Wall clock time and date at job start Tue Mar 31 2020 15:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.40388 * 120.23925 * 354.54623 * 3 2 1 5 5 N 1.39408 * 120.13206 * 359.97438 * 4 3 2 6 6 C 1.34777 * 119.99709 * 144.99227 * 5 4 3 7 7 O 1.21289 * 120.00388 * 4.50201 * 6 5 4 8 8 C 1.50699 * 120.00331 * 184.50937 * 6 5 4 9 9 C 1.52992 * 109.47568 * 179.97438 * 8 6 5 10 10 C 1.50704 * 109.47241 * 180.02562 * 9 8 6 11 11 H 1.07998 * 119.99710 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00057 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00241 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 119.99971 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47435 * 89.99775 * 14 12 10 16 16 H 1.48495 * 109.46978 * 210.00010 * 14 12 10 17 17 H 1.48498 * 109.47069 * 329.99682 * 14 12 10 18 18 C 1.38656 * 119.72594 * 179.71870 * 4 3 2 19 19 C 1.38240 * 120.21797 * 0.55712 * 18 4 3 20 20 C 1.38254 * 120.49861 * 359.72290 * 19 18 4 21 21 C 1.38566 * 120.25903 * 359.97438 * 20 19 18 22 22 O 1.35701 * 120.11289 * 180.02562 * 21 20 19 23 23 C 1.42905 * 117.00402 * 359.97438 * 22 21 20 24 24 F 1.39901 * 109.47024 * 59.99709 * 23 22 21 25 25 F 1.39893 * 109.47577 * 180.02562 * 23 22 21 26 26 F 1.39901 * 109.47013 * 300.00304 * 23 22 21 27 27 H 0.96997 * 120.00518 * 324.98500 * 5 4 3 28 28 H 1.09001 * 109.46657 * 299.99817 * 8 6 5 29 29 H 1.08995 * 109.47124 * 59.99203 * 8 6 5 30 30 H 1.09001 * 109.47001 * 299.99629 * 9 8 6 31 31 H 1.08995 * 109.47530 * 59.99474 * 9 8 6 32 32 H 0.96999 * 120.00617 * 179.97438 * 13 12 10 33 33 H 1.07996 * 119.88671 * 180.27738 * 18 4 3 34 34 H 1.08005 * 119.75386 * 179.69251 * 19 18 4 35 35 H 1.07993 * 119.87520 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2755 -1.2064 0.1153 5 7 2.5869 -2.4130 0.2310 6 6 3.0850 -3.5301 -0.3350 7 8 4.1711 -3.5043 -0.8744 8 6 2.2927 -4.8115 -0.2978 9 6 3.0777 -5.9174 -1.0057 10 6 2.2850 -7.1986 -0.9690 11 1 1.3181 -7.2217 -0.4883 12 6 2.7941 -8.3412 -1.5490 13 7 2.1026 -9.4593 -1.5165 14 14 4.4662 -8.3009 -2.3809 15 1 5.5206 -8.6331 -1.3894 16 1 4.4940 -9.2941 -3.4845 17 1 4.7132 -6.9436 -2.9302 18 6 4.6620 -1.1940 0.1082 19 6 5.3465 0.0021 -0.0002 20 6 4.6590 1.1967 -0.1083 21 6 3.2734 1.2072 -0.1097 22 8 2.6016 2.3814 -0.2165 23 6 3.3866 3.5707 -0.3237 24 9 4.1947 3.4949 -1.4632 25 9 2.5408 4.6804 -0.4242 26 9 4.1931 3.7010 0.8120 27 1 1.7493 -2.4486 0.7188 28 1 2.1144 -5.0983 0.7386 29 1 1.3384 -4.6633 -0.8030 30 1 3.2557 -5.6303 -2.0420 31 1 4.0323 -6.0657 -0.5008 32 1 2.4605 -10.2631 -1.9248 33 1 5.2089 -2.1214 0.1922 34 1 6.4266 0.0035 0.0001 35 1 5.2040 2.1253 -0.1921 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411116824.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:27 Heat of formation + Delta-G solvation = -193.301120 kcal Electronic energy + Delta-G solvation = -26755.983921 eV Core-core repulsion = 22110.818533 eV Total energy + Delta-G solvation = -4645.165388 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.52398 -49.24164 -49.09725 -42.14554 -41.00311 -38.97473 -37.62763 -35.91004 -35.55520 -33.40559 -32.39553 -30.85634 -28.11528 -27.24454 -25.18562 -24.51281 -23.00751 -21.59119 -20.99179 -20.60435 -20.24808 -19.69852 -19.14779 -18.21925 -17.98007 -17.21093 -16.66974 -16.50007 -16.39544 -16.24443 -16.17993 -15.81350 -15.71332 -15.52200 -15.25104 -15.23409 -15.13176 -14.81769 -14.68208 -14.57910 -14.42635 -14.39875 -13.96856 -13.43423 -13.35923 -13.02565 -12.86949 -12.79605 -12.14499 -11.96444 -11.75349 -11.59777 -11.39360 -10.91809 -10.76042 -9.99094 -9.44306 -8.29307 -6.33317 -0.54195 -0.07584 0.22660 1.37274 1.39068 1.39806 1.42532 1.53198 1.59932 1.76129 1.90240 2.37343 2.50434 2.59525 2.63915 2.90453 3.06878 3.52353 3.65711 3.68442 3.82509 4.12620 4.16979 4.35477 4.44524 4.70104 4.85402 4.93353 5.00870 5.19409 5.25857 5.36585 5.44755 5.62055 5.65781 6.09766 6.24522 6.27406 6.73494 6.94134 7.32224 8.86445 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.026254 B = 0.002510 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.249612 B =11153.179938 C =11799.311527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C 0.270 3.730 3 C -0.079 4.079 4 C 0.229 3.771 5 N -0.669 5.669 6 C 0.527 3.473 7 O -0.536 6.536 8 C -0.118 4.118 9 C 0.005 3.995 10 C -0.531 4.531 11 H 0.046 0.954 12 C 0.010 3.990 13 N -0.947 5.947 14 Si 0.942 3.058 15 H -0.266 1.266 16 H -0.284 1.284 17 H -0.254 1.254 18 C -0.151 4.151 19 C -0.007 4.007 20 C -0.204 4.204 21 C 0.168 3.832 22 O -0.321 6.321 23 C 0.612 3.388 24 F -0.156 7.156 25 F -0.130 7.130 26 F -0.154 7.154 27 H 0.425 0.575 28 H 0.112 0.888 29 H 0.102 0.898 30 H 0.015 0.985 31 H 0.020 0.980 32 H 0.267 0.733 33 H 0.150 0.850 34 H 0.181 0.819 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.613 29.944 5.580 31.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.113 5.113 2 C -0.044 4.044 3 C -0.086 4.086 4 C 0.130 3.870 5 N -0.314 5.314 6 C 0.317 3.683 7 O -0.411 6.411 8 C -0.158 4.158 9 C -0.033 4.033 10 C -0.569 4.569 11 H 0.065 0.935 12 C -0.188 4.188 13 N -0.587 5.587 14 Si 0.766 3.234 15 H -0.191 1.191 16 H -0.210 1.210 17 H -0.178 1.178 18 C -0.171 4.171 19 C -0.026 4.026 20 C -0.224 4.224 21 C 0.121 3.879 22 O -0.240 6.240 23 C 0.522 3.478 24 F -0.138 7.138 25 F -0.111 7.111 26 F -0.136 7.136 27 H 0.263 0.737 28 H 0.130 0.870 29 H 0.120 0.880 30 H 0.033 0.967 31 H 0.039 0.961 32 H 0.075 0.925 33 H 0.168 0.832 34 H 0.199 0.801 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 7.404 29.764 5.118 31.095 hybrid contribution 0.251 -0.289 -0.241 0.452 sum 7.655 29.475 4.878 30.841 Atomic orbital electron populations 1.81283 1.12491 1.07266 1.10265 1.25328 0.92304 0.93652 0.93158 1.14831 0.83869 0.91217 1.18676 1.17487 0.91784 0.83127 0.94643 1.43598 1.27058 1.06266 1.54522 1.21375 0.86247 0.85076 0.75593 1.90662 1.21887 1.85014 1.43539 1.21563 0.99652 0.89908 1.04643 1.19246 0.95555 0.92373 0.96123 1.21432 1.04906 0.94345 1.36247 0.93526 1.25873 1.01367 0.95028 0.96488 1.70036 1.40381 1.01514 1.46802 0.85770 0.80091 0.78724 0.78799 1.19056 1.21033 1.17790 1.21495 0.91333 1.01136 1.03178 1.21441 1.02554 0.88942 0.89615 1.21686 0.90176 1.02309 1.08183 1.18269 0.91174 0.81204 0.97209 1.86371 1.36385 1.13361 1.87915 1.19165 0.74863 0.78621 0.75145 1.93338 1.73222 1.95851 1.51430 1.93331 1.71906 1.49929 1.95933 1.93335 1.73259 1.95599 1.51424 0.73683 0.87008 0.88018 0.96673 0.96144 0.92454 0.83240 0.80143 0.81863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -12.19 18.54 19.00 0.35 -11.84 16 2 C 0.27 6.47 13.96 88.33 1.23 7.70 16 3 C -0.08 -1.58 5.77 -21.03 -0.12 -1.70 16 4 C 0.23 4.75 6.31 38.56 0.24 4.99 16 5 N -0.67 -15.06 5.01 -302.90 -1.52 -16.58 16 6 C 0.53 15.66 7.67 87.66 0.67 16.33 16 7 O -0.54 -18.79 13.39 -3.06 -0.04 -18.83 16 8 C -0.12 -3.97 5.64 29.85 0.17 -3.80 16 9 C 0.01 0.23 3.33 29.85 0.10 0.33 16 10 C -0.53 -29.37 9.66 25.60 0.25 -29.12 16 11 H 0.05 2.75 7.99 -2.91 -0.02 2.73 16 12 C 0.01 0.57 5.47 84.66 0.46 1.03 16 13 N -0.95 -58.32 13.96 21.45 0.30 -58.02 16 14 Si 0.94 44.55 27.47 68.60 1.88 46.43 16 15 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 16 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 17 H -0.25 -11.63 6.54 99.48 0.65 -10.98 16 18 C -0.15 -2.78 8.68 22.37 0.19 -2.58 16 19 C -0.01 -0.08 10.02 22.27 0.22 0.15 16 20 C -0.20 -2.49 8.25 22.35 0.18 -2.31 16 21 C 0.17 2.83 6.49 22.82 0.15 2.98 16 22 O -0.32 -5.53 9.81 -90.21 -0.88 -6.41 16 23 C 0.61 7.97 3.42 113.37 0.39 8.36 16 24 F -0.16 -1.90 15.56 44.97 0.70 -1.20 16 25 F -0.13 -1.79 17.53 44.97 0.79 -1.00 16 26 F -0.15 -1.72 15.56 44.97 0.70 -1.02 16 27 H 0.42 7.84 8.18 -92.71 -0.76 7.08 16 28 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 29 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 30 H 0.01 0.71 7.15 -2.39 -0.02 0.69 16 31 H 0.02 0.93 7.53 -2.39 -0.02 0.91 16 32 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 33 H 0.15 3.22 6.18 -2.91 -0.02 3.20 16 34 H 0.18 0.88 8.06 -2.91 -0.02 0.86 16 35 H 0.16 1.33 5.08 -2.91 -0.01 1.32 16 Total: -1.00 -69.77 327.01 6.81 -62.96 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: 0.38 Total: 3.15 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: 4.14 Total: 2.36 kcal Atomic # 7 Polarization: -85.58 SS G_CDS: -0.87 Total: -86.44 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.93 Total: -25.24 kcal Atomic # 9 Polarization: -5.41 SS G_CDS: 2.19 Total: -3.22 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.88 Total: 46.43 kcal Total: -69.77 6.81 -62.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411116824.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.340 kcal (2) G-P(sol) polarization free energy of solvation -69.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds