Wall clock time and date at job start Tue Mar 31 2020 15:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86810 * 119.99638 * 2 1 4 4 H 1.48497 * 109.46921 * 239.99820 * 3 2 1 5 5 H 1.48501 * 109.47117 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46947 * 119.99689 * 3 2 1 7 7 C 1.37867 * 120.00354 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00308 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00157 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47488 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47064 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.46968 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00087 * 180.02562 * 12 11 10 14 14 O 1.21590 * 119.99822 * 359.97438 * 13 12 11 15 15 N 1.34770 * 120.00012 * 179.97438 * 13 12 11 16 16 C 1.46497 * 120.00126 * 179.97438 * 15 13 12 17 17 H 1.09000 * 110.37097 * 324.26961 * 16 15 13 18 18 C 1.54132 * 110.31970 * 202.07390 * 16 15 13 19 19 C 1.54217 * 101.72785 * 267.69488 * 18 16 15 20 20 C 1.52122 * 104.83890 * 333.52981 * 19 18 16 21 21 S 1.76538 * 139.37402 * 197.71014 * 20 19 18 22 22 C 1.75574 * 91.09762 * 179.97438 * 21 20 19 23 23 Cl 1.73599 * 125.18331 * 179.97438 * 22 21 20 24 24 C 1.32748 * 109.63872 * 359.71873 * 22 21 20 25 25 C 1.33786 * 110.68025 * 17.39309 * 20 19 18 26 26 H 0.96999 * 120.00590 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46919 * 60.00332 * 9 7 2 28 28 H 1.08998 * 109.47433 * 300.00326 * 9 7 2 29 29 H 1.09000 * 109.46946 * 60.00133 * 10 9 7 30 30 H 1.08998 * 109.46874 * 300.00452 * 10 9 7 31 31 H 1.08990 * 109.47554 * 60.00042 * 11 10 9 32 32 H 1.09001 * 109.47029 * 299.99254 * 11 10 9 33 33 H 0.96997 * 119.99764 * 359.97438 * 12 11 10 34 34 H 0.97002 * 120.00252 * 359.97438 * 15 13 12 35 35 H 1.09000 * 110.97516 * 149.58726 * 18 16 15 36 36 H 1.08996 * 111.01453 * 25.82023 * 18 16 15 37 37 H 1.08996 * 110.37151 * 214.68694 * 19 18 16 38 38 H 1.08999 * 110.45746 * 92.40981 * 19 18 16 39 39 H 1.07996 * 122.20386 * 180.26326 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0045 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0027 11 6 1.4805 -4.9870 0.0033 12 7 2.4326 -6.1005 0.0049 13 6 1.9834 -7.3712 0.0051 14 8 0.7880 -7.5934 0.0044 15 7 2.8592 -8.3955 0.0061 16 6 2.3710 -9.7767 0.0068 17 1 1.4623 -9.8576 0.6033 18 6 3.4553 -10.7274 0.5510 19 6 4.1735 -11.1578 -0.7441 20 6 3.1236 -11.0192 -1.8362 21 16 2.8265 -11.5703 -3.4868 22 6 1.3043 -10.6970 -3.5403 23 17 0.2221 -10.6554 -4.8971 24 6 1.1043 -10.0777 -2.3833 25 6 2.1110 -10.2487 -1.4230 26 1 -0.4851 0.8400 -0.0004 27 1 0.6242 -2.5575 -0.8880 28 1 0.6248 -2.5563 0.8919 29 1 2.8721 -3.6034 0.8927 30 1 2.8721 -3.6049 -0.8873 31 1 0.8542 -5.0454 -0.8868 32 1 0.8536 -5.0443 0.8932 33 1 3.3862 -5.9232 0.0051 34 1 3.8129 -8.2183 0.0062 35 1 3.0066 -11.5852 1.0519 36 1 4.1373 -10.2011 1.2188 37 1 4.5065 -12.1928 -0.6673 38 1 5.0200 -10.5017 -0.9464 39 1 0.2235 -9.4822 -2.1939 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357752391.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:33 Heat of formation + Delta-G solvation = -9.747456 kcal Electronic energy + Delta-G solvation = -22212.956414 eV Core-core repulsion = 18693.760366 eV Total energy + Delta-G solvation = -3519.196047 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.59627 -39.05754 -37.17627 -35.53249 -35.00977 -33.44872 -33.03435 -31.05726 -28.18778 -27.72502 -26.29407 -23.23938 -22.83090 -21.56633 -20.89142 -20.42485 -19.05339 -18.25586 -17.74726 -16.59165 -16.22576 -15.63612 -15.28779 -15.09674 -14.65885 -14.47122 -14.22119 -13.89367 -13.85626 -13.72732 -13.35133 -12.53977 -12.27212 -12.16188 -12.04989 -11.81735 -11.77371 -11.58208 -11.52479 -11.26807 -10.95856 -10.87832 -10.71303 -10.61569 -10.11883 -9.84859 -9.44167 -9.30138 -9.13091 -8.82297 -8.70496 -8.61475 -8.36269 -6.00924 -4.04195 0.52592 0.71997 1.49654 1.91268 2.15108 2.93799 3.32305 3.34902 3.37139 3.38958 4.00507 4.14323 4.36159 4.45915 4.58410 4.71613 4.96967 5.09905 5.29671 5.34684 5.39508 5.45279 5.57018 5.60461 5.72364 5.82411 5.85205 6.08192 6.19235 6.39600 6.53557 6.63287 6.80052 7.03038 7.06073 7.64394 7.77630 7.97869 8.13820 8.38732 8.74665 9.02332 9.59891 11.10349 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.016225 B = 0.002231 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.343850 B =12549.502080 C =13569.299569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.135 3.865 12 N -0.741 5.741 13 C 0.701 3.299 14 O -0.589 6.589 15 N -0.740 5.740 16 C 0.225 3.775 17 H 0.100 0.900 18 C -0.123 4.123 19 C -0.045 4.045 20 C -0.193 4.193 21 S 0.162 5.838 22 C -0.156 4.156 23 Cl -0.012 7.012 24 C -0.080 4.080 25 C -0.122 4.122 26 H 0.262 0.738 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.393 0.607 34 H 0.395 0.605 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.703 -28.408 -3.236 30.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.158 4.158 11 C 0.012 3.988 12 N -0.395 5.395 13 C 0.401 3.599 14 O -0.467 6.467 15 N -0.396 5.396 16 C 0.117 3.883 17 H 0.118 0.882 18 C -0.162 4.162 19 C -0.084 4.084 20 C -0.311 4.311 21 S 0.426 5.574 22 C -0.298 4.298 23 Cl 0.017 6.983 24 C -0.112 4.112 25 C -0.136 4.136 26 H 0.071 0.929 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.226 0.774 34 H 0.229 0.771 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 9.056 -29.367 -4.436 31.051 hybrid contribution 0.335 2.113 0.561 2.212 sum 9.391 -27.254 -3.876 29.086 Atomic orbital electron populations 1.69953 1.06054 1.26805 1.50466 1.25025 0.94852 0.99273 0.95284 0.86647 0.79568 0.83135 0.78571 1.20261 1.21264 1.20246 1.21165 0.92938 0.90972 1.51057 0.92724 1.19020 0.93845 0.90785 0.97677 1.21887 0.99783 0.93357 1.00783 1.21509 0.91278 0.84128 1.01867 1.45391 1.10440 1.04449 1.79215 1.16022 0.85352 0.80757 0.77756 1.90915 1.14031 1.84038 1.57672 1.45152 1.08887 1.04492 1.81072 1.20036 0.98150 0.80024 0.90063 0.88159 1.22594 0.97415 0.99494 0.96686 1.20889 0.95145 1.02784 0.89593 1.25985 1.02157 1.04658 0.98314 1.84081 1.14345 1.49916 1.09012 1.24719 0.99539 1.10545 0.95036 1.98375 1.61252 1.97538 1.41173 1.19782 1.01030 0.99725 0.90630 1.20661 0.94129 1.00236 0.98574 0.92858 0.96262 0.96255 0.92776 0.92821 0.91997 0.91932 0.77366 0.77120 0.88800 0.88876 0.89976 0.89557 0.83143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 11 C 0.14 2.40 5.67 -4.04 -0.02 2.38 16 12 N -0.74 -10.54 5.56 -65.23 -0.36 -10.90 16 13 C 0.70 10.33 8.56 -86.93 -0.74 9.59 16 14 O -0.59 -11.12 16.04 5.29 0.08 -11.04 16 15 N -0.74 -7.49 5.12 -58.20 -0.30 -7.79 16 16 C 0.23 2.10 3.19 -67.44 -0.22 1.89 16 17 H 0.10 1.11 7.65 -51.93 -0.40 0.71 16 18 C -0.12 -0.64 6.69 -25.50 -0.17 -0.81 16 19 C -0.04 -0.24 6.80 -26.54 -0.18 -0.42 16 20 C -0.19 -1.66 7.35 -35.17 -0.26 -1.92 16 21 S 0.16 1.45 23.34 -107.50 -2.51 -1.06 16 22 C -0.16 -1.73 7.05 28.85 0.20 -1.52 16 23 Cl -0.01 -0.13 29.28 -51.86 -1.52 -1.65 16 24 C -0.08 -0.97 10.12 -40.73 -0.41 -1.39 16 25 C -0.12 -1.29 6.18 -104.41 -0.64 -1.94 16 26 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.39 4.41 8.49 -40.82 -0.35 4.07 16 34 H 0.39 2.81 8.60 -40.82 -0.35 2.46 16 35 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 0.35 8.05 -51.93 -0.42 -0.07 16 37 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.15 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 360.09 15.07 5.43 5.43 Total: -1.00 -33.42 360.09 -11.88 -45.30 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -5.28 Total: 0.96 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -3.14 Total: -9.55 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: 0.08 Total: -44.88 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.08 Total: -11.04 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -2.51 Total: -1.06 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -1.52 Total: -1.65 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.42 -11.88 -45.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357752391.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.552 kcal (2) G-P(sol) polarization free energy of solvation -33.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds