * 120.20170 * 179.97438 * 11 10 9 13 13 C 1.38085 * 120.24272 * 359.74653 * 12 11 10 14 14 C 1.39641 * 120.03489 * 0.51227 * 13 12 11 15 15 C 1.47833 * 120.09851 * 179.76546 * 14 13 12 16 16 N 1.32119 * 126.67488 * 0.02562 * 15 14 13 17 17 C 1.34208 * 105.54683 * 180.12108 * 16 15 14 18 18 C 1.50700 * 126.18719 * 179.90511 * 17 16 15 19 19 N 1.46501 * 109.47053 * 269.71521 * 18 17 16 20 20 C 1.34949 * 126.03493 * 125.00266 * 19 18 17 21 21 C 1.35310 * 107.74524 * 179.73404 * 20 19 18 22 22 C 1.39873 * 107.92093 * 0.02562 * 21 20 19 23 23 N 1.30836 * 108.20250 * 359.97438 * 22 21 20 24 24 N 1.30043 * 107.61904 * 359.64422 * 17 16 15 25 25 O 1.21279 * 110.48786 * 0.22756 * 24 17 16 26 26 C 1.38827 * 120.02008 * 85.51144 * 10 9 7 27 27 H 0.97006 * 120.00361 * 359.97438 * 1 2 3 28 28 H 1.08004 * 119.90099 * 0.02562 * 11 10 9 29 29 H 1.08001 * 119.87641 * 180.02562 * 12 11 10 30 30 H 1.07998 * 119.98112 * 180.25570 * 13 12 11 31 31 H 1.09004 * 109.46696 * 149.71931 * 18 17 16 32 32 H 1.09004 * 109.46828 * 29.71680 * 18 17 16 33 33 H 1.07999 * 126.12825 * 359.75268 * 20 19 18 34 34 H 1.08006 * 126.04108 * 179.97438 * 21 20 19 35 35 H 1.08001 * 125.89823 * 179.97438 * 22 21 20 36 36 H 1.08005 * 120.12359 * 359.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0098 -1.2014 -0.0005 8 1 1.4698 -2.1367 -0.0005 9 16 3.7718 -1.2015 -0.0012 10 6 4.0777 -2.9298 -0.1565 11 6 4.2917 -3.7041 0.9806 12 6 4.5313 -5.0594 0.8633 13 6 4.5550 -5.6563 -0.3816 14 6 4.3471 -4.8882 -1.5291 15 6 4.3774 -5.5249 -2.8630 16 7 4.5881 -6.8031 -3.1227 17 6 4.5276 -6.9134 -4.4589 18 6 4.7060 -8.1797 -5.2561 19 7 6.1202 -8.3440 -5.6017 20 6 6.8832 -9.4237 -5.3316 21 6 8.1231 -9.1847 -5.8179 22 6 8.1178 -7.9151 -6.4048 23 7 6.9176 -7.4103 -6.2760 24 7 4.2816 -5.7308 -4.9407 25 8 4.1912 -4.9179 -4.0452 26 6 4.1052 -3.5202 -1.4126 27 1 -0.4851 0.8401 0.0004 28 1 4.2694 -3.2439 1.9574 29 1 4.6962 -5.6552 1.7489 30 1 4.7387 -6.7171 -0.4681 31 1 4.1134 -8.1208 -6.1690 32 1 4.3756 -9.0322 -4.6627 33 1 6.5618 -10.3185 -4.8193 34 1 8.9678 -9.8553 -5.7619 35 1 8.9591 -7.4344 -6.8820 36 1 3.9389 -2.9221 -2.2964 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356017603.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:29 Heat of formation + Delta-G solvation = 180.448353 kcal Electronic energy + Delta-G solvation = -23271.707076 eV Core-core repulsion = 19659.651044 eV Total energy + Delta-G solvation = -3612.056032 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -45.61586 -41.38166 -38.85993 -36.37578 -34.16898 -32.67969 -32.56528 -30.83634 -30.46415 -30.10695 -27.77022 -25.74940 -24.66355 -23.62140 -22.27940 -21.75357 -21.36157 -20.73159 -18.50493 -18.28150 -17.63575 -17.28190 -16.64656 -15.98101 -15.55664 -15.09570 -14.91944 -14.77459 -14.32439 -14.21503 -13.60621 -13.55186 -13.18251 -13.06524 -12.92544 -12.89845 -12.50708 -12.02246 -11.88771 -11.44363 -11.35620 -11.16850 -11.10671 -10.93478 -10.83001 -10.43967 -9.97234 -9.79505 -9.28736 -9.14912 -8.94647 -8.64711 -8.24422 -7.22401 -6.39190 -4.16042 0.47953 1.35051 1.43580 1.61483 2.07349 2.54958 2.59865 2.63524 2.79014 3.21993 3.22969 3.33774 3.42654 3.75016 3.83290 4.20095 4.23733 4.50500 4.70048 4.75191 4.81274 4.91760 4.99335 5.04145 5.15914 5.25017 5.32514 5.45801 5.56252 5.59901 5.71214 5.72952 5.82034 6.04119 6.33724 6.36902 6.48012 6.62390 6.66575 6.92411 7.40750 7.84716 8.00121 8.37945 9.04443 10.70041 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.021260 B = 0.002544 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.726068 B =11001.925326 C =11422.855858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.239 1.239 7 C -0.512 4.512 8 H 0.092 0.908 9 S -0.107 6.107 10 C -0.082 4.082 11 C -0.044 4.044 12 C -0.136 4.136 13 C -0.058 4.058 14 C -0.056 4.056 15 C 0.251 3.749 16 N -0.478 5.478 17 C 0.146 3.854 18 C 0.236 3.764 19 N -0.375 5.375 20 C 0.061 3.939 21 C -0.273 4.273 22 C 0.046 3.954 23 N -0.286 5.286 24 N -0.356 5.356 25 O 0.094 5.906 26 C -0.034 4.034 27 H 0.273 0.727 28 H 0.137 0.863 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.113 0.887 32 H 0.129 0.871 33 H 0.177 0.823 34 H 0.149 0.851 35 H 0.184 0.816 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.710 -18.611 -6.290 23.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.163 1.163 7 C -0.659 4.659 8 H 0.110 0.890 9 S 0.127 5.873 10 C -0.192 4.192 11 C -0.066 4.066 12 C -0.155 4.155 13 C -0.078 4.078 14 C -0.060 4.060 15 C 0.035 3.965 16 N -0.211 5.211 17 C -0.128 4.128 18 C 0.112 3.888 19 N -0.159 5.159 20 C -0.084 4.084 21 C -0.302 4.302 22 C -0.141 4.141 23 N -0.107 5.107 24 N -0.060 5.060 25 O 0.031 5.969 26 C -0.056 4.056 27 H 0.083 0.917 28 H 0.155 0.845 29 H 0.150 0.850 30 H 0.151 0.849 31 H 0.131 0.869 32 H 0.147 0.853 33 H 0.194 0.806 34 H 0.167 0.833 35 H 0.201 0.799 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 12.321 -16.866 -7.227 22.102 hybrid contribution -0.241 -0.879 0.112 0.919 sum 12.080 -17.745 -7.115 22.615 Atomic orbital electron populations 1.69919 1.05876 1.27908 1.47304 1.24739 0.94507 0.98868 0.93216 0.86748 0.81605 0.83510 0.79999 1.18994 1.19742 1.16291 1.22240 0.86650 0.97750 1.59264 0.88980 1.83157 1.11301 0.97256 1.95615 1.22131 1.02075 1.01311 0.93698 1.21994 0.92614 0.93019 0.98960 1.21097 1.02442 0.95077 0.96928 1.21128 0.96164 0.99691 0.90806 1.17261 1.10213 0.93531 0.85042 1.26422 0.93991 0.86227 0.89839 1.72038 1.21652 1.15298 1.12150 1.25390 1.03173 0.95688 0.88562 1.19653 0.78416 0.92115 0.98580 1.48556 1.09303 1.13127 1.44885 1.22618 0.91917 0.93030 1.00877 1.21542 0.98142 0.99658 1.10871 1.23991 0.95624 0.94792 0.99726 1.77534 1.03326 1.13999 1.15794 1.74654 1.18576 1.00581 1.12208 1.85457 1.64126 1.34763 1.12543 1.21917 0.92957 0.92019 0.98733 0.91726 0.84485 0.84987 0.84916 0.86876 0.85331 0.80621 0.83299 0.79928 0.84168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.53 13.97 55.49 0.77 -24.76 16 2 C 0.10 2.67 5.50 -17.46 -0.10 2.58 16 3 Si 0.86 20.33 27.74 -169.99 -4.71 15.61 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.24 -5.47 6.74 56.52 0.38 -5.09 16 7 C -0.51 -14.04 10.00 30.91 0.31 -13.73 16 8 H 0.09 2.74 8.02 -52.49 -0.42 2.32 16 9 S -0.11 -2.45 19.38 -107.50 -2.08 -4.53 16 10 C -0.08 -1.57 5.45 -39.00 -0.21 -1.78 16 11 C -0.04 -0.72 9.79 -39.25 -0.38 -1.10 16 12 C -0.14 -1.80 10.02 -39.68 -0.40 -2.20 16 13 C -0.06 -0.80 9.70 -39.11 -0.38 -1.18 16 14 C -0.06 -0.89 5.87 -105.01 -0.62 -1.50 16 15 C 0.25 3.97 8.01 -13.85 -0.11 3.86 16 16 N -0.48 -7.05 11.25 -10.16 -0.11 -7.17 16 17 C 0.15 2.02 7.64 -156.55 -1.20 0.83 16 18 C 0.24 2.27 7.13 -5.19 -0.04 2.23 16 19 N -0.37 -4.13 3.67 -62.54 -0.23 -4.36 16 20 C 0.06 0.51 11.45 -17.22 -0.20 0.31 16 21 C -0.27 -2.35 10.80 -40.01 -0.43 -2.78 16 22 C 0.05 0.48 12.03 -17.36 -0.21 0.27 16 23 N -0.29 -3.82 12.41 30.63 0.38 -3.44 16 24 N -0.36 -5.71 12.15 31.19 0.38 -5.33 16 25 O 0.09 1.57 11.13 16.68 0.19 1.75 16 26 C -0.03 -0.60 9.48 -38.92 -0.37 -0.97 16 27 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.14 2.06 8.06 -52.48 -0.42 1.64 16 29 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 30 H 0.13 1.58 7.87 -52.49 -0.41 1.17 16 31 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.13 0.78 8.07 -51.93 -0.42 0.36 16 33 H 0.18 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.15 0.90 8.06 -52.48 -0.42 0.47 16 35 H 0.18 1.36 8.06 -52.49 -0.42 0.93 16 36 H 0.14 2.51 7.95 -52.48 -0.42 2.09 16 LS Contribution 344.17 15.07 5.19 5.19 Total: -1.00 -33.30 344.17 -7.93 -41.23 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -3.36 Total: 0.97 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: -4.33 Total: -15.16 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: 1.19 Total: -45.05 kcal Atomic # 8 Polarization: 1.57 SS G_CDS: 0.19 Total: 1.75 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.71 Total: 15.61 kcal Atomic # 16 Polarization: -2.45 SS G_CDS: -2.08 Total: -4.53 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.30 -7.93 -41.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356017603.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 221.677 kcal (2) G-P(sol) polarization free energy of solvation -33.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 188.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 180.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds