Wall clock time and date at job start Tue Mar 31 2020 15:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 119.99805 * 2 1 4 4 H 1.48506 * 109.47267 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47530 * 300.00143 * 3 2 1 6 6 H 1.48506 * 109.47286 * 60.00282 * 3 2 1 7 7 C 1.37871 * 120.00339 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00261 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99939 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46948 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46950 * 180.02562 * 10 9 7 12 12 N 1.30966 * 126.43240 * 90.31052 * 11 10 9 13 13 C 1.35249 * 105.57798 * 180.09569 * 12 11 10 14 14 C 1.48305 * 126.42196 * 179.88375 * 13 12 11 15 15 C 1.39336 * 120.15091 * 359.68661 * 14 13 12 16 16 C 1.37963 * 119.93069 * 180.02562 * 15 14 13 17 17 C 1.38426 * 120.24883 * 0.02562 * 16 15 14 18 18 C 1.38145 * 120.30737 * 359.97438 * 17 16 15 19 19 C 1.38630 * 120.06269 * 0.02562 * 18 17 16 20 20 O 1.35796 * 120.12244 * 179.97438 * 19 18 17 21 21 C 1.42905 * 116.99910 * 359.97438 * 20 19 18 22 22 F 1.39894 * 109.47285 * 60.00155 * 21 20 19 23 23 F 1.39902 * 109.47046 * 180.02562 * 21 20 19 24 24 F 1.39904 * 109.47002 * 300.00146 * 21 20 19 25 25 N 1.30822 * 107.16005 * 359.61813 * 13 12 11 26 26 O 1.21294 * 110.08336 * 0.24043 * 25 13 12 27 27 H 0.96999 * 120.00122 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46988 * 60.00151 * 9 7 2 29 29 H 1.08995 * 109.47158 * 300.00288 * 9 7 2 30 30 H 1.08994 * 109.47468 * 59.99833 * 10 9 7 31 31 H 1.09004 * 109.47083 * 299.99768 * 10 9 7 32 32 H 1.07993 * 120.03444 * 0.02574 * 15 14 13 33 33 H 1.07996 * 119.87892 * 180.02562 * 16 15 14 34 34 H 1.07991 * 119.84668 * 180.27170 * 17 16 15 35 35 H 1.08000 * 119.96153 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4919 -4.9672 -0.0012 12 7 1.1084 -5.6433 -1.0552 13 6 0.4722 -6.7356 -0.5742 14 6 -0.1504 -7.8165 -1.3765 15 6 -0.1188 -7.7618 -2.7684 16 6 -0.6999 -8.7695 -3.5103 17 6 -1.3153 -9.8355 -2.8770 18 6 -1.3525 -9.8999 -1.4976 19 6 -0.7727 -8.8944 -0.7396 20 8 -0.8090 -8.9561 0.6165 21 6 -1.4623 -10.0867 1.1972 22 9 -0.8202 -11.2591 0.7846 23 9 -1.4083 -9.9910 2.5919 24 9 -2.7985 -10.1165 0.7836 25 7 0.5139 -6.6631 0.7313 26 8 1.0951 -5.6551 1.0740 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8896 30 1 2.8721 -3.6042 0.8894 31 1 2.8720 -3.6042 -0.8906 32 1 0.3600 -6.9315 -3.2660 33 1 -0.6746 -8.7265 -4.5891 34 1 -1.7643 -10.6229 -3.4641 35 1 -1.8345 -10.7339 -1.0093 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361017021.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:07 Heat of formation + Delta-G solvation = -125.460685 kcal Electronic energy + Delta-G solvation = -27121.988923 eV Core-core repulsion = 22479.765317 eV Total energy + Delta-G solvation = -4642.223606 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.58980 -49.29568 -49.17426 -46.56602 -41.49308 -38.90230 -37.08440 -36.21870 -34.48273 -32.54919 -31.83847 -31.21024 -27.77316 -27.19572 -25.94670 -24.68195 -23.67405 -23.40755 -22.13763 -20.74439 -20.31717 -20.10034 -19.21986 -18.81323 -18.36272 -17.82929 -17.11491 -16.51153 -16.44799 -16.41213 -15.95487 -15.68957 -15.65551 -15.59580 -15.58784 -15.52433 -15.29678 -14.96725 -14.63095 -14.36712 -14.26894 -13.70323 -13.62883 -13.41030 -12.85622 -12.84260 -12.81225 -12.55358 -12.41679 -12.15559 -11.95567 -11.93324 -11.32555 -11.07033 -10.57006 -10.07151 -9.67896 -8.19634 -6.31617 -0.50374 0.03841 0.27746 0.32299 1.33297 1.46490 1.47230 1.60264 1.61991 1.83401 2.35763 2.45865 2.49910 2.60754 2.85910 2.88045 3.16056 3.49456 3.57845 3.91205 4.08306 4.16841 4.24931 4.40157 4.46220 4.53302 4.69373 4.81587 4.91721 4.95326 5.15135 5.27670 5.30528 5.44458 5.53542 5.72267 5.78549 6.13701 6.84452 7.06277 7.38714 8.93062 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.019645 B = 0.002697 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.947836 B =10378.631367 C =11139.824774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.970 3.030 4 H -0.253 1.253 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.536 4.536 8 H 0.080 0.920 9 C 0.033 3.967 10 C -0.013 4.013 11 C 0.211 3.789 12 N -0.496 5.496 13 C 0.198 3.802 14 C -0.056 4.056 15 C -0.048 4.048 16 C -0.125 4.125 17 C -0.045 4.045 18 C -0.198 4.198 19 C 0.116 3.884 20 O -0.315 6.315 21 C 0.607 3.393 22 F -0.158 7.158 23 F -0.133 7.133 24 F -0.160 7.160 25 N -0.389 5.389 26 O 0.065 5.935 27 H 0.263 0.737 28 H -0.005 1.005 29 H -0.004 1.004 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.147 0.853 33 H 0.177 0.823 34 H 0.182 0.818 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.116 -24.321 -5.408 25.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.795 3.205 4 H -0.177 1.177 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.574 4.574 8 H 0.098 0.902 9 C -0.005 4.005 10 C -0.052 4.052 11 C -0.009 4.009 12 N -0.230 5.230 13 C -0.071 4.071 14 C -0.059 4.059 15 C -0.067 4.067 16 C -0.143 4.143 17 C -0.063 4.063 18 C -0.216 4.216 19 C 0.071 3.929 20 O -0.234 6.234 21 C 0.517 3.483 22 F -0.140 7.140 23 F -0.114 7.114 24 F -0.142 7.142 25 N -0.099 5.099 26 O 0.009 5.991 27 H 0.072 0.928 28 H 0.013 0.987 29 H 0.014 0.986 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.165 0.835 33 H 0.194 0.806 34 H 0.199 0.801 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.562 -24.792 -5.116 25.444 hybrid contribution -0.106 1.055 0.718 1.281 sum -2.669 -23.737 -4.398 24.288 Atomic orbital electron populations 1.70125 1.08107 1.27859 1.51492 1.26006 0.95665 1.03630 0.94591 0.85317 0.79432 0.78393 0.77402 1.17686 1.20835 1.20846 1.21594 0.94203 0.90875 1.50715 0.90235 1.18962 0.94001 0.91951 0.95636 1.20564 0.96687 0.81361 1.06562 1.29564 0.94343 0.97208 0.79745 1.71983 1.16826 1.05135 1.29029 1.24156 0.99559 0.95577 0.87845 1.16929 1.04869 0.91071 0.93024 1.21372 0.96202 0.99768 0.89396 1.21621 0.97438 0.92779 1.02457 1.21659 0.94179 0.98183 0.92320 1.21727 1.04310 0.98660 0.96896 1.18871 0.98879 0.96204 0.78953 1.86603 1.73034 1.42038 1.21749 1.19279 0.75545 0.76802 0.76715 1.93299 1.81717 1.48933 1.90058 1.93311 1.96125 1.95764 1.26190 1.93303 1.34967 1.95909 1.90052 1.74981 1.15905 1.03677 1.15343 1.85268 1.52421 1.25055 1.36399 0.92797 0.98661 0.98581 0.86525 0.86417 0.83493 0.80568 0.80085 0.82967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.96 13.29 21.44 0.28 -55.68 16 2 C 0.00 -0.06 5.46 84.65 0.46 0.41 16 3 Si 0.97 42.43 29.54 68.60 2.03 44.45 16 4 H -0.25 -10.27 7.11 99.48 0.71 -9.56 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 7 C -0.54 -28.36 9.11 25.60 0.23 -28.13 16 8 H 0.08 3.85 7.74 -2.91 -0.02 3.83 16 9 C 0.03 1.65 4.96 29.85 0.15 1.80 16 10 C -0.01 -0.49 5.78 29.85 0.17 -0.32 16 11 C 0.21 8.22 7.75 88.36 0.68 8.90 16 12 N -0.50 -19.30 11.26 -302.42 -3.41 -22.70 16 13 C 0.20 7.42 7.78 137.23 1.07 8.49 16 14 C -0.06 -1.69 5.89 -19.95 -0.12 -1.81 16 15 C -0.05 -1.08 9.70 22.47 0.22 -0.86 16 16 C -0.13 -1.75 10.03 22.25 0.22 -1.53 16 17 C -0.05 -0.56 10.03 22.29 0.22 -0.33 16 18 C -0.20 -3.62 8.25 22.34 0.18 -3.43 16 19 C 0.12 3.08 6.49 22.74 0.15 3.23 16 20 O -0.31 -9.23 8.72 -91.27 -0.80 -10.02 16 21 C 0.61 13.78 3.42 113.37 0.39 14.17 16 22 F -0.16 -3.09 15.56 44.97 0.70 -2.39 16 23 F -0.13 -3.14 17.53 44.97 0.79 -2.35 16 24 F -0.16 -3.29 15.56 44.97 0.70 -2.59 16 25 N -0.39 -15.50 10.70 -59.03 -0.63 -16.13 16 26 O 0.07 2.61 11.29 74.58 0.84 3.45 16 27 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 28 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 29 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 30 H 0.12 3.83 8.14 -2.39 -0.02 3.81 16 31 H 0.12 4.06 8.14 -2.39 -0.02 4.04 16 32 H 0.15 3.38 7.88 -2.91 -0.02 3.35 16 33 H 0.18 1.16 8.06 -2.91 -0.02 1.14 16 34 H 0.18 0.70 8.06 -2.92 -0.02 0.67 16 35 H 0.15 2.29 5.10 -2.91 -0.01 2.28 16 Total: -1.00 -69.06 327.12 5.71 -63.35 By element: Atomic # 1 Polarization: -1.15 SS G_CDS: 1.17 Total: 0.01 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: 4.03 Total: 0.59 kcal Atomic # 7 Polarization: -90.76 SS G_CDS: -3.75 Total: -94.51 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: 0.05 Total: -6.57 kcal Atomic # 9 Polarization: -9.52 SS G_CDS: 2.19 Total: -7.33 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.45 kcal Total: -69.06 5.71 -63.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361017021.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.111 kcal (2) G-P(sol) polarization free energy of solvation -69.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds