Wall clock time and date at job start Tue Mar 31 2020 15:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99994 * 2 1 4 4 H 1.48493 * 109.47488 * 270.00295 * 3 2 1 5 5 H 1.48499 * 109.46811 * 30.00919 * 3 2 1 6 6 H 1.48502 * 109.46876 * 150.00386 * 3 2 1 7 7 C 1.38727 * 119.99997 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00009 * 359.97438 * 7 2 1 9 9 S 1.76199 * 120.00236 * 179.97438 * 7 2 1 10 10 C 1.76199 * 100.00148 * 185.11594 * 9 7 2 11 11 C 1.39223 * 120.01888 * 265.52583 * 10 9 7 12 12 C 1.38134 * 120.20170 * 179.97438 * 11 10 9 13 13 C 1.38085 * 120.24272 * 359.74653 * 12 11 10 14 14 C 1.39641 * 120.03489 * 0.51227 * 13 12 11 15 15 C 1.47833 * 120.09851 * 179.76546 * 14 13 12 16 16 N 1.32119 * 126.67488 * 0.02562 * 15 14 13 17 17 C 1.34208 * 105.54683 * 180.12108 * 16 15 14 18 18 C 1.50700 * 126.18719 * 179.90511 * 17 16 15 19 19 N 1.46501 * 109.47053 * 269.71521 * 18 17 16 20 20 C 1.34949 * 126.03493 * 125.00266 * 19 18 17 21 21 C 1.35310 * 107.74524 * 179.73404 * 20 19 18 22 22 C 1.39873 * 107.92093 * 0.02562 * 21 20 19 23 23 N 1.30836 * 108.20250 * 359.97438 * 22 21 20 24 24 N 1.30043 * 107.61904 * 359.64422 * 17 16 15 25 25 O 1.21279 * 110.48786 * 0.22756 * 24 17 16 26 26 C 1.38827 * 120.02008 * 85.51144 * 10 9 7 27 27 H 0.97006 * 120.00361 * 359.97438 * 1 2 3 28 28 H 1.08004 * 119.90099 * 0.02562 * 11 10 9 29 29 H 1.08001 * 119.87641 * 180.02562 * 12 11 10 30 30 H 1.07998 * 119.98112 * 180.25570 * 13 12 11 31 31 H 1.09004 * 109.46696 * 149.71931 * 18 17 16 32 32 H 1.09004 * 109.46828 * 29.71680 * 18 17 16 33 33 H 1.07999 * 126.12825 * 359.75268 * 20 19 18 34 34 H 1.08006 * 126.04108 * 179.97438 * 21 20 19 35 35 H 1.08001 * 125.89823 * 179.97438 * 22 21 20 36 36 H 1.08005 * 120.12359 * 359.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0098 -1.2014 -0.0005 8 1 1.4698 -2.1367 -0.0005 9 16 3.7718 -1.2015 -0.0012 10 6 4.0777 -2.9298 -0.1565 11 6 4.2917 -3.7041 0.9806 12 6 4.5313 -5.0594 0.8633 13 6 4.5550 -5.6563 -0.3816 14 6 4.3471 -4.8882 -1.5291 15 6 4.3774 -5.5249 -2.8630 16 7 4.5881 -6.8031 -3.1227 17 6 4.5276 -6.9134 -4.4589 18 6 4.7060 -8.1797 -5.2561 19 7 6.1202 -8.3440 -5.6017 20 6 6.8832 -9.4237 -5.3316 21 6 8.1231 -9.1847 -5.8179 22 6 8.1178 -7.9151 -6.4048 23 7 6.9176 -7.4103 -6.2760 24 7 4.2816 -5.7308 -4.9407 25 8 4.1912 -4.9179 -4.0452 26 6 4.1052 -3.5202 -1.4126 27 1 -0.4851 0.8401 0.0004 28 1 4.2694 -3.2439 1.9574 29 1 4.6962 -5.6552 1.7489 30 1 4.7387 -6.7171 -0.4681 31 1 4.1134 -8.1208 -6.1690 32 1 4.3756 -9.0322 -4.6627 33 1 6.5618 -10.3185 -4.8193 34 1 8.9678 -9.8553 -5.7619 35 1 8.9591 -7.4344 -6.8820 36 1 3.9389 -2.9221 -2.2964 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356017603.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:28 Heat of formation + Delta-G solvation = 158.521819 kcal Electronic energy + Delta-G solvation = -23272.657882 eV Core-core repulsion = 19659.651044 eV Total energy + Delta-G solvation = -3613.006838 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.073 amu Computer time = 2.67 seconds Orbital eigenvalues (eV) -46.78283 -42.07886 -40.12402 -37.45509 -35.18752 -34.70135 -33.66940 -32.10256 -31.50118 -30.98676 -28.58452 -27.90293 -25.86521 -24.75167 -23.55513 -22.78207 -22.02726 -21.63244 -20.09905 -19.41990 -19.12468 -18.12393 -17.92153 -17.13676 -17.03651 -16.62563 -16.17024 -15.67714 -15.57479 -14.97151 -14.91969 -14.74740 -14.35001 -14.34043 -13.98637 -13.73737 -13.61895 -13.35881 -13.31117 -13.06494 -12.96796 -12.67871 -12.37520 -12.29315 -11.87982 -11.74198 -11.61525 -11.20649 -10.94932 -10.56100 -9.93201 -9.73215 -9.62170 -9.14051 -8.52282 -6.26679 -0.75682 0.10155 0.32290 0.86803 0.99280 1.07093 1.33110 1.44963 1.45956 1.66944 1.71929 1.92669 2.22225 2.23511 2.47107 2.74251 2.86316 2.90748 3.42323 3.79774 3.84257 3.97258 3.99251 4.06387 4.17140 4.23307 4.31291 4.41339 4.55073 4.60610 4.66277 4.81130 4.85684 5.11668 5.14116 5.26772 5.36724 5.65242 5.70480 5.72061 6.03203 6.13169 6.69131 6.82761 6.90536 8.60949 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.021260 B = 0.002544 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.726068 B =11001.925326 C =11422.855858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.042 3.958 3 Si 0.919 3.081 4 H -0.262 1.262 5 H -0.261 1.261 6 H -0.225 1.225 7 C -0.523 4.523 8 H 0.050 0.950 9 S -0.106 6.106 10 C -0.113 4.113 11 C -0.048 4.048 12 C -0.116 4.116 13 C -0.042 4.042 14 C -0.059 4.059 15 C 0.243 3.757 16 N -0.472 5.472 17 C 0.157 3.843 18 C 0.231 3.769 19 N -0.386 5.386 20 C 0.067 3.933 21 C -0.281 4.281 22 C 0.037 3.963 23 N -0.347 5.347 24 N -0.382 5.382 25 O 0.069 5.931 26 C -0.048 4.048 27 H 0.277 0.723 28 H 0.147 0.853 29 H 0.180 0.820 30 H 0.162 0.838 31 H 0.123 0.877 32 H 0.170 0.830 33 H 0.218 0.782 34 H 0.174 0.826 35 H 0.200 0.800 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.733 -21.398 -5.341 26.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.164 4.164 3 Si 0.740 3.260 4 H -0.187 1.187 5 H -0.186 1.186 6 H -0.148 1.148 7 C -0.670 4.670 8 H 0.068 0.932 9 S 0.128 5.872 10 C -0.224 4.224 11 C -0.070 4.070 12 C -0.135 4.135 13 C -0.062 4.062 14 C -0.063 4.063 15 C 0.026 3.974 16 N -0.206 5.206 17 C -0.118 4.118 18 C 0.108 3.892 19 N -0.170 5.170 20 C -0.077 4.077 21 C -0.310 4.310 22 C -0.149 4.149 23 N -0.169 5.169 24 N -0.091 5.091 25 O 0.011 5.989 26 C -0.071 4.071 27 H 0.087 0.913 28 H 0.165 0.835 29 H 0.197 0.803 30 H 0.180 0.820 31 H 0.141 0.859 32 H 0.188 0.812 33 H 0.235 0.765 34 H 0.192 0.808 35 H 0.217 0.783 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 14.359 -19.642 -6.264 25.124 hybrid contribution -0.803 -0.308 -0.221 0.888 sum 13.556 -19.949 -6.485 24.976 Atomic orbital electron populations 1.70029 1.07664 1.29148 1.48872 1.25691 0.95350 1.02553 0.92757 0.85812 0.80908 0.78999 0.80322 1.18672 1.18556 1.14823 1.22393 0.89862 0.96228 1.58528 0.93168 1.82735 1.07008 1.01667 1.95819 1.22018 1.05540 0.99330 0.95472 1.22181 0.92215 0.94320 0.98250 1.21534 0.99778 0.93817 0.98371 1.21537 0.93772 1.00810 0.90044 1.17333 1.10223 0.92745 0.86047 1.26536 0.94322 0.86792 0.89725 1.72042 1.21467 1.14405 1.12648 1.26206 1.00679 0.96395 0.88505 1.20113 0.78484 0.91427 0.99168 1.48649 1.09632 1.13587 1.45182 1.23359 0.91403 0.93266 0.99702 1.21937 0.99287 0.99256 1.10514 1.24474 0.95388 0.95736 0.99313 1.77475 1.04882 1.16255 1.18251 1.74663 1.20351 1.01559 1.12498 1.85438 1.64912 1.35532 1.12980 1.21751 0.94196 0.93228 0.97888 0.91330 0.83487 0.80282 0.82041 0.85871 0.81218 0.76542 0.80820 0.78329 0.85716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.66 13.97 21.63 0.30 -55.36 16 2 C 0.04 2.39 5.50 84.84 0.47 2.85 16 3 Si 0.92 42.53 27.74 68.60 1.90 44.43 16 4 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 5 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 6 H -0.22 -9.82 6.74 99.48 0.67 -9.15 16 7 C -0.52 -29.90 10.00 67.94 0.68 -29.22 16 8 H 0.05 3.18 8.02 -2.91 -0.02 3.15 16 9 S -0.11 -4.95 19.38 -56.49 -1.09 -6.05 16 10 C -0.11 -4.38 5.45 22.65 0.12 -4.25 16 11 C -0.05 -1.49 9.79 22.48 0.22 -1.27 16 12 C -0.12 -2.65 10.02 22.21 0.22 -2.42 16 13 C -0.04 -1.03 9.70 22.57 0.22 -0.81 16 14 C -0.06 -1.83 5.87 -20.12 -0.12 -1.95 16 15 C 0.24 7.61 8.01 87.31 0.70 8.31 16 16 N -0.47 -13.12 11.25 -302.74 -3.41 -16.53 16 17 C 0.16 4.17 7.64 138.52 1.06 5.23 16 18 C 0.23 3.91 7.13 85.63 0.61 4.52 16 19 N -0.39 -7.71 3.67 -351.79 -1.29 -9.00 16 20 C 0.07 0.90 11.45 83.54 0.96 1.86 16 21 C -0.28 -4.10 10.80 21.99 0.24 -3.86 16 22 C 0.04 0.73 12.03 85.24 1.03 1.76 16 23 N -0.35 -9.10 12.41 -57.02 -0.71 -9.81 16 24 N -0.38 -12.45 12.15 -58.64 -0.71 -13.16 16 25 O 0.07 2.39 11.13 69.74 0.78 3.16 16 26 C -0.05 -1.76 9.48 22.69 0.22 -1.55 16 27 H 0.28 15.47 8.31 -92.70 -0.77 14.70 16 28 H 0.15 4.17 8.06 -2.91 -0.02 4.15 16 29 H 0.18 2.50 8.06 -2.91 -0.02 2.47 16 30 H 0.16 3.09 7.87 -2.91 -0.02 3.07 16 31 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.17 1.35 8.07 -2.38 -0.02 1.34 16 33 H 0.22 0.85 8.06 -2.91 -0.02 0.83 16 34 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 35 H 0.20 2.82 8.06 -2.91 -0.02 2.79 16 36 H 0.12 4.83 7.95 -2.91 -0.02 4.80 16 Total: -1.00 -77.14 344.17 3.47 -73.67 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: 1.09 Total: 9.44 kcal Atomic # 6 Polarization: -27.42 SS G_CDS: 6.62 Total: -20.81 kcal Atomic # 7 Polarization: -98.04 SS G_CDS: -5.81 Total: -103.85 kcal Atomic # 8 Polarization: 2.39 SS G_CDS: 0.78 Total: 3.16 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 1.90 Total: 44.43 kcal Atomic # 16 Polarization: -4.95 SS G_CDS: -1.09 Total: -6.05 kcal Total: -77.14 3.47 -73.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356017603.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 232.189 kcal (2) G-P(sol) polarization free energy of solvation -77.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.67 seconds