Wall clock time and date at job start Tue Mar 31 2020 15:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99823 * 2 1 4 4 H 1.48500 * 109.46973 * 269.99545 * 3 2 1 5 5 H 1.48504 * 109.47027 * 29.99723 * 3 2 1 6 6 H 1.48497 * 109.46950 * 149.99762 * 3 2 1 7 7 C 1.37879 * 120.00216 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99756 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99926 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.47210 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47298 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.46851 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99614 * 179.97438 * 12 11 10 14 14 O 1.21588 * 120.00178 * 0.02562 * 13 12 11 15 15 N 1.34784 * 119.99964 * 180.02562 * 13 12 11 16 16 C 1.46493 * 119.99864 * 179.73002 * 15 13 12 17 17 H 1.09001 * 110.29424 * 34.29589 * 16 15 13 18 18 C 1.54143 * 110.32713 * 156.43010 * 16 15 13 19 19 C 1.54220 * 101.72256 * 92.31505 * 18 16 15 20 20 C 1.52127 * 104.83863 * 26.48462 * 19 18 16 21 21 S 1.76527 * 139.37378 * 162.56891 * 20 19 18 22 22 C 1.75574 * 91.09634 * 180.02562 * 21 20 19 23 23 Cl 1.73600 * 125.18261 * 179.97438 * 22 21 20 24 24 C 1.32747 * 109.63925 * 359.97438 * 22 21 20 25 25 C 1.34041 * 110.71360 * 342.59402 * 20 19 18 26 26 H 0.96996 * 120.00505 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47545 * 60.00592 * 9 7 2 28 28 H 1.08994 * 109.47229 * 300.00383 * 9 7 2 29 29 H 1.09001 * 109.46675 * 59.99702 * 10 9 7 30 30 H 1.09006 * 109.46802 * 300.00334 * 10 9 7 31 31 H 1.09000 * 109.46986 * 59.99805 * 11 10 9 32 32 H 1.09002 * 109.46857 * 299.99671 * 11 10 9 33 33 H 0.96996 * 120.00499 * 0.02562 * 12 11 10 34 34 H 0.97000 * 119.99339 * 0.02562 * 15 13 12 35 35 H 1.08999 * 110.97972 * 210.42548 * 18 16 15 36 36 H 1.09005 * 110.97267 * 334.17359 * 18 16 15 37 37 H 1.08994 * 110.36698 * 145.32359 * 19 18 16 38 38 H 1.09002 * 110.36566 * 267.64361 * 19 18 16 39 39 H 1.07997 * 122.19919 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0010 11 6 5.5517 -2.6364 0.0022 12 7 6.0400 -4.0176 0.0027 13 6 7.3650 -4.2638 0.0033 14 8 8.1551 -3.3396 0.0039 15 7 7.8144 -5.5346 0.0032 16 6 9.2547 -5.8021 -0.0021 17 1 9.7829 -5.0400 0.5708 18 6 9.5414 -7.2017 0.5766 19 6 9.5438 -8.0726 -0.6961 20 6 9.9386 -7.1231 -1.8172 21 16 10.5444 -7.1848 -3.4741 22 6 10.5542 -5.4317 -3.5716 23 17 11.0472 -4.5097 -4.9574 24 6 10.1272 -4.9187 -2.4241 25 6 9.7807 -5.8478 -1.4360 26 1 -0.4851 0.8400 -0.0004 27 1 3.8746 -0.6800 0.8912 28 1 3.8752 -0.6803 -0.8887 29 1 3.6586 -3.1501 -0.8892 30 1 3.6579 -3.1505 0.8908 31 1 5.9142 -2.1229 0.8927 32 1 5.9156 -2.1223 -0.8873 33 1 5.4097 -4.7549 0.0019 34 1 7.1840 -6.2718 0.0024 35 1 10.5132 -7.2286 1.0696 36 1 8.7506 -7.5108 1.2602 37 1 10.2745 -8.8761 -0.6046 38 1 8.5498 -8.4816 -0.8778 39 1 10.0528 -3.8536 -2.2622 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357752390.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:31 Heat of formation + Delta-G solvation = -6.509882 kcal Electronic energy + Delta-G solvation = -22259.262412 eV Core-core repulsion = 18740.206757 eV Total energy + Delta-G solvation = -3519.055656 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.63707 -39.11994 -37.21730 -35.64372 -35.07267 -33.49328 -33.03474 -31.32213 -28.26250 -27.86792 -26.61468 -23.16537 -22.79415 -21.57977 -20.96788 -20.32907 -19.10099 -18.32118 -17.81587 -16.79156 -16.45540 -15.70221 -15.37437 -15.19980 -14.70705 -14.37131 -14.25494 -13.94397 -13.84708 -13.72630 -13.41230 -12.69115 -12.58887 -12.20337 -12.08625 -12.00855 -11.90633 -11.66010 -11.56324 -11.30351 -11.06220 -10.99797 -10.88345 -10.30039 -10.00824 -9.82776 -9.68396 -9.36189 -9.22455 -8.86270 -8.75738 -8.68538 -8.55089 -6.06063 -4.04739 0.48032 0.68346 1.46099 1.87172 2.10481 2.87621 3.27787 3.32103 3.39560 3.44121 3.97242 4.10901 4.30624 4.45001 4.55508 4.68189 4.94020 5.06259 5.26438 5.28204 5.36281 5.41624 5.51307 5.56425 5.59156 5.69718 5.81550 6.03283 6.04100 6.34409 6.38048 6.47315 6.68617 6.82378 6.96757 7.24008 7.37326 7.76158 8.06774 8.50396 8.67314 8.97733 9.56310 11.07189 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.015679 B = 0.002365 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.421559 B =11838.348766 C =12944.976099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.133 3.867 12 N -0.741 5.741 13 C 0.702 3.298 14 O -0.590 6.590 15 N -0.740 5.740 16 C 0.225 3.775 17 H 0.101 0.899 18 C -0.123 4.123 19 C -0.045 4.045 20 C -0.193 4.193 21 S 0.166 5.834 22 C -0.156 4.156 23 Cl -0.012 7.012 24 C -0.081 4.081 25 C -0.124 4.124 26 H 0.263 0.737 27 H 0.019 0.981 28 H 0.014 0.986 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.395 0.605 34 H 0.396 0.604 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.346 -20.403 -3.233 31.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C 0.010 3.990 12 N -0.395 5.395 13 C 0.402 3.598 14 O -0.468 6.468 15 N -0.395 5.395 16 C 0.117 3.883 17 H 0.119 0.881 18 C -0.162 4.162 19 C -0.084 4.084 20 C -0.311 4.311 21 S 0.430 5.570 22 C -0.299 4.299 23 Cl 0.017 6.983 24 C -0.112 4.112 25 C -0.138 4.138 26 H 0.073 0.927 27 H 0.037 0.963 28 H 0.033 0.967 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.228 0.772 34 H 0.229 0.771 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 25.349 -20.439 -4.405 32.860 hybrid contribution -0.639 1.585 0.502 1.782 sum 24.710 -18.854 -3.903 31.325 Atomic orbital electron populations 1.69910 1.06324 1.26963 1.51057 1.25029 0.94745 0.99246 0.94463 0.86778 0.80425 0.83507 0.78611 1.20243 1.21384 1.18843 1.21097 0.89325 0.94489 1.51055 0.91031 1.19499 0.97226 0.91474 0.96685 1.21705 0.90709 1.00996 1.01661 1.21512 0.95671 0.80025 1.01806 1.45332 1.04762 1.10106 1.79280 1.16011 0.83043 0.83046 0.77702 1.90912 1.55028 1.43079 1.57757 1.45148 1.06880 1.06550 1.80935 1.20040 0.80510 0.97919 0.89823 0.88089 1.22602 1.04010 0.92835 0.96748 1.20894 1.02118 0.96145 0.89281 1.26074 1.06715 0.99996 0.98341 1.84096 1.65395 0.99531 1.07987 1.24720 1.14145 0.96315 0.94714 1.98375 1.89819 1.71460 1.38687 1.19704 0.98679 1.02287 0.90558 1.20674 1.02951 0.91685 0.98444 0.92700 0.96276 0.96737 0.92194 0.92137 0.91939 0.92018 0.77181 0.77052 0.88801 0.88839 0.89928 0.89516 0.83248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.52 -14.69 9.66 -34.44 -0.33 -15.03 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 9 C -0.01 -0.25 4.04 -27.88 -0.11 -0.37 16 10 C -0.11 -2.09 5.27 -26.73 -0.14 -2.23 16 11 C 0.13 2.21 5.67 -4.04 -0.02 2.19 16 12 N -0.74 -10.00 5.56 -65.23 -0.36 -10.36 16 13 C 0.70 9.89 8.56 -86.91 -0.74 9.15 16 14 O -0.59 -10.70 16.02 5.29 0.08 -10.61 16 15 N -0.74 -7.15 5.11 -58.19 -0.30 -7.45 16 16 C 0.23 2.01 3.21 -67.44 -0.22 1.79 16 17 H 0.10 1.07 7.60 -51.93 -0.39 0.68 16 18 C -0.12 -0.61 6.70 -25.50 -0.17 -0.78 16 19 C -0.04 -0.23 6.81 -26.54 -0.18 -0.41 16 20 C -0.19 -1.59 7.35 -35.08 -0.26 -1.85 16 21 S 0.17 1.42 23.34 -107.50 -2.51 -1.09 16 22 C -0.16 -1.67 7.05 28.85 0.20 -1.47 16 23 Cl -0.01 -0.12 29.28 -51.86 -1.52 -1.64 16 24 C -0.08 -0.94 10.10 -40.81 -0.41 -1.35 16 25 C -0.12 -1.26 6.19 -104.40 -0.65 -1.91 16 26 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 27 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 28 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.39 4.21 8.49 -40.82 -0.35 3.86 16 34 H 0.40 2.67 8.63 -40.82 -0.35 2.32 16 35 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.09 0.33 8.07 -51.93 -0.42 -0.09 16 37 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 38 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.15 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 356.48 15.07 5.37 5.37 Total: -1.00 -33.82 356.48 -11.51 -45.32 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -5.25 Total: 0.76 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: -3.13 Total: -10.42 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: 0.11 Total: -44.84 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.08 Total: -10.61 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -2.51 Total: -1.09 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -1.52 Total: -1.64 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.82 -11.51 -45.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357752390.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.815 kcal (2) G-P(sol) polarization free energy of solvation -33.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds