Wall clock time and date at job start Tue Mar 31 2020 15:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 120.00250 * 2 1 4 4 H 1.48507 * 109.47104 * 240.00403 * 3 2 1 5 5 H 1.48502 * 109.46978 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47351 * 120.00375 * 3 2 1 7 7 C 1.38817 * 119.99676 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99231 * 197.58132 * 7 2 1 9 9 N 1.36930 * 119.99895 * 17.57947 * 7 2 1 10 10 C 1.46974 * 120.59130 * 208.20827 * 9 7 2 11 11 C 1.53371 * 108.63227 * 235.24803 * 10 9 7 12 12 N 1.46958 * 108.63536 * 310.57431 * 11 10 9 13 13 C 1.34779 * 120.59285 * 235.20177 * 12 11 10 14 14 O 1.21274 * 120.00179 * 0.02562 * 13 12 11 15 15 C 1.50699 * 119.99913 * 180.02562 * 13 12 11 16 16 C 1.53001 * 109.47170 * 180.02562 * 15 13 12 17 17 C 1.50699 * 109.47170 * 180.02562 * 16 15 13 18 18 C 1.33397 * 125.19816 * 90.00010 * 17 16 15 19 19 C 1.38475 * 114.91618 * 180.02562 * 18 17 16 20 20 Cl 1.73604 * 122.55333 * 179.97438 * 19 18 17 21 21 C 1.33440 * 114.89984 * 359.97438 * 19 18 17 22 22 S 1.75882 * 109.59677 * 359.74422 * 21 19 18 23 23 C 1.46963 * 118.81465 * 55.47999 * 12 11 10 24 24 C 1.46958 * 120.59668 * 28.22862 * 9 7 2 25 25 H 0.97000 * 119.99690 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.60922 * 115.50142 * 10 9 7 27 27 H 1.08998 * 109.74911 * 355.07797 * 10 9 7 28 28 H 1.09001 * 109.60645 * 190.83040 * 11 10 9 29 29 H 1.09003 * 109.75186 * 70.40449 * 11 10 9 30 30 H 1.08998 * 109.47247 * 59.99840 * 15 13 12 31 31 H 1.09004 * 109.47232 * 300.00381 * 15 13 12 32 32 H 1.09001 * 109.46728 * 60.00047 * 16 15 13 33 33 H 1.08995 * 109.47050 * 299.99602 * 16 15 13 34 34 H 1.08002 * 122.54753 * 0.02562 * 18 17 16 35 35 H 1.08002 * 125.20328 * 179.97438 * 21 19 18 36 36 H 1.09005 * 109.60701 * 64.26276 * 23 12 11 37 37 H 1.08996 * 109.61631 * 184.77490 * 23 12 11 38 38 H 1.09002 * 109.61008 * 244.49110 * 24 9 7 39 39 H 1.08999 * 109.61423 * 4.83736 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0524 -1.2241 0.2820 9 7 1.3735 -2.3602 -0.3592 10 6 1.8122 -3.6539 0.1830 11 6 2.1173 -4.5975 -0.9869 12 7 0.9833 -4.5690 -1.9213 13 6 0.3572 -5.7089 -2.2750 14 8 0.7282 -6.7705 -1.8211 15 6 -0.8039 -5.6642 -3.2346 16 6 -1.3294 -7.0825 -3.4657 17 6 -2.4901 -7.0379 -4.4258 18 6 -2.3943 -7.1336 -5.7529 19 6 -3.5997 -7.0659 -6.4312 20 17 -3.7053 -7.1686 -8.1610 21 6 -4.6740 -6.9157 -5.6540 22 16 -4.1787 -6.8594 -3.9673 23 6 0.5482 -3.2760 -2.4678 24 6 0.2395 -2.3317 -1.2935 25 1 -0.4850 0.8401 0.0004 26 1 1.0205 -4.0796 0.7994 27 1 2.7101 -3.5154 0.7852 28 1 2.2572 -5.6114 -0.6122 29 1 3.0216 -4.2688 -1.4991 30 1 -0.4754 -5.2390 -4.1829 31 1 -1.5982 -5.0466 -2.8154 32 1 -1.6580 -7.5072 -2.5172 33 1 -0.5353 -7.7003 -3.8849 34 1 -1.4485 -7.2547 -6.2600 35 1 -5.6923 -6.8437 -6.0066 36 1 1.3428 -2.8525 -3.0821 37 1 -0.3484 -3.4170 -3.0713 38 1 -0.6642 -2.6634 -0.7822 39 1 0.0977 -1.3172 -1.6660 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362612185.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:02 Heat of formation + Delta-G solvation = -1.805938 kcal Electronic energy + Delta-G solvation = -22868.503148 eV Core-core repulsion = 19349.651471 eV Total energy + Delta-G solvation = -3518.851677 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.10918 -39.29379 -38.46138 -37.18433 -35.58951 -34.67686 -33.18870 -31.86394 -30.02501 -28.60985 -26.42440 -25.26333 -24.41728 -23.46961 -21.95960 -20.34611 -20.04791 -18.91967 -18.33360 -17.54864 -17.03660 -16.83628 -16.61099 -16.56929 -15.47700 -15.40273 -15.11876 -14.97115 -14.88420 -14.57503 -14.09537 -14.02781 -13.66126 -13.40590 -13.26096 -13.23605 -13.05516 -12.63024 -12.50051 -12.26107 -12.19947 -12.16545 -12.03228 -11.99758 -11.85472 -11.66530 -11.63118 -10.81674 -10.56994 -9.81109 -9.72751 -9.36898 -8.64979 -7.88456 -5.36159 -0.15259 0.33516 0.73405 1.46408 1.50064 1.51668 1.58589 1.62475 1.64704 2.09138 2.52158 3.26125 3.42371 3.60767 3.88257 3.99874 4.05971 4.15105 4.25161 4.29923 4.39539 4.41818 4.57144 4.59948 4.64257 4.72104 4.79199 4.82910 4.96715 5.05282 5.08497 5.09334 5.23594 5.25259 5.54880 5.61452 5.67287 6.36091 6.51846 7.11601 7.18096 7.79369 8.32583 9.16435 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.017232 B = 0.002564 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.457586 B =10919.891543 C =11644.767246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.044 4.044 3 Si 0.968 3.032 4 H -0.276 1.276 5 H -0.294 1.294 6 H -0.279 1.279 7 C -0.267 4.267 8 H 0.068 0.932 9 N -0.609 5.609 10 C 0.132 3.868 11 C 0.105 3.895 12 N -0.603 5.603 13 C 0.510 3.490 14 O -0.587 6.587 15 C -0.128 4.128 16 C -0.025 4.025 17 C -0.167 4.167 18 C -0.137 4.137 19 C -0.056 4.056 20 Cl -0.055 7.055 21 C -0.213 4.213 22 S 0.155 5.845 23 C 0.095 3.905 24 C 0.162 3.838 25 H 0.252 0.748 26 H 0.008 0.992 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.118 0.882 31 H 0.103 0.897 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.158 0.842 35 H 0.191 0.809 36 H 0.070 0.930 37 H 0.108 0.892 38 H 0.001 0.999 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.036 -13.680 -13.900 21.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.240 4.240 3 Si 0.796 3.204 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.205 1.205 7 C -0.397 4.397 8 H 0.085 0.915 9 N -0.333 5.333 10 C 0.005 3.995 11 C -0.019 4.019 12 N -0.335 5.335 13 C 0.300 3.700 14 O -0.468 6.468 15 C -0.168 4.168 16 C -0.065 4.065 17 C -0.285 4.285 18 C -0.167 4.167 19 C -0.096 4.096 20 Cl -0.026 7.026 21 C -0.349 4.349 22 S 0.418 5.582 23 C -0.029 4.029 24 C 0.035 3.965 25 H 0.061 0.939 26 H 0.026 0.974 27 H 0.089 0.911 28 H 0.104 0.896 29 H 0.087 0.913 30 H 0.136 0.864 31 H 0.122 0.878 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.176 0.824 35 H 0.208 0.792 36 H 0.088 0.912 37 H 0.127 0.873 38 H 0.019 0.981 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.730 -13.934 -12.427 20.610 hybrid contribution 0.950 0.974 -1.085 1.740 sum -7.780 -12.959 -13.512 20.274 Atomic orbital electron populations 1.70149 1.06565 1.26161 1.54830 1.25770 0.96014 1.01385 1.00862 0.85347 0.77580 0.79195 0.78311 1.20176 1.22039 1.20513 1.19466 0.93112 0.85810 1.41297 0.91466 1.44253 1.36962 1.02036 1.50021 1.21352 0.97980 0.86277 0.93850 1.21983 0.88424 1.00326 0.91154 1.48163 1.32914 1.07344 1.45093 1.21139 0.84193 0.82670 0.82024 1.90630 1.67958 1.30413 1.57846 1.21707 0.95869 0.99253 0.99959 1.19778 0.93450 0.95989 0.97263 1.24388 0.98385 1.08456 0.97293 1.19994 0.98954 1.04937 0.92801 1.19868 0.94362 1.09069 0.86266 1.98367 1.98512 1.96892 1.08864 1.25840 1.03572 1.09361 0.96137 1.84594 0.98845 1.70497 1.04250 1.22571 1.00927 0.82661 0.96705 1.21117 0.88019 0.98477 0.88865 0.93866 0.97362 0.91092 0.89564 0.91256 0.86439 0.87836 0.90513 0.88919 0.82404 0.79188 0.91202 0.87350 0.98128 0.90710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.33 11.20 21.65 0.24 -52.09 16 2 C -0.04 -2.36 4.90 84.86 0.42 -1.94 16 3 Si 0.97 42.85 29.59 68.60 2.03 44.88 16 4 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.27 -14.02 9.58 84.04 0.80 -13.21 16 8 H 0.07 3.45 7.89 -2.91 -0.02 3.42 16 9 N -0.61 -29.25 2.97 -697.34 -2.07 -31.32 16 10 C 0.13 5.42 6.67 86.41 0.58 6.00 16 11 C 0.11 3.69 6.59 86.42 0.57 4.26 16 12 N -0.60 -20.00 2.94 -817.16 -2.40 -22.40 16 13 C 0.51 15.61 7.70 87.66 0.67 16.28 16 14 O -0.59 -21.27 15.39 -3.01 -0.05 -21.32 16 15 C -0.13 -2.77 4.02 29.85 0.12 -2.65 16 16 C -0.03 -0.51 5.00 29.85 0.15 -0.36 16 17 C -0.17 -3.01 5.76 24.59 0.14 -2.87 16 18 C -0.14 -2.37 9.94 21.23 0.21 -2.16 16 19 C -0.06 -0.97 6.27 21.24 0.13 -0.83 16 20 Cl -0.05 -0.91 29.11 -2.72 -0.08 -0.99 16 21 C -0.21 -3.27 11.08 66.73 0.74 -2.53 16 22 S 0.15 2.55 23.33 -56.49 -1.32 1.23 16 23 C 0.10 3.10 6.53 86.57 0.57 3.66 16 24 C 0.16 7.13 5.54 86.57 0.48 7.60 16 25 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 26 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 27 H 0.07 2.79 7.94 -2.39 -0.02 2.77 16 28 H 0.09 2.95 6.99 -2.39 -0.02 2.94 16 29 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.12 2.08 7.90 -2.39 -0.02 2.06 16 31 H 0.10 2.16 7.73 -2.38 -0.02 2.14 16 32 H 0.08 1.69 8.10 -2.39 -0.02 1.67 16 33 H 0.09 1.87 8.10 -2.39 -0.02 1.85 16 34 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 35 H 0.19 2.12 8.06 -2.91 -0.02 2.10 16 36 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 37 H 0.11 2.74 5.91 -2.39 -0.01 2.72 16 38 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 39 H 0.07 3.69 5.98 -2.39 -0.01 3.68 16 Total: -1.00 -63.12 348.97 3.00 -60.12 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: 1.06 Total: 10.65 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: 5.58 Total: 11.24 kcal Atomic # 7 Polarization: -101.59 SS G_CDS: -4.23 Total: -105.81 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.05 Total: -21.32 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -1.32 Total: 1.23 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.08 Total: -0.99 kcal Total: -63.12 3.00 -60.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362612185.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.316 kcal (2) G-P(sol) polarization free energy of solvation -63.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds