Wall clock time and date at job start Tue Mar 31 2020 15:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 120.00250 * 2 1 4 4 H 1.48507 * 109.47104 * 240.00403 * 3 2 1 5 5 H 1.48502 * 109.46978 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47351 * 120.00375 * 3 2 1 7 7 C 1.38817 * 119.99676 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99231 * 197.58132 * 7 2 1 9 9 N 1.36930 * 119.99895 * 17.57947 * 7 2 1 10 10 C 1.46974 * 120.59130 * 208.20827 * 9 7 2 11 11 C 1.53371 * 108.63227 * 235.24803 * 10 9 7 12 12 N 1.46958 * 108.63536 * 310.57431 * 11 10 9 13 13 C 1.34779 * 120.59285 * 235.20177 * 12 11 10 14 14 O 1.21274 * 120.00179 * 0.02562 * 13 12 11 15 15 C 1.50699 * 119.99913 * 180.02562 * 13 12 11 16 16 C 1.53001 * 109.47170 * 180.02562 * 15 13 12 17 17 C 1.50699 * 109.47170 * 180.02562 * 16 15 13 18 18 C 1.33397 * 125.19816 * 90.00010 * 17 16 15 19 19 C 1.38475 * 114.91618 * 180.02562 * 18 17 16 20 20 Cl 1.73604 * 122.55333 * 179.97438 * 19 18 17 21 21 C 1.33440 * 114.89984 * 359.97438 * 19 18 17 22 22 S 1.75882 * 109.59677 * 359.74422 * 21 19 18 23 23 C 1.46963 * 118.81465 * 55.47999 * 12 11 10 24 24 C 1.46958 * 120.59668 * 28.22862 * 9 7 2 25 25 H 0.97000 * 119.99690 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.60922 * 115.50142 * 10 9 7 27 27 H 1.08998 * 109.74911 * 355.07797 * 10 9 7 28 28 H 1.09001 * 109.60645 * 190.83040 * 11 10 9 29 29 H 1.09003 * 109.75186 * 70.40449 * 11 10 9 30 30 H 1.08998 * 109.47247 * 59.99840 * 15 13 12 31 31 H 1.09004 * 109.47232 * 300.00381 * 15 13 12 32 32 H 1.09001 * 109.46728 * 60.00047 * 16 15 13 33 33 H 1.08995 * 109.47050 * 299.99602 * 16 15 13 34 34 H 1.08002 * 122.54753 * 0.02562 * 18 17 16 35 35 H 1.08002 * 125.20328 * 179.97438 * 21 19 18 36 36 H 1.09005 * 109.60701 * 64.26276 * 23 12 11 37 37 H 1.08996 * 109.61631 * 184.77490 * 23 12 11 38 38 H 1.09002 * 109.61008 * 244.49110 * 24 9 7 39 39 H 1.08999 * 109.61423 * 4.83736 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0524 -1.2241 0.2820 9 7 1.3735 -2.3602 -0.3592 10 6 1.8122 -3.6539 0.1830 11 6 2.1173 -4.5975 -0.9869 12 7 0.9833 -4.5690 -1.9213 13 6 0.3572 -5.7089 -2.2750 14 8 0.7282 -6.7705 -1.8211 15 6 -0.8039 -5.6642 -3.2346 16 6 -1.3294 -7.0825 -3.4657 17 6 -2.4901 -7.0379 -4.4258 18 6 -2.3943 -7.1336 -5.7529 19 6 -3.5997 -7.0659 -6.4312 20 17 -3.7053 -7.1686 -8.1610 21 6 -4.6740 -6.9157 -5.6540 22 16 -4.1787 -6.8594 -3.9673 23 6 0.5482 -3.2760 -2.4678 24 6 0.2395 -2.3317 -1.2935 25 1 -0.4850 0.8401 0.0004 26 1 1.0205 -4.0796 0.7994 27 1 2.7101 -3.5154 0.7852 28 1 2.2572 -5.6114 -0.6122 29 1 3.0216 -4.2688 -1.4991 30 1 -0.4754 -5.2390 -4.1829 31 1 -1.5982 -5.0466 -2.8154 32 1 -1.6580 -7.5072 -2.5172 33 1 -0.5353 -7.7003 -3.8849 34 1 -1.4485 -7.2547 -6.2600 35 1 -5.6923 -6.8437 -6.0066 36 1 1.3428 -2.8525 -3.0821 37 1 -0.3484 -3.4170 -3.0713 38 1 -0.6642 -2.6634 -0.7822 39 1 0.0977 -1.3172 -1.6660 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362612185.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:03 Heat of formation + Delta-G solvation = 13.296511 kcal Electronic energy + Delta-G solvation = -22867.848257 eV Core-core repulsion = 19349.651471 eV Total energy + Delta-G solvation = -3518.196786 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.77385 -38.52995 -36.93309 -36.42757 -33.90928 -33.71865 -31.45019 -30.25324 -29.05450 -27.03002 -25.34527 -23.66367 -23.05053 -22.35671 -20.43139 -19.62022 -18.55644 -17.85103 -17.01949 -16.19382 -15.95461 -15.58012 -15.47576 -14.78473 -14.16860 -14.04660 -13.75410 -13.55244 -13.46422 -13.34012 -13.27531 -12.90317 -12.65107 -12.31188 -12.15975 -11.69914 -11.42232 -11.41014 -11.33120 -11.24983 -10.88004 -10.84923 -10.78627 -10.54707 -10.28064 -10.08219 -9.88908 -9.45973 -8.98592 -8.65860 -8.63282 -8.28832 -6.75907 -5.89951 -3.34108 0.56408 1.03345 1.45158 2.19366 2.32584 2.92573 3.32449 3.37987 3.38637 3.42123 4.38376 4.42330 4.71460 4.88309 4.94813 5.00969 5.13668 5.23654 5.30940 5.45131 5.51977 5.69982 5.75085 5.80900 5.82595 5.91088 5.93167 6.02996 6.08552 6.16783 6.29978 6.39252 6.74212 6.88378 7.15425 7.40878 7.68154 7.86832 8.31635 8.49613 9.07807 9.70330 10.27274 11.17867 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.017232 B = 0.002564 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.457586 B =10919.891543 C =11644.767246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.004 3.996 3 Si 0.905 3.095 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.257 4.257 8 H 0.067 0.933 9 N -0.591 5.591 10 C 0.132 3.868 11 C 0.095 3.905 12 N -0.596 5.596 13 C 0.510 3.490 14 O -0.561 6.561 15 C -0.135 4.135 16 C -0.033 4.033 17 C -0.156 4.156 18 C -0.139 4.139 19 C -0.041 4.041 20 Cl -0.056 7.056 21 C -0.220 4.220 22 S 0.151 5.849 23 C 0.078 3.922 24 C 0.157 3.843 25 H 0.256 0.744 26 H 0.023 0.977 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.150 0.850 35 H 0.173 0.827 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.024 0.976 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.977 -13.334 -12.398 19.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.195 4.195 3 Si 0.734 3.266 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.386 4.386 8 H 0.085 0.915 9 N -0.314 5.314 10 C 0.005 3.995 11 C -0.029 4.029 12 N -0.327 5.327 13 C 0.298 3.702 14 O -0.441 6.441 15 C -0.175 4.175 16 C -0.073 4.073 17 C -0.274 4.274 18 C -0.169 4.169 19 C -0.080 4.080 20 Cl -0.028 7.028 21 C -0.356 4.356 22 S 0.414 5.586 23 C -0.046 4.046 24 C 0.031 3.969 25 H 0.066 0.934 26 H 0.041 0.959 27 H 0.085 0.915 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.104 0.896 33 H 0.111 0.889 34 H 0.168 0.832 35 H 0.190 0.810 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.042 0.958 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.678 -13.561 -10.915 19.451 hybrid contribution 0.970 0.938 -1.596 2.090 sum -7.708 -12.623 -12.511 19.372 Atomic orbital electron populations 1.70004 1.05302 1.25874 1.53451 1.25069 0.95306 0.98557 1.00569 0.86336 0.78927 0.83082 0.78225 1.20929 1.21572 1.20812 1.19162 0.92861 0.84721 1.41875 0.91505 1.43976 1.36699 1.01568 1.49144 1.21292 0.98437 0.87025 0.92776 1.22203 0.87722 1.01068 0.91893 1.48081 1.32855 1.06860 1.44951 1.20464 0.83930 0.83647 0.82137 1.90640 1.67129 1.29564 1.56811 1.21680 0.97552 0.98077 1.00218 1.19926 0.93098 0.96852 0.97427 1.24537 0.98337 1.07160 0.97389 1.19856 0.98432 1.05717 0.92858 1.19770 0.94101 1.08158 0.86010 1.98367 1.98517 1.96845 1.09045 1.25567 1.02776 1.10790 0.96484 1.84571 0.99304 1.70729 1.03990 1.22801 0.99169 0.83892 0.98752 1.21259 0.89260 0.98652 0.87760 0.93400 0.95885 0.91531 0.90002 0.91992 0.88665 0.88575 0.89553 0.88854 0.83245 0.80984 0.91707 0.90932 0.95823 0.88160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.95 11.20 55.49 0.62 -24.33 16 2 C 0.00 0.10 4.90 -17.43 -0.09 0.02 16 3 Si 0.90 20.80 29.59 -169.99 -5.03 15.77 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.26 -6.72 9.58 -15.06 -0.14 -6.87 16 8 H 0.07 1.72 7.89 -52.49 -0.41 1.30 16 9 N -0.59 -14.12 2.97 -171.76 -0.51 -14.63 16 10 C 0.13 2.71 6.67 -3.59 -0.02 2.68 16 11 C 0.10 1.71 6.59 -3.60 -0.02 1.69 16 12 N -0.60 -10.33 2.94 -172.22 -0.51 -10.84 16 13 C 0.51 8.26 7.70 -10.98 -0.08 8.17 16 14 O -0.56 -10.51 15.39 5.56 0.09 -10.42 16 15 C -0.13 -1.63 4.02 -27.88 -0.11 -1.74 16 16 C -0.03 -0.37 5.00 -27.88 -0.14 -0.50 16 17 C -0.16 -1.56 5.76 -36.00 -0.21 -1.77 16 18 C -0.14 -1.35 9.94 -41.19 -0.41 -1.76 16 19 C -0.04 -0.39 6.27 -41.17 -0.26 -0.65 16 20 Cl -0.06 -0.52 29.11 -51.86 -1.51 -2.03 16 21 C -0.22 -1.93 11.08 29.05 0.32 -1.61 16 22 S 0.15 1.38 23.33 -107.50 -2.51 -1.13 16 23 C 0.08 1.34 6.53 -3.36 -0.02 1.31 16 24 C 0.16 3.46 5.54 -3.37 -0.02 3.44 16 25 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 26 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.07 1.31 7.94 -51.93 -0.41 0.89 16 28 H 0.08 1.44 6.99 -51.93 -0.36 1.08 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.10 1.01 7.90 -51.93 -0.41 0.60 16 31 H 0.10 1.13 7.73 -51.93 -0.40 0.72 16 32 H 0.09 1.00 8.10 -51.93 -0.42 0.58 16 33 H 0.09 1.02 8.10 -51.93 -0.42 0.60 16 34 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.17 1.18 8.06 -52.49 -0.42 0.75 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.07 1.02 5.91 -51.93 -0.31 0.71 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.10 2.44 5.98 -51.93 -0.31 2.13 16 LS Contribution 348.97 15.07 5.26 5.26 Total: -1.00 -29.56 348.97 -10.44 -40.00 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -5.13 Total: -0.08 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -1.21 Total: 2.42 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: -0.39 Total: -49.79 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.77 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -2.51 Total: -1.13 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.51 Total: -2.03 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.56 -10.44 -40.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362612185.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.295 kcal (2) G-P(sol) polarization free energy of solvation -29.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds