Wall clock time and date at job start Tue Mar 31 2020 15:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.40388 * 120.23925 * 354.54623 * 3 2 1 5 5 N 1.39408 * 120.13206 * 359.97438 * 4 3 2 6 6 C 1.34777 * 119.99709 * 144.99227 * 5 4 3 7 7 O 1.21289 * 120.00388 * 4.50201 * 6 5 4 8 8 C 1.50699 * 120.00331 * 184.50937 * 6 5 4 9 9 C 1.52992 * 109.47568 * 179.97438 * 8 6 5 10 10 C 1.50704 * 109.47241 * 180.02562 * 9 8 6 11 11 H 1.07998 * 119.99710 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00057 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00241 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 119.99971 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47435 * 89.99775 * 14 12 10 16 16 H 1.48495 * 109.46978 * 210.00010 * 14 12 10 17 17 H 1.48498 * 109.47069 * 329.99682 * 14 12 10 18 18 C 1.38656 * 119.72594 * 179.71870 * 4 3 2 19 19 C 1.38240 * 120.21797 * 0.55712 * 18 4 3 20 20 C 1.38254 * 120.49861 * 359.72290 * 19 18 4 21 21 C 1.38566 * 120.25903 * 359.97438 * 20 19 18 22 22 O 1.35701 * 120.11289 * 180.02562 * 21 20 19 23 23 C 1.42905 * 117.00402 * 359.97438 * 22 21 20 24 24 F 1.39901 * 109.47024 * 59.99709 * 23 22 21 25 25 F 1.39893 * 109.47577 * 180.02562 * 23 22 21 26 26 F 1.39901 * 109.47013 * 300.00304 * 23 22 21 27 27 H 0.96997 * 120.00518 * 324.98500 * 5 4 3 28 28 H 1.09001 * 109.46657 * 299.99817 * 8 6 5 29 29 H 1.08995 * 109.47124 * 59.99203 * 8 6 5 30 30 H 1.09001 * 109.47001 * 299.99629 * 9 8 6 31 31 H 1.08995 * 109.47530 * 59.99474 * 9 8 6 32 32 H 0.96999 * 120.00617 * 179.97438 * 13 12 10 33 33 H 1.07996 * 119.88671 * 180.27738 * 18 4 3 34 34 H 1.08005 * 119.75386 * 179.69251 * 19 18 4 35 35 H 1.07993 * 119.87520 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2755 -1.2064 0.1153 5 7 2.5869 -2.4130 0.2310 6 6 3.0850 -3.5301 -0.3350 7 8 4.1711 -3.5043 -0.8744 8 6 2.2927 -4.8115 -0.2978 9 6 3.0777 -5.9174 -1.0057 10 6 2.2850 -7.1986 -0.9690 11 1 1.3181 -7.2217 -0.4883 12 6 2.7941 -8.3412 -1.5490 13 7 2.1026 -9.4593 -1.5165 14 14 4.4662 -8.3009 -2.3809 15 1 5.5206 -8.6331 -1.3894 16 1 4.4940 -9.2941 -3.4845 17 1 4.7132 -6.9436 -2.9302 18 6 4.6620 -1.1940 0.1082 19 6 5.3465 0.0021 -0.0002 20 6 4.6590 1.1967 -0.1083 21 6 3.2734 1.2072 -0.1097 22 8 2.6016 2.3814 -0.2165 23 6 3.3866 3.5707 -0.3237 24 9 4.1947 3.4949 -1.4632 25 9 2.5408 4.6804 -0.4242 26 9 4.1931 3.7010 0.8120 27 1 1.7493 -2.4486 0.7188 28 1 2.1144 -5.0983 0.7386 29 1 1.3384 -4.6633 -0.8030 30 1 3.2557 -5.6303 -2.0420 31 1 4.0323 -6.0657 -0.5008 32 1 2.4605 -10.2631 -1.9248 33 1 5.2089 -2.1214 0.1922 34 1 6.4266 0.0035 0.0001 35 1 5.2040 2.1253 -0.1921 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411116824.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:27 Heat of formation + Delta-G solvation = -172.859359 kcal Electronic energy + Delta-G solvation = -26755.097500 eV Core-core repulsion = 22110.818533 eV Total energy + Delta-G solvation = -4644.278967 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.92855 -48.64062 -48.51578 -41.27242 -40.03894 -38.05930 -36.66293 -34.89331 -33.67652 -31.67155 -31.49630 -29.89443 -26.67762 -26.35824 -24.35414 -23.46665 -21.69869 -20.30094 -20.16030 -19.82728 -19.64730 -18.83422 -17.57309 -17.42734 -16.58382 -16.12463 -15.86106 -15.76812 -15.56320 -15.28305 -15.14417 -15.04389 -14.92917 -14.64433 -14.49827 -14.21257 -13.98822 -13.85148 -13.65455 -13.52630 -13.16670 -12.94309 -12.67270 -12.44200 -12.19953 -12.08003 -11.56222 -11.08341 -10.69370 -10.34372 -10.19011 -9.91007 -9.60674 -9.29837 -9.19168 -8.61117 -8.57626 -6.10454 -4.10660 0.24633 0.68532 0.88692 2.25495 2.34957 2.51616 2.70465 2.86444 3.25929 3.31281 3.31785 3.38872 3.43961 3.47056 3.54076 4.18831 4.37770 4.42941 4.54349 4.77014 4.84508 5.12042 5.24396 5.39862 5.58442 5.68812 5.85275 5.88123 5.92220 6.08767 6.44992 6.46870 7.11232 7.19560 7.22276 7.27527 7.67142 8.07691 8.42696 8.91593 9.51321 11.02200 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.026254 B = 0.002510 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.249612 B =11153.179938 C =11799.311527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C 0.254 3.746 3 C -0.071 4.071 4 C 0.243 3.757 5 N -0.682 5.682 6 C 0.515 3.485 7 O -0.507 6.507 8 C -0.122 4.122 9 C 0.002 3.998 10 C -0.529 4.529 11 H 0.073 0.927 12 C 0.070 3.930 13 N -0.901 5.901 14 Si 0.878 3.122 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.261 1.261 18 C -0.142 4.142 19 C -0.025 4.025 20 C -0.216 4.216 21 C 0.169 3.831 22 O -0.308 6.308 23 C 0.607 3.393 24 F -0.160 7.160 25 F -0.129 7.129 26 F -0.161 7.161 27 H 0.415 0.585 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.026 0.974 31 H 0.022 0.978 32 H 0.264 0.736 33 H 0.162 0.838 34 H 0.146 0.854 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.470 27.662 5.473 28.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.075 5.075 2 C -0.061 4.061 3 C -0.079 4.079 4 C 0.143 3.857 5 N -0.327 5.327 6 C 0.306 3.694 7 O -0.380 6.380 8 C -0.161 4.161 9 C -0.036 4.036 10 C -0.567 4.567 11 H 0.092 0.908 12 C -0.132 4.132 13 N -0.539 5.539 14 Si 0.705 3.295 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.185 1.185 18 C -0.163 4.163 19 C -0.045 4.045 20 C -0.236 4.236 21 C 0.123 3.877 22 O -0.227 6.227 23 C 0.516 3.484 24 F -0.142 7.142 25 F -0.110 7.110 26 F -0.143 7.143 27 H 0.252 0.748 28 H 0.113 0.887 29 H 0.112 0.888 30 H 0.044 0.956 31 H 0.040 0.960 32 H 0.074 0.926 33 H 0.179 0.821 34 H 0.164 0.836 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.279 27.432 4.986 28.376 hybrid contribution 0.931 0.303 -0.259 1.012 sum 6.210 27.735 4.727 28.812 Atomic orbital electron populations 1.81273 1.11425 1.06079 1.08706 1.25086 0.92038 0.94728 0.94242 1.14870 0.84802 0.90700 1.17488 1.17437 0.91355 0.83711 0.93210 1.43982 1.26834 1.06684 1.55179 1.21995 0.86979 0.84836 0.75565 1.90670 1.20869 1.84476 1.41946 1.21775 0.99973 0.90215 1.04168 1.19401 0.95598 0.92566 0.96048 1.21055 1.05576 0.92433 1.37617 0.90843 1.24974 0.97457 0.95278 0.95465 1.69901 1.38293 1.00640 1.45073 0.86791 0.84564 0.78504 0.79653 1.20172 1.21390 1.18528 1.21471 0.91760 1.00454 1.02587 1.21091 1.00940 0.90277 0.92183 1.21408 0.90993 1.01313 1.09842 1.18157 0.90521 0.81529 0.97508 1.86389 1.35479 1.12891 1.87925 1.19287 0.74944 0.79201 0.74941 1.93327 1.73438 1.95906 1.51566 1.93328 1.71770 1.50000 1.95914 1.93319 1.73566 1.95686 1.51755 0.74775 0.88735 0.88816 0.95614 0.96001 0.92591 0.82095 0.83606 0.83981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -5.61 18.54 41.83 0.78 -4.84 16 2 C 0.25 3.14 13.96 -22.47 -0.31 2.82 16 3 C -0.07 -0.77 5.77 -106.42 -0.61 -1.38 16 4 C 0.24 2.72 6.31 -83.45 -0.53 2.19 16 5 N -0.68 -8.08 5.01 -9.67 -0.05 -8.12 16 6 C 0.52 7.94 7.67 -10.99 -0.08 7.86 16 7 O -0.51 -9.17 13.39 5.55 0.07 -9.10 16 8 C -0.12 -2.09 5.64 -27.89 -0.16 -2.24 16 9 C 0.00 0.04 3.33 -27.89 -0.09 -0.05 16 10 C -0.53 -14.42 9.66 -34.44 -0.33 -14.76 16 11 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 12 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 13 N -0.90 -27.19 13.96 55.43 0.77 -26.42 16 14 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.26 -6.30 6.54 56.52 0.37 -5.94 16 18 C -0.14 -1.47 8.68 -39.43 -0.34 -1.81 16 19 C -0.03 -0.20 10.02 -39.57 -0.40 -0.59 16 20 C -0.22 -1.70 8.25 -39.45 -0.33 -2.02 16 21 C 0.17 1.62 6.49 -38.72 -0.25 1.37 16 22 O -0.31 -2.95 9.81 -18.81 -0.18 -3.13 16 23 C 0.61 4.66 3.42 101.05 0.35 5.01 16 24 F -0.16 -1.19 15.56 2.25 0.04 -1.16 16 25 F -0.13 -1.00 17.53 2.25 0.04 -0.96 16 26 F -0.16 -1.13 15.56 2.25 0.04 -1.09 16 27 H 0.42 4.05 8.18 -40.82 -0.33 3.72 16 28 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 29 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 30 H 0.03 0.62 7.15 -51.93 -0.37 0.24 16 31 H 0.02 0.51 7.53 -51.93 -0.39 0.12 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.16 1.87 6.18 -52.49 -0.32 1.55 16 34 H 0.15 0.72 8.06 -52.48 -0.42 0.29 16 35 H 0.14 0.88 5.08 -52.49 -0.27 0.61 16 LS Contribution 327.01 15.07 4.93 4.93 Total: -1.00 -32.02 327.01 -3.97 -35.99 By element: Atomic # 1 Polarization: 1.25 SS G_CDS: -2.54 Total: -1.29 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -3.19 Total: -1.70 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: 1.50 Total: -39.38 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -0.11 Total: -12.23 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.11 Total: -3.22 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.02 -3.97 -35.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411116824.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.864 kcal (2) G-P(sol) polarization free energy of solvation -32.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds