Wall clock time and date at job start Tue Mar 31 2020 14:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31593 * 122.23344 * 2 1 4 4 C 1.29946 * 117.13738 * 179.97438 * 3 2 1 5 5 N 1.38892 * 125.36003 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99668 * 179.72060 * 5 4 3 7 7 O 1.21293 * 120.00229 * 0.28097 * 6 5 4 8 8 C 1.50703 * 120.00290 * 180.27660 * 6 5 4 9 9 C 1.52998 * 109.46902 * 84.99888 * 8 6 5 10 10 O 1.42906 * 109.46948 * 325.00324 * 8 6 5 11 11 C 1.52995 * 109.47472 * 205.00231 * 8 6 5 12 12 C 1.52996 * 117.50191 * 253.74692 * 11 8 6 13 13 C 1.52999 * 117.50053 * 185.08449 * 11 8 6 14 14 S 1.76140 * 109.27263 * 0.22462 * 4 3 2 15 15 C 1.34660 * 122.22797 * 179.97438 * 2 1 3 16 16 S 1.76199 * 125.93193 * 0.02562 * 15 2 1 17 17 C 1.76192 * 99.99981 * 179.97438 * 16 15 2 18 18 H 1.08001 * 120.00141 * 0.02562 * 17 16 15 19 19 C 1.38437 * 120.00107 * 180.02562 * 17 16 15 20 20 N 1.31813 * 119.99414 * 359.97438 * 19 17 16 21 21 Si 1.86789 * 120.00160 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47346 * 59.99618 * 21 19 17 23 23 H 1.48498 * 109.47399 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47307 * 299.99902 * 21 19 17 25 25 H 1.09005 * 109.47133 * 90.02633 * 1 2 3 26 26 H 1.09000 * 109.47697 * 210.02776 * 1 2 3 27 27 H 1.09005 * 109.46895 * 330.03461 * 1 2 3 28 28 H 0.97001 * 120.00544 * 0.02562 * 5 4 3 29 29 H 1.08999 * 109.47045 * 60.00721 * 9 8 6 30 30 H 1.09007 * 109.47256 * 180.02562 * 9 8 6 31 31 H 1.08995 * 109.47315 * 300.00557 * 9 8 6 32 32 H 0.96702 * 113.99589 * 300.00214 * 10 8 6 33 33 H 1.09003 * 115.54864 * 39.41864 * 11 8 6 34 34 H 1.09008 * 117.49721 * 359.97438 * 12 11 8 35 35 H 1.08995 * 117.50425 * 145.01932 * 12 11 8 36 36 H 1.08999 * 117.50209 * 214.97821 * 13 11 8 37 37 H 1.09000 * 117.49515 * 0.02562 * 13 11 8 38 38 H 0.97004 * 119.99148 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2089 1.1131 0.0000 4 6 3.5032 0.9977 0.0005 5 7 4.4044 2.0545 0.0001 6 6 5.7298 1.8099 0.0064 7 8 6.1355 0.6668 0.0073 8 6 6.7077 2.9565 0.0123 9 6 6.9359 3.4248 1.4508 10 8 6.1809 4.0358 -0.7621 11 6 8.0363 2.4968 -0.5913 12 6 9.2078 2.2730 0.3671 13 6 9.2033 3.4859 -0.5667 14 16 3.9346 -0.7101 -0.0054 15 6 2.2251 -1.1391 0.0005 16 16 1.5696 -2.7747 0.0006 17 6 3.0664 -3.7042 0.0006 18 1 4.0186 -3.1945 0.0009 19 6 3.0220 -5.0878 0.0001 20 7 1.8598 -5.7098 0.0002 21 14 4.6088 -6.0732 -0.0006 22 1 5.3990 -5.7401 1.2118 23 1 4.2908 -7.5238 -0.0004 24 1 5.3983 -5.7393 -1.2132 25 1 -0.3634 -0.0005 -1.0277 26 1 -0.3634 -0.8897 0.5142 27 1 -0.3633 0.8903 0.5133 28 1 4.0800 2.9687 -0.0003 29 1 7.3378 2.6015 2.0415 30 1 7.6429 4.2544 1.4551 31 1 5.9894 3.7522 1.8808 32 1 6.0112 3.8101 -1.6870 33 1 7.9569 1.8335 -1.4526 34 1 9.0320 2.4537 1.4276 35 1 9.8993 1.4627 0.1361 36 1 9.8919 3.4731 -1.4115 37 1 9.0246 4.4641 -0.1201 38 1 1.8288 -6.6793 -0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362679179.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:42 Heat of formation + Delta-G solvation = -42.911440 kcal Electronic energy + Delta-G solvation = -23012.822344 eV Core-core repulsion = 19494.231905 eV Total energy + Delta-G solvation = -3518.590439 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.97877 -40.35363 -39.07311 -36.86489 -35.90981 -34.82901 -32.26299 -31.45762 -28.81177 -27.73494 -26.86875 -25.13141 -23.27922 -22.77474 -21.83659 -20.72841 -20.00927 -19.21478 -18.70773 -17.74596 -17.33867 -17.08552 -17.03516 -16.84562 -15.94022 -15.68648 -15.22099 -14.94724 -14.70052 -14.45024 -14.39321 -13.62035 -13.50402 -13.43624 -13.32106 -13.20276 -13.07938 -13.05202 -12.87730 -12.27904 -12.16379 -12.11824 -12.05330 -11.73586 -11.45980 -11.35218 -11.20692 -11.02384 -10.70832 -10.50440 -10.48436 -9.55672 -8.58807 -8.38965 -6.31417 -0.28145 0.18429 0.79758 1.05713 1.25123 1.34750 1.37750 1.44013 1.60113 1.97954 2.13392 2.70115 2.80565 3.06356 3.08034 3.28583 3.48869 3.71608 3.83844 4.01614 4.16593 4.39419 4.41735 4.63767 4.66944 4.69478 4.83711 4.86506 4.94029 4.95730 5.02468 5.05671 5.22033 5.26706 5.27789 5.45135 5.82488 6.00408 6.44730 6.70664 6.83845 6.85715 8.48790 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014086 B = 0.003849 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.303717 B = 7273.450775 C = 9035.926930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.036 3.964 3 N -0.481 5.481 4 C 0.222 3.778 5 N -0.596 5.596 6 C 0.481 3.519 7 O -0.527 6.527 8 C 0.181 3.819 9 C -0.147 4.147 10 O -0.540 6.540 11 C -0.195 4.195 12 C -0.176 4.176 13 C -0.139 4.139 14 S 0.159 5.841 15 C -0.281 4.281 16 S 0.102 5.898 17 C -0.578 4.578 18 H 0.080 0.920 19 C 0.037 3.963 20 N -0.895 5.895 21 Si 0.984 3.016 22 H -0.265 1.265 23 H -0.263 1.263 24 H -0.265 1.265 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.086 0.914 28 H 0.436 0.564 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.074 0.926 32 H 0.397 0.603 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.113 0.887 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.140 19.763 -0.135 22.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.105 4.105 3 N -0.203 5.203 4 C -0.150 4.150 5 N -0.249 5.249 6 C 0.267 3.733 7 O -0.401 6.401 8 C 0.136 3.864 9 C -0.204 4.204 10 O -0.347 6.347 11 C -0.214 4.214 12 C -0.213 4.213 13 C -0.175 4.175 14 S 0.403 5.597 15 C -0.516 4.516 16 S 0.350 5.650 17 C -0.726 4.726 18 H 0.098 0.902 19 C -0.171 4.171 20 N -0.530 5.530 21 Si 0.805 3.195 22 H -0.190 1.190 23 H -0.187 1.187 24 H -0.190 1.190 25 H 0.097 0.903 26 H 0.087 0.913 27 H 0.105 0.895 28 H 0.278 0.722 29 H 0.100 0.900 30 H 0.122 0.878 31 H 0.093 0.907 32 H 0.247 0.753 33 H 0.115 0.885 34 H 0.129 0.871 35 H 0.113 0.887 36 H 0.125 0.875 37 H 0.131 0.869 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.975 18.512 0.414 21.525 hybrid contribution 0.664 -0.530 -0.646 1.067 sum 11.639 17.983 -0.231 21.422 Atomic orbital electron populations 1.20250 0.85625 1.03158 1.03131 1.19717 0.98455 0.84147 1.08218 1.66033 1.02737 1.31404 1.20163 1.24168 0.90243 0.93045 1.07582 1.42627 1.04076 1.08073 1.70089 1.22712 0.82338 0.92766 0.75506 1.90720 1.77382 1.24172 1.47848 1.20578 0.87949 0.82376 0.95460 1.22011 1.04660 1.03494 0.90244 1.86576 1.85400 1.35620 1.27132 1.22578 0.89488 1.05867 1.03461 1.23227 0.99276 1.00970 0.97803 1.23036 0.97672 0.94678 1.02156 1.85976 1.02323 0.98007 1.73367 1.28603 1.01631 1.06067 1.15291 1.82885 1.11143 0.86109 1.84856 1.23421 0.93877 0.94877 1.60459 0.90177 1.25876 1.01389 0.97390 0.92424 1.70088 1.26172 1.10804 1.45916 0.85196 0.77312 0.77332 0.79620 1.18951 1.18738 1.18960 0.90273 0.91321 0.89503 0.72230 0.90038 0.87778 0.90688 0.75251 0.88506 0.87085 0.88746 0.87497 0.86890 0.90857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.11 10.02 71.24 0.71 -1.40 16 2 C 0.04 1.50 6.73 41.77 0.28 1.78 16 3 N -0.48 -18.62 10.55 -184.87 -1.95 -20.57 16 4 C 0.22 8.28 8.40 179.15 1.50 9.78 16 5 N -0.60 -16.31 5.31 -309.56 -1.64 -17.95 16 6 C 0.48 12.76 6.65 87.66 0.58 13.34 16 7 O -0.53 -18.51 13.76 -3.07 -0.04 -18.55 16 8 C 0.18 3.16 1.14 -11.54 -0.01 3.14 16 9 C -0.15 -2.11 7.48 71.98 0.54 -1.57 16 10 O -0.54 -7.34 12.27 -148.98 -1.83 -9.17 16 11 C -0.19 -3.35 4.73 -10.80 -0.05 -3.40 16 12 C -0.18 -2.66 9.66 30.62 0.30 -2.37 16 13 C -0.14 -1.63 9.86 30.62 0.30 -1.33 16 14 S 0.16 7.09 18.35 -56.49 -1.04 6.06 16 15 C -0.28 -13.23 6.67 67.00 0.45 -12.78 16 16 S 0.10 5.37 20.74 -56.49 -1.17 4.19 16 17 C -0.58 -32.75 9.26 67.87 0.63 -32.12 16 18 H 0.08 4.52 5.97 -2.91 -0.02 4.50 16 19 C 0.04 2.01 5.49 84.74 0.46 2.47 16 20 N -0.90 -50.76 13.22 21.59 0.29 -50.48 16 21 Si 0.98 43.09 29.55 68.60 2.03 45.12 16 22 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 23 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 24 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 25 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 26 H 0.07 2.39 7.38 -2.39 -0.02 2.37 16 27 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 28 H 0.44 9.19 8.26 -92.71 -0.77 8.43 16 29 H 0.08 1.24 6.74 -2.39 -0.02 1.23 16 30 H 0.10 1.05 6.96 -2.38 -0.02 1.04 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.40 3.55 9.04 -74.06 -0.67 2.88 16 33 H 0.10 1.99 8.09 -2.39 -0.02 1.97 16 34 H 0.11 1.48 5.89 -2.38 -0.01 1.47 16 35 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.11 1.06 7.28 -2.39 -0.02 1.04 16 38 H 0.28 14.76 8.32 -92.71 -0.77 13.99 16 Total: -1.00 -69.78 345.79 0.03 -69.75 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -0.30 Total: 16.05 kcal Atomic # 6 Polarization: -30.14 SS G_CDS: 5.70 Total: -24.44 kcal Atomic # 7 Polarization: -85.70 SS G_CDS: -3.31 Total: -89.01 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -1.87 Total: -27.72 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: 12.46 SS G_CDS: -2.21 Total: 10.25 kcal Total: -69.78 0.03 -69.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362679179.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.839 kcal (2) G-P(sol) polarization free energy of solvation -69.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds