Wall clock time and date at job start Tue Mar 31 2020 15:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 119.99805 * 2 1 4 4 H 1.48506 * 109.47267 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47530 * 300.00143 * 3 2 1 6 6 H 1.48506 * 109.47286 * 60.00282 * 3 2 1 7 7 C 1.37871 * 120.00339 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00261 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99939 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46948 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46950 * 180.02562 * 10 9 7 12 12 N 1.30966 * 126.43240 * 90.31052 * 11 10 9 13 13 C 1.35249 * 105.57798 * 180.09569 * 12 11 10 14 14 C 1.48305 * 126.42196 * 179.88375 * 13 12 11 15 15 C 1.39336 * 120.15091 * 359.68661 * 14 13 12 16 16 C 1.37963 * 119.93069 * 180.02562 * 15 14 13 17 17 C 1.38426 * 120.24883 * 0.02562 * 16 15 14 18 18 C 1.38145 * 120.30737 * 359.97438 * 17 16 15 19 19 C 1.38630 * 120.06269 * 0.02562 * 18 17 16 20 20 O 1.35796 * 120.12244 * 179.97438 * 19 18 17 21 21 C 1.42905 * 116.99910 * 359.97438 * 20 19 18 22 22 F 1.39894 * 109.47285 * 60.00155 * 21 20 19 23 23 F 1.39902 * 109.47046 * 180.02562 * 21 20 19 24 24 F 1.39904 * 109.47002 * 300.00146 * 21 20 19 25 25 N 1.30822 * 107.16005 * 359.61813 * 13 12 11 26 26 O 1.21294 * 110.08336 * 0.24043 * 25 13 12 27 27 H 0.96999 * 120.00122 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46988 * 60.00151 * 9 7 2 29 29 H 1.08995 * 109.47158 * 300.00288 * 9 7 2 30 30 H 1.08994 * 109.47468 * 59.99833 * 10 9 7 31 31 H 1.09004 * 109.47083 * 299.99768 * 10 9 7 32 32 H 1.07993 * 120.03444 * 0.02574 * 15 14 13 33 33 H 1.07996 * 119.87892 * 180.02562 * 16 15 14 34 34 H 1.07991 * 119.84668 * 180.27170 * 17 16 15 35 35 H 1.08000 * 119.96153 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4919 -4.9672 -0.0012 12 7 1.1084 -5.6433 -1.0552 13 6 0.4722 -6.7356 -0.5742 14 6 -0.1504 -7.8165 -1.3765 15 6 -0.1188 -7.7618 -2.7684 16 6 -0.6999 -8.7695 -3.5103 17 6 -1.3153 -9.8355 -2.8770 18 6 -1.3525 -9.8999 -1.4976 19 6 -0.7727 -8.8944 -0.7396 20 8 -0.8090 -8.9561 0.6165 21 6 -1.4623 -10.0867 1.1972 22 9 -0.8202 -11.2591 0.7846 23 9 -1.4083 -9.9910 2.5919 24 9 -2.7985 -10.1165 0.7836 25 7 0.5139 -6.6631 0.7313 26 8 1.0951 -5.6551 1.0740 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8896 30 1 2.8721 -3.6042 0.8894 31 1 2.8720 -3.6042 -0.8906 32 1 0.3600 -6.9315 -3.2660 33 1 -0.6746 -8.7265 -4.5891 34 1 -1.7643 -10.6229 -3.4641 35 1 -1.8345 -10.7339 -1.0093 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361017021.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:08 Heat of formation + Delta-G solvation = -106.758380 kcal Electronic energy + Delta-G solvation = -27121.177931 eV Core-core repulsion = 22479.765317 eV Total energy + Delta-G solvation = -4641.412613 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.69803 -48.38475 -48.30760 -45.12739 -40.57538 -37.98970 -35.64486 -34.54945 -32.74003 -31.28667 -30.79628 -29.88316 -26.36246 -25.83562 -24.77825 -23.32408 -22.60755 -21.92876 -20.75006 -19.82079 -19.42037 -19.14126 -17.74461 -17.49441 -16.86408 -16.45462 -16.06055 -15.51522 -15.45262 -15.04434 -14.78501 -14.72400 -14.69928 -14.67153 -14.54830 -14.40956 -14.01560 -13.81215 -13.42682 -13.23985 -12.67723 -12.45588 -12.20701 -11.96113 -11.69851 -11.60643 -11.41681 -11.02871 -10.81480 -10.67542 -10.23321 -10.15474 -9.54379 -9.29762 -9.13277 -8.67853 -8.46815 -6.10721 -4.15555 0.50285 0.86351 1.23233 1.68297 2.53261 2.59786 3.27073 3.28297 3.35412 3.38369 3.39578 3.51295 3.57838 3.74858 4.10877 4.34698 4.38308 4.52241 4.72464 4.94455 5.05914 5.26081 5.28092 5.46188 5.64622 5.83094 5.93940 6.00375 6.08558 6.16132 6.21016 6.34305 6.52530 6.60103 7.47852 7.54138 7.84798 8.19877 8.50430 8.89985 9.49624 11.00530 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.019645 B = 0.002697 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.947836 B =10378.631367 C =11139.824774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.525 4.525 8 H 0.062 0.938 9 C 0.027 3.973 10 C -0.029 4.029 11 C 0.218 3.782 12 N -0.487 5.487 13 C 0.194 3.806 14 C -0.014 4.014 15 C -0.041 4.041 16 C -0.139 4.139 17 C -0.066 4.066 18 C -0.196 4.196 19 C 0.133 3.867 20 O -0.288 6.288 21 C 0.601 3.399 22 F -0.167 7.167 23 F -0.128 7.128 24 F -0.166 7.166 25 N -0.369 5.369 26 O 0.077 5.923 27 H 0.262 0.738 28 H 0.027 0.973 29 H 0.024 0.976 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.152 0.848 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.669 -22.911 -3.677 23.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.564 4.564 8 H 0.081 0.919 9 C -0.011 4.011 10 C -0.068 4.068 11 C -0.002 4.002 12 N -0.220 5.220 13 C -0.076 4.076 14 C -0.016 4.016 15 C -0.061 4.061 16 C -0.157 4.157 17 C -0.085 4.085 18 C -0.215 4.215 19 C 0.088 3.912 20 O -0.206 6.206 21 C 0.511 3.489 22 F -0.149 7.149 23 F -0.110 7.110 24 F -0.148 7.148 25 N -0.076 5.076 26 O 0.016 5.984 27 H 0.072 0.928 28 H 0.045 0.955 29 H 0.043 0.957 30 H 0.111 0.889 31 H 0.119 0.881 32 H 0.170 0.830 33 H 0.157 0.843 34 H 0.155 0.845 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.142 -23.380 -3.399 23.833 hybrid contribution 0.158 0.770 0.277 0.833 sum -2.984 -22.610 -3.123 23.018 Atomic orbital electron populations 1.69974 1.06162 1.26883 1.49900 1.25012 0.94866 0.99466 0.94917 0.86456 0.80058 0.83359 0.77651 1.19546 1.20951 1.20935 1.21100 0.93200 0.90168 1.51882 0.91950 1.19174 0.93587 0.89832 0.98546 1.20791 0.97966 0.83486 1.04527 1.29584 0.94120 0.96989 0.79465 1.71992 1.16494 1.04626 1.28889 1.23504 1.00755 0.95399 0.87895 1.16635 1.02257 0.90744 0.91953 1.21225 0.95702 0.98718 0.90411 1.21193 0.99432 0.94205 1.00830 1.21096 0.96389 0.97897 0.93068 1.21435 1.04862 0.99260 0.95895 1.18615 0.98036 0.95512 0.79079 1.86654 1.72428 1.40751 1.20792 1.19429 0.75461 0.77045 0.77004 1.93288 1.81826 1.49630 1.90177 1.93323 1.96093 1.95744 1.25794 1.93297 1.35445 1.95948 1.90135 1.74999 1.14715 1.03361 1.14527 1.85299 1.52033 1.24754 1.36276 0.92788 0.95481 0.95745 0.88935 0.88091 0.83011 0.84307 0.84512 0.84398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.95 13.29 55.43 0.74 -25.21 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 20.73 29.54 -169.99 -5.02 15.70 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.53 -13.86 9.11 -34.44 -0.31 -14.17 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 9 C 0.03 0.65 4.96 -27.88 -0.14 0.51 16 10 C -0.03 -0.54 5.78 -27.88 -0.16 -0.70 16 11 C 0.22 4.12 7.75 -12.98 -0.10 4.01 16 12 N -0.49 -9.19 11.26 -9.87 -0.11 -9.30 16 13 C 0.19 3.51 7.78 -156.09 -1.21 2.30 16 14 C -0.01 -0.20 5.89 -104.76 -0.62 -0.82 16 15 C -0.04 -0.49 9.70 -39.27 -0.38 -0.87 16 16 C -0.14 -1.22 10.03 -39.61 -0.40 -1.61 16 17 C -0.07 -0.55 10.03 -39.55 -0.40 -0.94 16 18 C -0.20 -2.03 8.25 -39.47 -0.33 -2.36 16 19 C 0.13 1.80 6.49 -38.85 -0.25 1.54 16 20 O -0.29 -4.15 8.72 -19.10 -0.17 -4.32 16 21 C 0.60 6.93 3.42 101.05 0.35 7.28 16 22 F -0.17 -1.73 15.56 2.25 0.04 -1.69 16 23 F -0.13 -1.51 17.53 2.25 0.04 -1.47 16 24 F -0.17 -1.78 15.56 2.25 0.04 -1.75 16 25 N -0.37 -7.04 10.70 30.98 0.33 -6.70 16 26 O 0.08 1.47 11.29 18.03 0.20 1.67 16 27 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 31 H 0.10 1.78 8.14 -51.93 -0.42 1.35 16 32 H 0.15 1.77 7.88 -52.49 -0.41 1.35 16 33 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 35 H 0.14 1.23 5.10 -52.49 -0.27 0.96 16 LS Contribution 327.12 15.07 4.93 4.93 Total: -1.00 -30.55 327.12 -5.79 -36.34 By element: Atomic # 1 Polarization: -1.17 SS G_CDS: -2.76 Total: -3.93 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -4.05 Total: -4.28 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 0.96 Total: -41.22 kcal Atomic # 8 Polarization: -2.68 SS G_CDS: 0.04 Total: -2.64 kcal Atomic # 9 Polarization: -5.02 SS G_CDS: 0.11 Total: -4.91 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.55 -5.79 -36.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361017021.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.415 kcal (2) G-P(sol) polarization free energy of solvation -30.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds