Wall clock time and date at job start Tue Mar 31 2020 14:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31593 * 122.23344 * 2 1 4 4 C 1.29946 * 117.13738 * 179.97438 * 3 2 1 5 5 N 1.38892 * 125.36003 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99668 * 179.72060 * 5 4 3 7 7 O 1.21293 * 120.00229 * 0.28097 * 6 5 4 8 8 C 1.50703 * 120.00290 * 180.27660 * 6 5 4 9 9 C 1.52998 * 109.46902 * 84.99888 * 8 6 5 10 10 O 1.42906 * 109.46948 * 325.00324 * 8 6 5 11 11 C 1.52995 * 109.47472 * 205.00231 * 8 6 5 12 12 C 1.52996 * 117.50191 * 253.74692 * 11 8 6 13 13 C 1.52999 * 117.50053 * 185.08449 * 11 8 6 14 14 S 1.76140 * 109.27263 * 0.22462 * 4 3 2 15 15 C 1.34660 * 122.22797 * 179.97438 * 2 1 3 16 16 S 1.76199 * 125.93193 * 0.02562 * 15 2 1 17 17 C 1.76192 * 99.99981 * 179.97438 * 16 15 2 18 18 H 1.08001 * 120.00141 * 0.02562 * 17 16 15 19 19 C 1.38437 * 120.00107 * 180.02562 * 17 16 15 20 20 N 1.31813 * 119.99414 * 359.97438 * 19 17 16 21 21 Si 1.86789 * 120.00160 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47346 * 59.99618 * 21 19 17 23 23 H 1.48498 * 109.47399 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47307 * 299.99902 * 21 19 17 25 25 H 1.09005 * 109.47133 * 90.02633 * 1 2 3 26 26 H 1.09000 * 109.47697 * 210.02776 * 1 2 3 27 27 H 1.09005 * 109.46895 * 330.03461 * 1 2 3 28 28 H 0.97001 * 120.00544 * 0.02562 * 5 4 3 29 29 H 1.08999 * 109.47045 * 60.00721 * 9 8 6 30 30 H 1.09007 * 109.47256 * 180.02562 * 9 8 6 31 31 H 1.08995 * 109.47315 * 300.00557 * 9 8 6 32 32 H 0.96702 * 113.99589 * 300.00214 * 10 8 6 33 33 H 1.09003 * 115.54864 * 39.41864 * 11 8 6 34 34 H 1.09008 * 117.49721 * 359.97438 * 12 11 8 35 35 H 1.08995 * 117.50425 * 145.01932 * 12 11 8 36 36 H 1.08999 * 117.50209 * 214.97821 * 13 11 8 37 37 H 1.09000 * 117.49515 * 0.02562 * 13 11 8 38 38 H 0.97004 * 119.99148 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2089 1.1131 0.0000 4 6 3.5032 0.9977 0.0005 5 7 4.4044 2.0545 0.0001 6 6 5.7298 1.8099 0.0064 7 8 6.1355 0.6668 0.0073 8 6 6.7077 2.9565 0.0123 9 6 6.9359 3.4248 1.4508 10 8 6.1809 4.0358 -0.7621 11 6 8.0363 2.4968 -0.5913 12 6 9.2078 2.2730 0.3671 13 6 9.2033 3.4859 -0.5667 14 16 3.9346 -0.7101 -0.0054 15 6 2.2251 -1.1391 0.0005 16 16 1.5696 -2.7747 0.0006 17 6 3.0664 -3.7042 0.0006 18 1 4.0186 -3.1945 0.0009 19 6 3.0220 -5.0878 0.0001 20 7 1.8598 -5.7098 0.0002 21 14 4.6088 -6.0732 -0.0006 22 1 5.3990 -5.7401 1.2118 23 1 4.2908 -7.5238 -0.0004 24 1 5.3983 -5.7393 -1.2132 25 1 -0.3634 -0.0005 -1.0277 26 1 -0.3634 -0.8897 0.5142 27 1 -0.3633 0.8903 0.5133 28 1 4.0800 2.9687 -0.0003 29 1 7.3378 2.6015 2.0415 30 1 7.6429 4.2544 1.4551 31 1 5.9894 3.7522 1.8808 32 1 6.0112 3.8101 -1.6870 33 1 7.9569 1.8335 -1.4526 34 1 9.0320 2.4537 1.4276 35 1 9.8993 1.4627 0.1361 36 1 9.8919 3.4731 -1.4115 37 1 9.0246 4.4641 -0.1201 38 1 1.8288 -6.6793 -0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362679179.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:43 Heat of formation + Delta-G solvation = -20.902824 kcal Electronic energy + Delta-G solvation = -23011.867979 eV Core-core repulsion = 19494.231905 eV Total energy + Delta-G solvation = -3517.636074 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.85253 -38.83565 -38.00790 -36.04658 -34.61071 -32.83512 -31.13228 -30.29192 -27.13070 -25.93986 -25.75846 -23.85603 -22.65214 -21.47926 -20.45585 -19.66356 -18.47741 -17.79754 -17.24040 -16.81609 -15.96512 -15.82485 -15.45753 -15.11552 -14.73855 -14.19630 -14.08620 -13.75262 -13.54400 -13.21124 -12.89275 -12.68834 -12.49909 -12.23123 -12.08490 -11.88985 -11.53111 -11.41311 -11.26120 -11.10853 -10.99918 -10.84062 -10.58400 -10.55056 -10.49286 -10.29091 -9.69522 -9.53343 -9.07612 -8.76025 -8.67379 -7.82391 -6.61301 -6.51680 -4.29105 1.33821 1.86724 2.34293 2.50460 2.75446 3.06468 3.11222 3.14172 3.32538 3.41490 3.60830 3.83916 3.96824 4.23686 4.26717 4.56431 4.70706 4.81331 4.83304 5.02242 5.10074 5.22153 5.28294 5.37199 5.46914 5.57412 5.73702 5.85794 5.89164 5.97276 6.13099 6.22709 6.43736 6.48089 6.91226 6.99961 7.23847 7.31560 7.91899 8.02540 8.50918 8.87053 10.44446 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014086 B = 0.003849 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.303717 B = 7273.450775 C = 9035.926930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.019 3.981 3 N -0.473 5.473 4 C 0.184 3.816 5 N -0.607 5.607 6 C 0.480 3.520 7 O -0.494 6.494 8 C 0.164 3.836 9 C -0.144 4.144 10 O -0.545 6.545 11 C -0.175 4.175 12 C -0.167 4.167 13 C -0.163 4.163 14 S 0.197 5.803 15 C -0.250 4.250 16 S 0.151 5.849 17 C -0.558 4.558 18 H 0.088 0.912 19 C 0.083 3.917 20 N -0.863 5.863 21 Si 0.925 3.075 22 H -0.267 1.267 23 H -0.278 1.278 24 H -0.267 1.267 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.419 0.581 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.385 0.615 33 H 0.113 0.887 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.625 16.895 -0.194 19.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.124 4.124 3 N -0.194 5.194 4 C -0.187 4.187 5 N -0.256 5.256 6 C 0.264 3.736 7 O -0.367 6.367 8 C 0.120 3.880 9 C -0.202 4.202 10 O -0.351 6.351 11 C -0.194 4.194 12 C -0.204 4.204 13 C -0.200 4.200 14 S 0.441 5.559 15 C -0.487 4.487 16 S 0.402 5.598 17 C -0.706 4.706 18 H 0.106 0.894 19 C -0.128 4.128 20 N -0.496 5.496 21 Si 0.749 3.251 22 H -0.192 1.192 23 H -0.203 1.203 24 H -0.192 1.192 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.257 0.743 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.234 0.766 33 H 0.131 0.869 34 H 0.121 0.879 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.447 15.574 0.367 18.219 hybrid contribution 1.035 -0.002 -0.602 1.197 sum 10.482 15.572 -0.235 18.773 Atomic orbital electron populations 1.20120 0.88019 1.02133 1.01807 1.19047 0.96726 0.84581 1.12036 1.65818 1.02840 1.32372 1.18390 1.23807 0.89903 0.92901 1.12065 1.42415 1.04341 1.08404 1.70476 1.21598 0.82466 0.91930 0.77628 1.90723 1.77038 1.22126 1.46848 1.20691 0.89361 0.83841 0.94139 1.21930 1.03812 1.02828 0.91585 1.86574 1.85628 1.36720 1.26197 1.22611 0.89085 1.04312 1.03374 1.23116 0.99932 1.00112 0.97245 1.22959 0.99684 0.94855 1.02542 1.85807 1.01890 0.95538 1.72647 1.28776 1.01224 1.06752 1.11957 1.83067 1.10965 0.84359 1.81431 1.23226 0.93578 0.94062 1.59764 0.89405 1.25023 0.98274 0.96646 0.92892 1.70009 1.24431 1.10410 1.44740 0.86083 0.81173 0.78112 0.79703 1.19207 1.20335 1.19221 0.91861 0.91038 0.91907 0.74289 0.89704 0.90087 0.90966 0.76638 0.86869 0.87894 0.88352 0.88515 0.88250 0.91236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.08 10.02 36.00 0.36 -0.72 16 2 C 0.02 0.39 6.73 -83.96 -0.57 -0.17 16 3 N -0.47 -9.54 10.55 -9.78 -0.10 -9.64 16 4 C 0.18 3.54 8.40 -87.19 -0.73 2.81 16 5 N -0.61 -8.94 5.31 -11.78 -0.06 -9.00 16 6 C 0.48 6.76 6.65 -10.98 -0.07 6.69 16 7 O -0.49 -8.80 13.76 5.55 0.08 -8.72 16 8 C 0.16 1.64 1.14 -91.77 -0.10 1.54 16 9 C -0.14 -1.26 7.48 37.16 0.28 -0.98 16 10 O -0.54 -4.65 12.27 -35.23 -0.43 -5.09 16 11 C -0.17 -1.68 4.73 -90.63 -0.43 -2.11 16 12 C -0.17 -1.44 9.66 -26.70 -0.26 -1.70 16 13 C -0.16 -1.22 9.86 -26.69 -0.26 -1.48 16 14 S 0.20 4.35 18.35 -107.50 -1.97 2.37 16 15 C -0.25 -5.79 6.67 29.47 0.20 -5.59 16 16 S 0.15 3.80 20.74 -107.50 -2.23 1.57 16 17 C -0.56 -15.20 9.26 30.81 0.29 -14.92 16 18 H 0.09 2.38 5.97 -52.49 -0.31 2.06 16 19 C 0.08 2.21 5.49 -17.49 -0.10 2.11 16 20 N -0.86 -23.77 13.22 55.47 0.73 -23.03 16 21 Si 0.92 20.67 29.55 -169.99 -5.02 15.64 16 22 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 23 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.07 1.25 7.38 -51.93 -0.38 0.87 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.42 5.07 8.26 -40.82 -0.34 4.73 16 29 H 0.08 0.75 6.74 -51.93 -0.35 0.40 16 30 H 0.08 0.58 6.96 -51.93 -0.36 0.22 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.39 2.34 9.04 45.56 0.41 2.76 16 33 H 0.11 1.21 8.09 -51.93 -0.42 0.79 16 34 H 0.10 0.81 5.89 -51.92 -0.31 0.50 16 35 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.10 0.68 7.28 -51.93 -0.38 0.31 16 38 H 0.28 7.11 8.32 -40.82 -0.34 6.77 16 LS Contribution 345.79 15.07 5.21 5.21 Total: -1.00 -31.51 345.79 -8.89 -40.40 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -3.69 Total: 4.80 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: -1.40 Total: -14.51 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: 0.57 Total: -41.68 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.36 Total: -13.81 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 8.15 SS G_CDS: -4.20 Total: 3.95 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.51 -8.89 -40.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362679179.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.497 kcal (2) G-P(sol) polarization free energy of solvation -31.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds