Wall clock time and date at job start Tue Mar 31 2020 15:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99823 * 2 1 4 4 H 1.48500 * 109.46973 * 269.99545 * 3 2 1 5 5 H 1.48504 * 109.47027 * 29.99723 * 3 2 1 6 6 H 1.48497 * 109.46950 * 149.99762 * 3 2 1 7 7 C 1.37879 * 120.00216 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99756 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99926 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.47210 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47298 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.46851 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99614 * 179.97438 * 12 11 10 14 14 O 1.21588 * 120.00178 * 0.02562 * 13 12 11 15 15 N 1.34784 * 119.99964 * 180.02562 * 13 12 11 16 16 C 1.46493 * 119.99864 * 179.73002 * 15 13 12 17 17 H 1.09001 * 110.29424 * 34.29589 * 16 15 13 18 18 C 1.54143 * 110.32713 * 156.43010 * 16 15 13 19 19 C 1.54220 * 101.72256 * 92.31505 * 18 16 15 20 20 C 1.52127 * 104.83863 * 26.48462 * 19 18 16 21 21 S 1.76527 * 139.37378 * 162.56891 * 20 19 18 22 22 C 1.75574 * 91.09634 * 180.02562 * 21 20 19 23 23 Cl 1.73600 * 125.18261 * 179.97438 * 22 21 20 24 24 C 1.32747 * 109.63925 * 359.97438 * 22 21 20 25 25 C 1.34041 * 110.71360 * 342.59402 * 20 19 18 26 26 H 0.96996 * 120.00505 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47545 * 60.00592 * 9 7 2 28 28 H 1.08994 * 109.47229 * 300.00383 * 9 7 2 29 29 H 1.09001 * 109.46675 * 59.99702 * 10 9 7 30 30 H 1.09006 * 109.46802 * 300.00334 * 10 9 7 31 31 H 1.09000 * 109.46986 * 59.99805 * 11 10 9 32 32 H 1.09002 * 109.46857 * 299.99671 * 11 10 9 33 33 H 0.96996 * 120.00499 * 0.02562 * 12 11 10 34 34 H 0.97000 * 119.99339 * 0.02562 * 15 13 12 35 35 H 1.08999 * 110.97972 * 210.42548 * 18 16 15 36 36 H 1.09005 * 110.97267 * 334.17359 * 18 16 15 37 37 H 1.08994 * 110.36698 * 145.32359 * 19 18 16 38 38 H 1.09002 * 110.36566 * 267.64361 * 19 18 16 39 39 H 1.07997 * 122.19919 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0010 11 6 5.5517 -2.6364 0.0022 12 7 6.0400 -4.0176 0.0027 13 6 7.3650 -4.2638 0.0033 14 8 8.1551 -3.3396 0.0039 15 7 7.8144 -5.5346 0.0032 16 6 9.2547 -5.8021 -0.0021 17 1 9.7829 -5.0400 0.5708 18 6 9.5414 -7.2017 0.5766 19 6 9.5438 -8.0726 -0.6961 20 6 9.9386 -7.1231 -1.8172 21 16 10.5444 -7.1848 -3.4741 22 6 10.5542 -5.4317 -3.5716 23 17 11.0472 -4.5097 -4.9574 24 6 10.1272 -4.9187 -2.4241 25 6 9.7807 -5.8478 -1.4360 26 1 -0.4851 0.8400 -0.0004 27 1 3.8746 -0.6800 0.8912 28 1 3.8752 -0.6803 -0.8887 29 1 3.6586 -3.1501 -0.8892 30 1 3.6579 -3.1505 0.8908 31 1 5.9142 -2.1229 0.8927 32 1 5.9156 -2.1223 -0.8873 33 1 5.4097 -4.7549 0.0019 34 1 7.1840 -6.2718 0.0024 35 1 10.5132 -7.2286 1.0696 36 1 8.7506 -7.5108 1.2602 37 1 10.2745 -8.8761 -0.6046 38 1 8.5498 -8.4816 -0.8778 39 1 10.0528 -3.8536 -2.2622 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357752390.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:30 Heat of formation + Delta-G solvation = -28.858778 kcal Electronic energy + Delta-G solvation = -22260.231533 eV Core-core repulsion = 18740.206757 eV Total energy + Delta-G solvation = -3520.024777 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.48181 -40.06166 -38.00632 -37.01312 -35.95313 -35.12943 -34.14653 -33.02659 -29.32694 -28.68168 -27.82210 -24.66807 -23.67532 -22.29583 -22.18288 -21.79407 -19.87606 -19.36429 -18.90674 -18.50791 -17.39421 -16.82023 -16.47091 -16.24141 -15.88253 -15.66332 -15.38874 -15.00003 -14.83482 -14.70223 -14.51984 -14.18804 -13.79481 -13.65304 -13.13440 -12.90666 -12.73262 -12.69021 -12.57926 -12.40832 -12.08921 -11.94472 -11.88156 -11.77619 -11.76222 -11.58598 -11.32782 -11.25274 -10.76014 -10.39167 -9.81127 -9.58098 -9.42094 -8.29324 -6.32901 -0.25369 -0.03368 0.74121 1.09997 1.27965 1.36924 1.38427 1.50340 1.92008 2.18352 2.36434 3.06570 3.37872 3.42561 3.54509 4.04436 4.11808 4.20573 4.23380 4.35655 4.51775 4.52904 4.68501 4.70270 4.88738 4.91208 4.92696 5.04874 5.06217 5.11161 5.17185 5.30400 5.43083 5.54141 5.56209 5.57012 5.65676 6.04094 6.27863 6.75089 7.13873 7.31984 7.61755 8.87074 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.015679 B = 0.002365 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.421559 B =11838.348766 C =12944.976099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.005 3.995 3 Si 0.946 3.054 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.248 1.248 7 C -0.529 4.529 8 H 0.039 0.961 9 C -0.012 4.012 10 C -0.098 4.098 11 C 0.148 3.852 12 N -0.733 5.733 13 C 0.698 3.302 14 O -0.635 6.635 15 N -0.720 5.720 16 C 0.220 3.780 17 H 0.077 0.923 18 C -0.109 4.109 19 C -0.043 4.043 20 C -0.176 4.176 21 S 0.200 5.800 22 C -0.175 4.175 23 Cl -0.017 7.017 24 C -0.099 4.099 25 C -0.156 4.156 26 H 0.266 0.734 27 H 0.021 0.979 28 H 0.017 0.983 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.411 0.589 34 H 0.413 0.587 35 H 0.107 0.893 36 H 0.116 0.884 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.788 -22.618 -2.687 34.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.769 3.231 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.171 1.171 7 C -0.567 4.567 8 H 0.057 0.943 9 C -0.050 4.050 10 C -0.136 4.136 11 C 0.023 3.977 12 N -0.388 5.388 13 C 0.398 3.602 14 O -0.516 6.516 15 N -0.376 5.376 16 C 0.112 3.888 17 H 0.095 0.905 18 C -0.148 4.148 19 C -0.082 4.082 20 C -0.295 4.295 21 S 0.464 5.536 22 C -0.318 4.318 23 Cl 0.011 6.989 24 C -0.132 4.132 25 C -0.169 4.169 26 H 0.075 0.925 27 H 0.040 0.960 28 H 0.036 0.964 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.247 0.753 34 H 0.250 0.750 35 H 0.126 0.874 36 H 0.134 0.866 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 26.794 -22.731 -3.862 35.349 hybrid contribution -1.099 2.165 0.310 2.448 sum 25.695 -20.566 -3.552 33.103 Atomic orbital electron populations 1.70051 1.08179 1.28117 1.52769 1.25966 0.95574 1.03366 0.94264 0.85722 0.79574 0.78639 0.79128 1.19404 1.20972 1.17117 1.21463 0.91859 0.93273 1.50126 0.94296 1.19465 0.94090 0.94738 0.96743 1.21465 0.91947 0.98027 1.02168 1.21104 0.94002 0.81662 1.00924 1.45040 1.05131 1.09407 1.79251 1.16195 0.82603 0.83966 0.77421 1.90888 1.56100 1.44906 1.59693 1.44996 1.07853 1.05397 1.79323 1.20252 0.79349 0.99858 0.89291 0.90517 1.22643 1.05575 0.89547 0.97018 1.21112 1.03784 0.95895 0.87449 1.26602 1.04177 1.00199 0.98535 1.83960 1.64596 0.96992 1.08045 1.24907 1.14553 0.97905 0.94402 1.98364 1.89862 1.71923 1.38751 1.19715 1.00052 1.01507 0.91882 1.20744 1.04958 0.92176 0.99007 0.92510 0.96040 0.96440 0.91865 0.91486 0.92691 0.93211 0.75302 0.74957 0.87446 0.86555 0.87509 0.87580 0.85938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.53 13.96 21.45 0.30 -59.23 16 2 C 0.01 0.30 5.47 84.65 0.46 0.76 16 3 Si 0.95 44.75 27.47 68.60 1.88 46.63 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 6 H -0.25 -10.97 6.54 99.48 0.65 -10.32 16 7 C -0.53 -30.10 9.66 25.60 0.25 -29.85 16 8 H 0.04 2.40 7.99 -2.91 -0.02 2.37 16 9 C -0.01 -0.57 4.04 29.85 0.12 -0.45 16 10 C -0.10 -3.54 5.27 30.60 0.16 -3.38 16 11 C 0.15 4.78 5.67 86.38 0.49 5.27 16 12 N -0.73 -18.80 5.56 -478.54 -2.66 -21.46 16 13 C 0.70 19.15 8.56 179.05 1.53 20.68 16 14 O -0.63 -23.41 16.02 -3.99 -0.06 -23.48 16 15 N -0.72 -12.61 5.11 -456.28 -2.33 -14.94 16 16 C 0.22 3.61 3.21 45.31 0.15 3.76 16 17 H 0.08 1.64 7.60 -2.39 -0.02 1.62 16 18 C -0.11 -0.67 6.70 31.39 0.21 -0.46 16 19 C -0.04 -0.25 6.81 30.72 0.21 -0.04 16 20 C -0.18 -2.47 7.35 25.19 0.19 -2.29 16 21 S 0.20 3.08 23.34 -56.49 -1.32 1.76 16 22 C -0.17 -3.76 7.05 66.64 0.47 -3.29 16 23 Cl -0.02 -0.37 29.28 -2.72 -0.08 -0.45 16 24 C -0.10 -2.40 10.10 21.52 0.22 -2.19 16 25 C -0.16 -3.04 6.19 -19.72 -0.12 -3.16 16 26 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 27 H 0.02 0.98 7.20 -2.39 -0.02 0.96 16 28 H 0.02 0.79 7.57 -2.39 -0.02 0.77 16 29 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 31 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.41 7.85 8.49 -92.71 -0.79 7.06 16 34 H 0.41 4.28 8.63 -92.71 -0.80 3.48 16 35 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.12 0.25 8.07 -2.38 -0.02 0.23 16 37 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 38 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.12 3.52 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -75.89 356.48 -0.49 -76.38 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -0.55 Total: 9.41 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: 4.33 Total: -14.62 kcal Atomic # 7 Polarization: -90.94 SS G_CDS: -4.69 Total: -95.63 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.06 Total: -23.48 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.88 Total: 46.63 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -1.32 Total: 1.76 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -0.08 Total: -0.45 kcal Total: -75.89 -0.49 -76.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357752390.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.522 kcal (2) G-P(sol) polarization free energy of solvation -75.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds